FFCP PHASE1:Hg19::chr12:66036137..66036157,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA|HGNC=|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_ENST00000539653,ENST00000544557_5end|coexpression_cluster_id=C341|description=CAGE_peak_1_at_ENST00000539653_5end,CAGE_peak_2_at_ENST00000544557_5end|id=chr12:66036137..66036157,-|ontology_enrichment_celltype=CL:0000188!4.05e-18!9;CL:0000055!6.26e-18!180;CL:0000680!7.04e-16!57;CL:0000056!7.04e-16!57;CL:0000355!7.04e-16!57;CL:0000515!2.88e-13!4;CL:0000183!6.70e-12!59;CL:0000187!1.05e-11!54;CL:0000594!7.92e-11!3;CL:0000393!3.71e-10!60;CL:0000211!3.71e-10!60;CL:0000322!5.53e-10!3;CL:0002551!1.12e-09!6;CL:1000306!3.09e-08!4;CL:0002547!3.09e-08!4;CL:0000222!8.97e-08!119;CL:0000569!2.11e-07!4;CL:0000011!2.11e-07!4;CL:0000220!9.05e-07!246|ontology_enrichment_celltype_v019=CL:0000188;6.81e-24;9!CL:0002551;1.66e-23;6!CL:0002573;2.67e-12;2!CL:0000228;6.06e-10;1!CL:0002372;6.06e-10;1!CL:0002566;9.40e-10;1!CL:1000306;1.89e-09;4!CL:0002547;1.89e-09;4|ontology_enrichment_celltype_v019_2=CL:0000188,5.76e-24,9;CL:0002551,1.97e-23,6;CL:0002573,2.25e-12,2;CL:0000228,5.30e-10,1;CL:0002372,5.30e-10,1;CL:0002566,8.99e-10,1;CL:1000306,2.15e-09,4;CL:0002547,2.15e-09,4;CL:0000187,5.67e-07,55|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:3910!4.38e-07!2|ontology_enrichment_disease_v019=DOID:0060085;2.84e-10;1!DOID:3165;2.84e-10;1!DOID:0060121;2.84e-10;1!DOID:2438;2.84e-10;1!DOID:4418;2.84e-10;1|ontology_enrichment_disease_v019_2=DOID:0060085,2.59e-10,1;DOID:3165,2.59e-10,1;DOID:0060121,2.59e-10,1;DOID:2438,2.59e-10,1;DOID:4418,2.59e-10,1|ontology_enrichment_uberon=UBERON:0004290!4.78e-19!70;UBERON:0000486!2.17e-15!82;UBERON:0000914!3.91e-15!83;UBERON:0002329!3.91e-15!83;UBERON:0003077!3.91e-15!83;UBERON:0003059!3.91e-15!83;UBERON:0007282!3.91e-15!83;UBERON:0009618!3.91e-15!83;UBERON:0007285!3.91e-15!83;UBERON:0001134!1.59e-14!61;UBERON:0002036!1.59e-14!61;UBERON:0003082!1.59e-14!61;UBERON:0002385!6.50e-14!63;UBERON:0001015!6.50e-14!63;UBERON:0000383!6.50e-14!63;UBERON:0004821!5.53e-10!3;UBERON:0003215!5.53e-10!3;UBERON:0002299!5.53e-10!3;UBERON:0006524!5.53e-10!3;UBERON:0008874!5.53e-10!3;UBERON:0002169!5.53e-10!3;UBERON:0004894!5.53e-10!3;UBERON:0000060!3.26e-09!12;UBERON:0000415!3.09e-08!4;UBERON:0007240!3.09e-08!4;UBERON:0005742!3.09e-08!4;UBERON:0005734!3.09e-08!4;UBERON:0004664!3.09e-08!4;UBERON:0004663!3.09e-08!4;UBERON:0005256!2.92e-07!143;UBERON:0004903!4.38e-07!2;UBERON:0002173!4.38e-07!2;UBERON:0002186!4.38e-07!2;UBERON:0002100!8.19e-07!216|ontology_enrichment_uberon_v019=UBERON:0002067;9.18e-16;9!UBERON:0001134;2.07e-13;16!UBERON:0002036;2.07e-13;16!UBERON:0004797;1.89e-09;4!UBERON:0000415;1.89e-09;4!UBERON:0007240;1.89e-09;4!UBERON:0005742;1.89e-09;4!UBERON:0005734;1.89e-09;4!UBERON:0004664;1.89e-09;4!UBERON:0004663;1.89e-09;4!UBERON:0002385;2.51e-09;31!UBERON:0001015;2.51e-09;31!UBERON:0000383;2.51e-09;31|ontology_enrichment_uberon_v019_2=UBERON:0002067,1.03e-15,9;UBERON:0004016,1.03e-15,9;UBERON:0010083,1.03e-15,9;UBERON:0002329,5.55e-13,71;UBERON:0003059,5.55e-13,71;UBERON:0007282,5.55e-13,71;UBERON:0004290,5.55e-13,71;UBERON:0009618,5.55e-13,71;UBERON:0003077,8.89e-13,72;UBERON:0007285,8.89e-13,72;UBERON:0007524,1.41e-12,73;UBERON:0007503,1.17e-11,78;UBERON:0000486,7.51e-11,83;UBERON:0000415,2.15e-09,4;UBERON:0007240,2.15e-09,4;UBERON:0005742,2.15e-09,4;UBERON:0005734,2.15e-09,4;UBERON:0004664,2.15e-09,4;UBERON:0004663,2.15e-09,4;UBERON:0005256,8.07e-07,122|phase1_expression=0,0,0,0,0,0,0,0.631719873426831,0,0.491467873003018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.760272105718513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32409180813219,2.0078563452417,0.709336764396714,0,0,0,0,0.134710672069688,0,0,0,0,0,0,1.19558944441441,16.6756988074146,3.39933183173076,4.21352420106745,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355009592516614,0.10075209822764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.46045156871989,4.20187268114105,0,0,0.719792448923265,0,0,0,0,0,0,0,8.45302752556,0,0,0.257207374262142,0,0.799266537048298,0,0,0,6.84045987016844,0,0,0,0,0,0,0,0,0,0,2.85273810081437,0.579125226670317,0.410952645100767,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0.410635780069046,0,0.813472649219715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.541892875087706,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.69979883324184,4.29810289233163,1.7918754422989,0.644521469209642,0.870100163485371,2.13066568540252,0,0,0,0,0,0,0,1.3940745403212,0.308033580176089,0,0,0,0.143124886741991,0,0,0,0,0,0,5.49464048139461,0,0,0.117812402345686,0,0,0,0,0.2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| ||
|DPIdataset=robustDPI | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000539653,ENST00000544557_5end | |||
|coexpression_cluster_id=C341 | |||
|description=CAGE_peak_1_at_ENST00000539653_5end,CAGE_peak_2_at_ENST00000544557_5end | |||
|id=chr12:66036137..66036157,- | |||
|ontology_enrichment_celltype=CL:0000188!4.05e-18!9;CL:0000055!6.26e-18!180;CL:0000680!7.04e-16!57;CL:0000056!7.04e-16!57;CL:0000355!7.04e-16!57;CL:0000515!2.88e-13!4;CL:0000183!6.70e-12!59;CL:0000187!1.05e-11!54;CL:0000594!7.92e-11!3;CL:0000393!3.71e-10!60;CL:0000211!3.71e-10!60;CL:0000322!5.53e-10!3;CL:0002551!1.12e-09!6;CL:1000306!3.09e-08!4;CL:0002547!3.09e-08!4;CL:0000222!8.97e-08!119;CL:0000569!2.11e-07!4;CL:0000011!2.11e-07!4;CL:0000220!9.05e-07!246 | |||
|ontology_enrichment_celltype_v019=CL:0000188;6.81e-24;9!CL:0002551;1.66e-23;6!CL:0002573;2.67e-12;2!CL:0000228;6.06e-10;1!CL:0002372;6.06e-10;1!CL:0002566;9.40e-10;1!CL:1000306;1.89e-09;4!CL:0002547;1.89e-09;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000188,5.76e-24,9;CL:0002551,1.97e-23,6;CL:0002573,2.25e-12,2;CL:0000228,5.30e-10,1;CL:0002372,5.30e-10,1;CL:0002566,8.99e-10,1;CL:1000306,2.15e-09,4;CL:0002547,2.15e-09,4;CL:0000187,5.67e-07,55 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:3910!4.38e-07!2 | |||
|ontology_enrichment_disease_v019=DOID:0060085;2.84e-10;1!DOID:3165;2.84e-10;1!DOID:0060121;2.84e-10;1!DOID:2438;2.84e-10;1!DOID:4418;2.84e-10;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060085,2.59e-10,1;DOID:3165,2.59e-10,1;DOID:0060121,2.59e-10,1;DOID:2438,2.59e-10,1;DOID:4418,2.59e-10,1 | |||
|ontology_enrichment_uberon=UBERON:0004290!4.78e-19!70;UBERON:0000486!2.17e-15!82;UBERON:0000914!3.91e-15!83;UBERON:0002329!3.91e-15!83;UBERON:0003077!3.91e-15!83;UBERON:0003059!3.91e-15!83;UBERON:0007282!3.91e-15!83;UBERON:0009618!3.91e-15!83;UBERON:0007285!3.91e-15!83;UBERON:0001134!1.59e-14!61;UBERON:0002036!1.59e-14!61;UBERON:0003082!1.59e-14!61;UBERON:0002385!6.50e-14!63;UBERON:0001015!6.50e-14!63;UBERON:0000383!6.50e-14!63;UBERON:0004821!5.53e-10!3;UBERON:0003215!5.53e-10!3;UBERON:0002299!5.53e-10!3;UBERON:0006524!5.53e-10!3;UBERON:0008874!5.53e-10!3;UBERON:0002169!5.53e-10!3;UBERON:0004894!5.53e-10!3;UBERON:0000060!3.26e-09!12;UBERON:0000415!3.09e-08!4;UBERON:0007240!3.09e-08!4;UBERON:0005742!3.09e-08!4;UBERON:0005734!3.09e-08!4;UBERON:0004664!3.09e-08!4;UBERON:0004663!3.09e-08!4;UBERON:0005256!2.92e-07!143;UBERON:0004903!4.38e-07!2;UBERON:0002173!4.38e-07!2;UBERON:0002186!4.38e-07!2;UBERON:0002100!8.19e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0002067;9.18e-16;9!UBERON:0001134;2.07e-13;16!UBERON:0002036;2.07e-13;16!UBERON:0004797;1.89e-09;4!UBERON:0000415;1.89e-09;4!UBERON:0007240;1.89e-09;4!UBERON:0005742;1.89e-09;4!UBERON:0005734;1.89e-09;4!UBERON:0004664;1.89e-09;4!UBERON:0004663;1.89e-09;4!UBERON:0002385;2.51e-09;31!UBERON:0001015;2.51e-09;31!UBERON:0000383;2.51e-09;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002067,1.03e-15,9;UBERON:0004016,1.03e-15,9;UBERON:0010083,1.03e-15,9;UBERON:0002329,5.55e-13,71;UBERON:0003059,5.55e-13,71;UBERON:0007282,5.55e-13,71;UBERON:0004290,5.55e-13,71;UBERON:0009618,5.55e-13,71;UBERON:0003077,8.89e-13,72;UBERON:0007285,8.89e-13,72;UBERON:0007524,1.41e-12,73;UBERON:0007503,1.17e-11,78;UBERON:0000486,7.51e-11,83;UBERON:0000415,2.15e-09,4;UBERON:0007240,2.15e-09,4;UBERON:0005742,2.15e-09,4;UBERON:0005734,2.15e-09,4;UBERON:0004664,2.15e-09,4;UBERON:0004663,2.15e-09,4;UBERON:0005256,8.07e-07,122 | |||
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|short_description=p1@ENST00000539653,p2@ENST00000544557 | |||
}} |
Revision as of 23:58, 10 September 2013
Short description: | p1@ENST00000539653, p2@ENST00000544557 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_ENST00000539653_5end, CAGE_peak_2_at_ENST00000544557_5end |
Coexpression cluster: | C341_giant_large_Fibroblast_Mesenchymal_Alveolar_Mesothelial_mesothelioma |
Association with transcript: | 0bp_to_ENST00000539653, ENST00000544557_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cell of skeletal muscle | 5.76e-24 | 9 |
fibroblast of dermis | 1.97e-23 | 6 |
Schwann cell | 2.25e-12 | 2 |
multinucleate cell | 5.30e-10 | 1 |
myotube | 5.30e-10 | 1 |
dark melanocyte | 8.99e-10 | 1 |
fibroblast of tunica adventitia of artery | 2.15e-09 | 4 |
fibroblast of the aortic adventitia | 2.15e-09 | 4 |
muscle cell | 5.67e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
dermis | 1.03e-15 | 9 |
dermatome | 1.03e-15 | 9 |
future dermis | 1.03e-15 | 9 |
somite | 5.55e-13 | 71 |
presomitic mesoderm | 5.55e-13 | 71 |
presumptive segmental plate | 5.55e-13 | 71 |
dermomyotome | 5.55e-13 | 71 |
trunk paraxial mesoderm | 5.55e-13 | 71 |
paraxial mesoderm | 8.89e-13 | 72 |
presumptive paraxial mesoderm | 8.89e-13 | 72 |
dense mesenchyme tissue | 1.41e-12 | 73 |
epithelial vesicle | 1.17e-11 | 78 |
multilaminar epithelium | 7.51e-11 | 83 |
artery wall | 2.15e-09 | 4 |
tunica adventitia of artery | 2.15e-09 | 4 |
adventitia | 2.15e-09 | 4 |
tunica adventitia of blood vessel | 2.15e-09 | 4 |
aorta tunica adventitia | 2.15e-09 | 4 |
aorta wall | 2.15e-09 | 4 |
trunk mesenchyme | 8.07e-07 | 122 |
Ontology term | p-value | n |
---|---|---|
organ system benign neoplasm | 2.59e-10 | 1 |
skin benign neoplasm | 2.59e-10 | 1 |
integumentary system benign neoplasm | 2.59e-10 | 1 |
dermis tumor | 2.59e-10 | 1 |
cutaneous fibrous histiocytoma | 2.59e-10 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.