FFCP PHASE1:Hg19::chr14:61747978..61747991,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=161291|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=27254|TSSclassifier=S|UniProt=Q3MIR4|association_with_transcript=-19bp_to_ENST00000355702_5end|coexpression_cluster_id=C1727|description=CAGE_peak_7_at_TMEM30B_5end|id=chr14:61747978..61747991,-|ontology_enrichment_celltype=CL:0002076!8.84e-16!43;CL:0000066!8.02e-13!254;CL:0000223!1.15e-10!59;CL:0002368!1.08e-07!13;CL:0002251!2.57e-07!21|ontology_enrichment_celltype_v019=CL:0002076;2.35e-15;42!CL:0002368;1.29e-10;13!CL:0002251;1.97e-10;20!CL:0002202;2.32e-07;9!CL:0002632;2.32e-07;9!CL:0000082;4.30e-07;19|ontology_enrichment_celltype_v019_2=CL:0002076,4.05e-19,42;CL:0000223,2.79e-13,58;CL:0000066,6.63e-13,253;CL:0002368,1.51e-10,13;CL:0002251,2.36e-10,20;CL:0002202,2.72e-07,9;CL:0002632,2.72e-07,9;CL:0000082,3.85e-07,19|ontology_enrichment_development_v019=UBERON:0006595;1.05e-09;86!CL:0000223;1.73e-07;58!UBERON:0001041;1.97e-07;30|ontology_enrichment_disease=DOID:305!1.57e-13!106;DOID:1749!8.11e-13!14;DOID:299!2.56e-09!25;DOID:0050687!7.70e-08!143|ontology_enrichment_disease_v019=DOID:1749;3.22e-13;14!DOID:299;1.12e-11;25!DOID:4362;6.61e-07;5|ontology_enrichment_disease_v019_2=DOID:305,4.46e-18,106;DOID:1749,1.45e-13,14;DOID:299,1.19e-11,25;DOID:0050687,1.04e-10,143;DOID:4362,7.26e-07,5|ontology_enrichment_uberon=UBERON:0004119!2.15e-23!169;UBERON:0000925!2.15e-23!169;UBERON:0006595!2.15e-23!169;UBERON:0001007!3.68e-18!155;UBERON:0001555!3.68e-18!155;UBERON:0007026!3.68e-18!155;UBERON:0004921!1.77e-15!129;UBERON:0004185!1.77e-15!129;UBERON:0005911!2.13e-13!82;UBERON:0000077!5.22e-13!130;UBERON:0001004!3.55e-11!72;UBERON:0005153!5.19e-10!37;UBERON:0000065!2.36e-09!53;UBERON:0000161!6.10e-09!35;UBERON:0000344!9.01e-09!12;UBERON:0005156!3.36e-08!59;UBERON:0000990!3.36e-08!59;UBERON:0005178!4.17e-08!34;UBERON:0002224!4.17e-08!34;UBERON:0000464!9.00e-08!104;UBERON:0001041!9.22e-08!98;UBERON:0005181!1.02e-07!35;UBERON:0000466!1.07e-07!126;UBERON:0005157!1.21e-07!51;UBERON:0000974!1.40e-07!10;UBERON:0004175!2.66e-07!25;UBERON:0000915!4.58e-07!52;UBERON:0002048!6.68e-07!22;UBERON:0000117!6.68e-07!22;UBERON:0000171!6.68e-07!22;UBERON:0000170!6.68e-07!22;UBERON:0005597!6.68e-07!22;UBERON:0000118!6.68e-07!22|ontology_enrichment_uberon_v019=UBERON:0004921;1.50e-13;33!UBERON:0005409;8.83e-13;22!UBERON:0005178;2.77e-11;34!UBERON:0002224;2.77e-11;34!UBERON:0002048;8.86e-11;22!UBERON:0000117;8.86e-11;22!UBERON:0000171;8.86e-11;22!UBERON:0000170;8.86e-11;22!UBERON:0005181;7.01e-10;35!UBERON:0000058;1.06e-09;10!UBERON:0000160;1.09e-09;17!UBERON:0005911;1.57e-09;36!UBERON:0004807;7.35e-09;22!UBERON:0001555;1.16e-08;54!UBERON:0000915;1.43e-08;52!UBERON:0000344;2.53e-08;20!UBERON:0002294;1.71e-07;7!UBERON:0001173;1.71e-07;7!UBERON:0004802;4.30e-07;19!UBERON:0000115;4.30e-07;19!UBERON:0000065;6.47e-07;44!UBERON:0002108;7.56e-07;4!UBERON:0000485;8.78e-07;7|ontology_enrichment_uberon_v019_2=UBERON:0004119,6.30e-26,160;UBERON:0000925,6.30e-26,160;UBERON:0006595,6.30e-26,160;UBERON:0001007,7.30e-24,145;UBERON:0001555,7.30e-24,145;UBERON:0007026,7.30e-24,145;UBERON:0004921,5.92e-21,118;UBERON:0005911,2.28e-15,82;UBERON:0005178,1.24e-12,34;UBERON:0002224,1.24e-12,34;UBERON:0005181,3.81e-12,35;UBERON:0005153,1.09e-11,37;UBERON:0000915,1.59e-11,52;UBERON:0005409,4.84e-11,25;UBERON:0001004,5.94e-11,74;UBERON:0002048,8.33e-11,22;UBERON:0000117,8.33e-11,22;UBERON:0000171,8.33e-11,22;UBERON:0000170,8.33e-11,22;UBERON:0005597,8.33e-11,22;UBERON:0000118,8.33e-11,22;UBERON:0001041,1.24e-10,87;UBERON:0000065,1.33e-10,54;UBERON:0005157,1.42e-10,47;UBERON:0000160,8.83e-10,17;UBERON:0000344,3.10e-08,20;UBERON:0008947,3.14e-08,38;UBERON:0003258,3.14e-08,38;UBERON:0000161,2.10e-07,36;UBERON:0004802,3.85e-07,19;UBERON:0000115,3.85e-07,19;UBERON:0005177,4.24e-07,101;UBERON:0002108,5.12e-07,4;UBERON:0011216,8.32e-07,223|phase1_expression=0,0,0,0,0,0,0,0,0,0,1.39560233594486,0,0.791300934685361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.83884244895785,2.10844143144775,1.47901604066715,0,0,0,0,0.401088894940283,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.81619850790011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382273228125229,0,0,0,0.983548850569165,0.786021525498329,0.822405995998037,0,2.28145586643513,0.473447805734733,0,0,0,0,0,0,0,0,0,0,1.03800594213442,0.802622484269139,1.04535523804977,0,0.383220493601921,0.34362744548263,0,0,0,0,0,0,0,0,0.821127996921047,0,1.06976078313403,0.724122019413995,0,0,0,0,0,0,0,0,0,0.221729397462564,0,0.458426764241994,1.09288586487763,1.85392221392215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3082821564276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15956511897978,0,2.29443676311203,0.731842236777572,0,0.116193942869518,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,2.21379189377604,0,0.658501712451753,0,1.60846355858609,0.648119116109707,0,0,0,0,0,0,0,0,3.1608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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=161291 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=27254 | |||
|TSSclassifier=S | |||
|UniProt=Q3MIR4 | |||
|association_with_transcript=-19bp_to_ENST00000355702_5end | |||
|coexpression_cluster_id=C1727 | |||
|description=CAGE_peak_7_at_TMEM30B_5end | |||
|id=chr14:61747978..61747991,- | |||
|ontology_enrichment_celltype=CL:0002076!8.84e-16!43;CL:0000066!8.02e-13!254;CL:0000223!1.15e-10!59;CL:0002368!1.08e-07!13;CL:0002251!2.57e-07!21 | |||
|ontology_enrichment_celltype_v019=CL:0002076;2.35e-15;42!CL:0002368;1.29e-10;13!CL:0002251;1.97e-10;20!CL:0002202;2.32e-07;9!CL:0002632;2.32e-07;9!CL:0000082;4.30e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,4.05e-19,42;CL:0000223,2.79e-13,58;CL:0000066,6.63e-13,253;CL:0002368,1.51e-10,13;CL:0002251,2.36e-10,20;CL:0002202,2.72e-07,9;CL:0002632,2.72e-07,9;CL:0000082,3.85e-07,19 | |||
|ontology_enrichment_development_v019=UBERON:0006595;1.05e-09;86!CL:0000223;1.73e-07;58!UBERON:0001041;1.97e-07;30 | |||
|ontology_enrichment_disease=DOID:305!1.57e-13!106;DOID:1749!8.11e-13!14;DOID:299!2.56e-09!25;DOID:0050687!7.70e-08!143 | |||
|ontology_enrichment_disease_v019=DOID:1749;3.22e-13;14!DOID:299;1.12e-11;25!DOID:4362;6.61e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:305,4.46e-18,106;DOID:1749,1.45e-13,14;DOID:299,1.19e-11,25;DOID:0050687,1.04e-10,143;DOID:4362,7.26e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.15e-23!169;UBERON:0000925!2.15e-23!169;UBERON:0006595!2.15e-23!169;UBERON:0001007!3.68e-18!155;UBERON:0001555!3.68e-18!155;UBERON:0007026!3.68e-18!155;UBERON:0004921!1.77e-15!129;UBERON:0004185!1.77e-15!129;UBERON:0005911!2.13e-13!82;UBERON:0000077!5.22e-13!130;UBERON:0001004!3.55e-11!72;UBERON:0005153!5.19e-10!37;UBERON:0000065!2.36e-09!53;UBERON:0000161!6.10e-09!35;UBERON:0000344!9.01e-09!12;UBERON:0005156!3.36e-08!59;UBERON:0000990!3.36e-08!59;UBERON:0005178!4.17e-08!34;UBERON:0002224!4.17e-08!34;UBERON:0000464!9.00e-08!104;UBERON:0001041!9.22e-08!98;UBERON:0005181!1.02e-07!35;UBERON:0000466!1.07e-07!126;UBERON:0005157!1.21e-07!51;UBERON:0000974!1.40e-07!10;UBERON:0004175!2.66e-07!25;UBERON:0000915!4.58e-07!52;UBERON:0002048!6.68e-07!22;UBERON:0000117!6.68e-07!22;UBERON:0000171!6.68e-07!22;UBERON:0000170!6.68e-07!22;UBERON:0005597!6.68e-07!22;UBERON:0000118!6.68e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0004921;1.50e-13;33!UBERON:0005409;8.83e-13;22!UBERON:0005178;2.77e-11;34!UBERON:0002224;2.77e-11;34!UBERON:0002048;8.86e-11;22!UBERON:0000117;8.86e-11;22!UBERON:0000171;8.86e-11;22!UBERON:0000170;8.86e-11;22!UBERON:0005181;7.01e-10;35!UBERON:0000058;1.06e-09;10!UBERON:0000160;1.09e-09;17!UBERON:0005911;1.57e-09;36!UBERON:0004807;7.35e-09;22!UBERON:0001555;1.16e-08;54!UBERON:0000915;1.43e-08;52!UBERON:0000344;2.53e-08;20!UBERON:0002294;1.71e-07;7!UBERON:0001173;1.71e-07;7!UBERON:0004802;4.30e-07;19!UBERON:0000115;4.30e-07;19!UBERON:0000065;6.47e-07;44!UBERON:0002108;7.56e-07;4!UBERON:0000485;8.78e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,6.30e-26,160;UBERON:0000925,6.30e-26,160;UBERON:0006595,6.30e-26,160;UBERON:0001007,7.30e-24,145;UBERON:0001555,7.30e-24,145;UBERON:0007026,7.30e-24,145;UBERON:0004921,5.92e-21,118;UBERON:0005911,2.28e-15,82;UBERON:0005178,1.24e-12,34;UBERON:0002224,1.24e-12,34;UBERON:0005181,3.81e-12,35;UBERON:0005153,1.09e-11,37;UBERON:0000915,1.59e-11,52;UBERON:0005409,4.84e-11,25;UBERON:0001004,5.94e-11,74;UBERON:0002048,8.33e-11,22;UBERON:0000117,8.33e-11,22;UBERON:0000171,8.33e-11,22;UBERON:0000170,8.33e-11,22;UBERON:0005597,8.33e-11,22;UBERON:0000118,8.33e-11,22;UBERON:0001041,1.24e-10,87;UBERON:0000065,1.33e-10,54;UBERON:0005157,1.42e-10,47;UBERON:0000160,8.83e-10,17;UBERON:0000344,3.10e-08,20;UBERON:0008947,3.14e-08,38;UBERON:0003258,3.14e-08,38;UBERON:0000161,2.10e-07,36;UBERON:0004802,3.85e-07,19;UBERON:0000115,3.85e-07,19;UBERON:0005177,4.24e-07,101;UBERON:0002108,5.12e-07,4;UBERON:0011216,8.32e-07,223 | |||
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|short_description=p7@TMEM30B | |||
}} |
Revision as of 04:59, 11 September 2013
Short description: | p7@TMEM30B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_TMEM30B_5end |
Coexpression cluster: | C1727_colon_small_stomach_papillotubular_breast_duodenum_prostate |
Association with transcript: | -19bp_to_ENST00000355702_5end |
EntrezGene: | TMEM30B |
HGNC: | 27254 |
UniProt: | Q3MIR4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 4.05e-19 | 42 |
endodermal cell | 2.79e-13 | 58 |
epithelial cell | 6.63e-13 | 253 |
respiratory epithelial cell | 1.51e-10 | 13 |
epithelial cell of alimentary canal | 2.36e-10 | 20 |
epithelial cell of tracheobronchial tree | 2.72e-07 | 9 |
epithelial cell of lower respiratory tract | 2.72e-07 | 9 |
epithelial cell of lung | 3.85e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 6.30e-26 | 160 |
endoderm | 6.30e-26 | 160 |
presumptive endoderm | 6.30e-26 | 160 |
digestive system | 7.30e-24 | 145 |
digestive tract | 7.30e-24 | 145 |
primitive gut | 7.30e-24 | 145 |
subdivision of digestive tract | 5.92e-21 | 118 |
endo-epithelium | 2.28e-15 | 82 |
thoracic cavity element | 1.24e-12 | 34 |
thoracic cavity | 1.24e-12 | 34 |
thoracic segment organ | 3.81e-12 | 35 |
epithelial bud | 1.09e-11 | 37 |
thoracic segment of trunk | 1.59e-11 | 52 |
gastrointestinal system | 4.84e-11 | 25 |
respiratory system | 5.94e-11 | 74 |
lung | 8.33e-11 | 22 |
respiratory tube | 8.33e-11 | 22 |
respiration organ | 8.33e-11 | 22 |
pair of lungs | 8.33e-11 | 22 |
lung primordium | 8.33e-11 | 22 |
lung bud | 8.33e-11 | 22 |
foregut | 1.24e-10 | 87 |
respiratory tract | 1.33e-10 | 54 |
epithelial fold | 1.42e-10 | 47 |
intestine | 8.83e-10 | 17 |
mucosa | 3.10e-08 | 20 |
respiratory primordium | 3.14e-08 | 38 |
endoderm of foregut | 3.14e-08 | 38 |
orifice | 2.10e-07 | 36 |
respiratory tract epithelium | 3.85e-07 | 19 |
lung epithelium | 3.85e-07 | 19 |
trunk region element | 4.24e-07 | 101 |
small intestine | 5.12e-07 | 4 |
organ system subdivision | 8.32e-07 | 223 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 4.46e-18 | 106 |
squamous cell carcinoma | 1.45e-13 | 14 |
adenocarcinoma | 1.19e-11 | 25 |
cell type cancer | 1.04e-10 | 143 |
cervical cancer | 7.26e-07 | 5 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.