FFCP PHASE1:Hg19::chr15:39888129..39888145,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C142|description=CAGE_peak_at_chr15:39888129..39888145,+|id=chr15:39888129..39888145,+|ontology_enrichment_celltype=CL:0002371!1.18e-17!591;CL:0000144!1.02e-14!625;CL:0000055!5.16e-14!180;CL:0000057!1.55e-13!75;CL:0000548!2.21e-11!679;CL:0000004!2.21e-11!679;CL:0000255!2.21e-11!679;CL:0000012!6.54e-11!682;CL:0000222!2.04e-10!119;CL:0000115!2.42e-09!35;CL:0000220!3.84e-09!246;CL:0002139!4.51e-09!24;CL:0002321!8.58e-09!248;CL:0002334!3.73e-08!12;CL:0002078!6.98e-08!44;CL:0002620!5.24e-07!23|ontology_enrichment_celltype_v019=CL:0002139;8.82e-12;24!CL:0000115;2.42e-11;36!CL:0002334;1.13e-10;12!CL:0002620;1.31e-10;23!CL:0002138;8.43e-08;6!CL:0002078;3.65e-07;45!CL:0000349;5.41e-07;19|ontology_enrichment_celltype_v019_2=CL:0000057,1.34e-16,76;CL:0000115,8.27e-13,36;CL:0002139,9.64e-12,24;CL:0002620,1.06e-10,23;CL:0002334,1.98e-10,12;CL:0002078,6.83e-10,45;CL:0005020,1.10e-07,6;CL:0002138,1.10e-07,6;CL:0005022,1.10e-07,6;CL:0000213,3.42e-07,58;CL:0000215,3.42e-07,58;CL:0000723,4.06e-07,433;CL:0000048,6.60e-07,427;CL:0000349,7.07e-07,19|ontology_enrichment_development_v019=CL:0005022;8.43e-08;6|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:17;8.31e-08;5!DOID:450;8.31e-08;5!DOID:66;8.31e-08;5!DOID:423;8.31e-08;5!DOID:0080000;8.31e-08;5!DOID:11722;8.31e-08;5|ontology_enrichment_disease_v019_2=DOID:17,5.98e-08,5;DOID:450,5.98e-08,5;DOID:66,5.98e-08,5;DOID:423,5.98e-08,5;DOID:0080000,5.98e-08,5;DOID:11722,5.98e-08,5|ontology_enrichment_uberon=UBERON:0002049!1.09e-14!79;UBERON:0007798!1.09e-14!79;UBERON:0004872!1.25e-13!84;UBERON:0004535!1.98e-13!110;UBERON:0000055!2.14e-13!69;UBERON:0001009!2.37e-13!113;UBERON:0001981!5.61e-12!60;UBERON:0007500!5.61e-12!60;UBERON:0004537!5.61e-12!60;UBERON:0006965!5.61e-12!60;UBERON:0000468!6.96e-11!659;UBERON:0003914!1.57e-10!118;UBERON:0000467!1.27e-09!625;UBERON:0000480!1.76e-09!626;UBERON:0003102!2.04e-08!95;UBERON:0002199!2.15e-08!45;UBERON:0002416!2.15e-08!45;UBERON:0001637!6.88e-08!42;UBERON:0003509!6.88e-08!42;UBERON:0004572!6.88e-08!42;UBERON:0000490!7.55e-08!138;UBERON:0002097!8.47e-08!40;UBERON:0000914!1.20e-07!83;UBERON:0002329!1.20e-07!83;UBERON:0003077!1.20e-07!83;UBERON:0003059!1.20e-07!83;UBERON:0007282!1.20e-07!83;UBERON:0009618!1.20e-07!83;UBERON:0007285!1.20e-07!83;UBERON:0000486!3.08e-07!82;UBERON:0002100!3.72e-07!216;UBERON:0005256!8.85e-07!143|ontology_enrichment_uberon_v019=UBERON:0003688;1.45e-09;6!UBERON:0002358;1.45e-09;6!UBERON:0003684;1.45e-09;6!UBERON:0001178;1.45e-09;6!UBERON:0005631;5.11e-09;10!UBERON:0000158;5.11e-09;10!UBERON:0002097;8.58e-09;41!UBERON:0000055;4.19e-08;65!UBERON:0001637;5.01e-08;42!UBERON:0003509;5.01e-08;42!UBERON:0004572;5.01e-08;42!UBERON:0002199;7.93e-08;46!UBERON:0002416;7.93e-08;46!UBERON:0007500;3.64e-07;56!UBERON:0001981;3.64e-07;56!UBERON:0004537;3.64e-07;56!UBERON:0000487;3.69e-07;22!UBERON:0004573;5.09e-07;33!UBERON:0004571;5.09e-07;33!UBERON:0000305;8.71e-07;7|ontology_enrichment_uberon_v019_2=UBERON:0000055,2.96e-14,68;UBERON:0002049,7.18e-12,78;UBERON:0007798,7.18e-12,78;UBERON:0002097,2.62e-11,41;UBERON:0002199,3.19e-11,46;UBERON:0002416,3.19e-11,46;UBERON:0007500,3.90e-11,59;UBERON:0001981,3.90e-11,59;UBERON:0004537,3.90e-11,59;UBERON:0006965,3.90e-11,59;UBERON:0003688,1.52e-09,6;UBERON:0002358,1.52e-09,6;UBERON:0003684,1.52e-09,6;UBERON:0001178,1.52e-09,6;UBERON:0004872,2.68e-09,83;UBERON:0001637,3.31e-09,42;UBERON:0003509,3.31e-09,42;UBERON:0004572,3.31e-09,42;UBERON:0004871,3.98e-08,8;UBERON:0004923,5.33e-08,66;UBERON:0004535,1.22e-07,109;UBERON:0005631,2.15e-07,14;UBERON:0000158,2.15e-07,14;UBERON:0000487,3.11e-07,22;UBERON:0001009,3.54e-07,112;UBERON:0004573,4.37e-07,33;UBERON:0004571,4.37e-07,33;UBERON:0000305,6.57e-07,7|phase1_expression=9.6289541013395,15.2011371962598,5.63817616383885,4.00293193412522,4.91657203870017,8.72338524100369,0,0.631719873426831,0.261185628199839,1.72013755551056,0.697801167972428,3.49506195408276,1.84636884759917,0.247532705920093,1.32558950291166,4.03395087871065,1.80808358407193,2.19093027116212,4.87932798790507,0,0.408001382488506,0.626909442956176,0,0.273748850145768,0.251085279189606,0,0,0,0.393364276848904,0,0.309632246632152,0,1.204823675113,0.739508020333575,0,0,0,0.553995408531877,1.60435557976113,0,0,0,0,0,0,0,1.62700325833979,0,0,1.7261543539329,0.256160706529101,0.236482229888585,4.13694816883942,0,0,2.07066573496865,0.272906150057846,0.224723484445085,2.14258724659632,0,0,0.659702600373432,0,0.426224750532694,6.67481248845743,0,0.622822248995575,3.26623264833766,1.0429658368404,0.217188844705117,7.87019353423379,0.736555271975129,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.1903433156981,0,0.639312809217652,0.722878304769133,2.50668955317945,0.724232594804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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C142 | |||
|description=CAGE_peak_at_chr15:39888129..39888145,+ | |||
|id=chr15:39888129..39888145,+ | |||
|ontology_enrichment_celltype=CL:0002371!1.18e-17!591;CL:0000144!1.02e-14!625;CL:0000055!5.16e-14!180;CL:0000057!1.55e-13!75;CL:0000548!2.21e-11!679;CL:0000004!2.21e-11!679;CL:0000255!2.21e-11!679;CL:0000012!6.54e-11!682;CL:0000222!2.04e-10!119;CL:0000115!2.42e-09!35;CL:0000220!3.84e-09!246;CL:0002139!4.51e-09!24;CL:0002321!8.58e-09!248;CL:0002334!3.73e-08!12;CL:0002078!6.98e-08!44;CL:0002620!5.24e-07!23 | |||
|ontology_enrichment_celltype_v019=CL:0002139;8.82e-12;24!CL:0000115;2.42e-11;36!CL:0002334;1.13e-10;12!CL:0002620;1.31e-10;23!CL:0002138;8.43e-08;6!CL:0002078;3.65e-07;45!CL:0000349;5.41e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.34e-16,76;CL:0000115,8.27e-13,36;CL:0002139,9.64e-12,24;CL:0002620,1.06e-10,23;CL:0002334,1.98e-10,12;CL:0002078,6.83e-10,45;CL:0005020,1.10e-07,6;CL:0002138,1.10e-07,6;CL:0005022,1.10e-07,6;CL:0000213,3.42e-07,58;CL:0000215,3.42e-07,58;CL:0000723,4.06e-07,433;CL:0000048,6.60e-07,427;CL:0000349,7.07e-07,19 | |||
|ontology_enrichment_development_v019=CL:0005022;8.43e-08;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;8.31e-08;5!DOID:450;8.31e-08;5!DOID:66;8.31e-08;5!DOID:423;8.31e-08;5!DOID:0080000;8.31e-08;5!DOID:11722;8.31e-08;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,5.98e-08,5;DOID:450,5.98e-08,5;DOID:66,5.98e-08,5;DOID:423,5.98e-08,5;DOID:0080000,5.98e-08,5;DOID:11722,5.98e-08,5 | |||
|ontology_enrichment_uberon=UBERON:0002049!1.09e-14!79;UBERON:0007798!1.09e-14!79;UBERON:0004872!1.25e-13!84;UBERON:0004535!1.98e-13!110;UBERON:0000055!2.14e-13!69;UBERON:0001009!2.37e-13!113;UBERON:0001981!5.61e-12!60;UBERON:0007500!5.61e-12!60;UBERON:0004537!5.61e-12!60;UBERON:0006965!5.61e-12!60;UBERON:0000468!6.96e-11!659;UBERON:0003914!1.57e-10!118;UBERON:0000467!1.27e-09!625;UBERON:0000480!1.76e-09!626;UBERON:0003102!2.04e-08!95;UBERON:0002199!2.15e-08!45;UBERON:0002416!2.15e-08!45;UBERON:0001637!6.88e-08!42;UBERON:0003509!6.88e-08!42;UBERON:0004572!6.88e-08!42;UBERON:0000490!7.55e-08!138;UBERON:0002097!8.47e-08!40;UBERON:0000914!1.20e-07!83;UBERON:0002329!1.20e-07!83;UBERON:0003077!1.20e-07!83;UBERON:0003059!1.20e-07!83;UBERON:0007282!1.20e-07!83;UBERON:0009618!1.20e-07!83;UBERON:0007285!1.20e-07!83;UBERON:0000486!3.08e-07!82;UBERON:0002100!3.72e-07!216;UBERON:0005256!8.85e-07!143 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;1.45e-09;6!UBERON:0002358;1.45e-09;6!UBERON:0003684;1.45e-09;6!UBERON:0001178;1.45e-09;6!UBERON:0005631;5.11e-09;10!UBERON:0000158;5.11e-09;10!UBERON:0002097;8.58e-09;41!UBERON:0000055;4.19e-08;65!UBERON:0001637;5.01e-08;42!UBERON:0003509;5.01e-08;42!UBERON:0004572;5.01e-08;42!UBERON:0002199;7.93e-08;46!UBERON:0002416;7.93e-08;46!UBERON:0007500;3.64e-07;56!UBERON:0001981;3.64e-07;56!UBERON:0004537;3.64e-07;56!UBERON:0000487;3.69e-07;22!UBERON:0004573;5.09e-07;33!UBERON:0004571;5.09e-07;33!UBERON:0000305;8.71e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000055,2.96e-14,68;UBERON:0002049,7.18e-12,78;UBERON:0007798,7.18e-12,78;UBERON:0002097,2.62e-11,41;UBERON:0002199,3.19e-11,46;UBERON:0002416,3.19e-11,46;UBERON:0007500,3.90e-11,59;UBERON:0001981,3.90e-11,59;UBERON:0004537,3.90e-11,59;UBERON:0006965,3.90e-11,59;UBERON:0003688,1.52e-09,6;UBERON:0002358,1.52e-09,6;UBERON:0003684,1.52e-09,6;UBERON:0001178,1.52e-09,6;UBERON:0004872,2.68e-09,83;UBERON:0001637,3.31e-09,42;UBERON:0003509,3.31e-09,42;UBERON:0004572,3.31e-09,42;UBERON:0004871,3.98e-08,8;UBERON:0004923,5.33e-08,66;UBERON:0004535,1.22e-07,109;UBERON:0005631,2.15e-07,14;UBERON:0000158,2.15e-07,14;UBERON:0000487,3.11e-07,22;UBERON:0001009,3.54e-07,112;UBERON:0004573,4.37e-07,33;UBERON:0004571,4.37e-07,33;UBERON:0000305,6.57e-07,7 | |||
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| |||
|short_description=p@chr15:39888129..39888145,+ | |||
}} |
Revision as of 06:51, 11 September 2013
Short description: | p@chr15:39888129..39888145, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr15:39888129..39888145, + |
Coexpression cluster: | C142_Preadipocyte_Fibroblast_hepatic_Ewing_Adipocyte_Olfactory_Hair |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.34e-16 | 76 |
endothelial cell | 8.27e-13 | 36 |
endothelial cell of vascular tree | 9.64e-12 | 24 |
skin fibroblast | 1.06e-10 | 23 |
preadipocyte | 1.98e-10 | 12 |
meso-epithelial cell | 6.83e-10 | 45 |
lymphangioblast | 1.10e-07 | 6 |
endothelial cell of lymphatic vessel | 1.10e-07 | 6 |
vascular lymphangioblast | 1.10e-07 | 6 |
lining cell | 3.42e-07 | 58 |
barrier cell | 3.42e-07 | 58 |
somatic stem cell | 4.06e-07 | 433 |
multi fate stem cell | 6.60e-07 | 427 |
extraembryonic cell | 7.07e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
vessel | 2.96e-14 | 68 |
vasculature | 7.18e-12 | 78 |
vascular system | 7.18e-12 | 78 |
skin of body | 2.62e-11 | 41 |
integument | 3.19e-11 | 46 |
integumental system | 3.19e-11 | 46 |
epithelial tube open at both ends | 3.90e-11 | 59 |
blood vessel | 3.90e-11 | 59 |
blood vasculature | 3.90e-11 | 59 |
vascular cord | 3.90e-11 | 59 |
omentum | 1.52e-09 | 6 |
peritoneum | 1.52e-09 | 6 |
abdominal cavity | 1.52e-09 | 6 |
visceral peritoneum | 1.52e-09 | 6 |
splanchnic layer of lateral plate mesoderm | 2.68e-09 | 83 |
artery | 3.31e-09 | 42 |
arterial blood vessel | 3.31e-09 | 42 |
arterial system | 3.31e-09 | 42 |
somatic layer of lateral plate mesoderm | 3.98e-08 | 8 |
organ component layer | 5.33e-08 | 66 |
cardiovascular system | 1.22e-07 | 109 |
extraembryonic membrane | 2.15e-07 | 14 |
membranous layer | 2.15e-07 | 14 |
simple squamous epithelium | 3.11e-07 | 22 |
circulatory system | 3.54e-07 | 112 |
systemic artery | 4.37e-07 | 33 |
systemic arterial system | 4.37e-07 | 33 |
amnion | 6.57e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 5.98e-08 | 5 |
myotonic disease | 5.98e-08 | 5 |
muscle tissue disease | 5.98e-08 | 5 |
myopathy | 5.98e-08 | 5 |
muscular disease | 5.98e-08 | 5 |
myotonic dystrophy | 5.98e-08 | 5 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.