FFCP PHASE1:Hg19::chr15:39910770..39910804,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr15:39910770..39910804,-|id=chr15:39910770..39910804,-|ontology_enrichment_celltype=CL:0002076!3.06e-24!43;CL:0002368!5.25e-19!13;CL:0000223!5.44e-18!59;CL:0002159!2.52e-14!13;CL:0000066!7.89e-14!254;CL:0002328!2.28e-10!3;CL:0002621!2.42e-10!3;CL:0002166!2.50e-10!3;CL:0002251!4.94e-10!21;CL:0002202!6.06e-09!9;CL:0002632!6.06e-09!9;CL:0000240!2.11e-08!6;CL:0000311!2.11e-08!6;CL:0000079!2.11e-08!6;CL:0000237!2.11e-08!6;CL:0000036!2.11e-08!6;CL:0000357!2.11e-08!6;CL:0000114!2.11e-08!6;CL:0000244!8.56e-08!4;CL:0000731!8.56e-08!4;CL:0002077!1.10e-07!33|ontology_enrichment_celltype_v019=CL:0002368;2.33e-33;13!CL:0002076;4.22e-23;42!CL:0002621;4.24e-21;3!CL:0002202;7.87e-13;9!CL:0002632;7.87e-13;9!CL:0002159;3.46e-12;14!CL:0002328;1.96e-10;3!CL:0000307;1.96e-10;3!CL:0002166;2.65e-10;3!CL:0002231;3.05e-10;3!CL:0002327;3.77e-08;4!CL:0000244;5.73e-08;4!CL:0000731;5.73e-08;4!CL:0002077;9.61e-08;34|ontology_enrichment_celltype_v019_2=CL:0002368,1.26e-33,13;CL:0002076,1.24e-29,42;CL:0002621,5.80e-21,3;CL:0000223,1.01e-20,58;CL:0000066,6.75e-17,253;CL:0002202,6.16e-13,9;CL:0002632,6.16e-13,9;CL:0002159,4.29e-12,14;CL:0002328,1.55e-10,3;CL:0000068,1.70e-10,3;CL:0000069,1.70e-10,3;CL:0000307,1.70e-10,3;CL:0000377,1.70e-10,3;CL:0002166,2.47e-10,3;CL:0002231,2.98e-10,3;CL:0002077,3.31e-09,34;CL:0002327,3.97e-08,4;CL:0002321,4.19e-08,250;CL:0000244,6.04e-08,4;CL:0000731,6.04e-08,4|ontology_enrichment_development_v019=CL:0000223;2.29e-12;58!CL:0000377;1.96e-10;3|ontology_enrichment_disease=DOID:1749!3.25e-07!14|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004815!2.28e-10!3;UBERON:0002031!2.28e-10!3;UBERON:0001949!2.42e-10!3;UBERON:0000161!4.66e-08!35;UBERON:0002185!7.29e-08!4;UBERON:0001708!7.81e-08!4;UBERON:0001704!7.81e-08!4;UBERON:0004119!1.10e-07!169;UBERON:0000925!1.10e-07!169;UBERON:0006595!1.10e-07!169;UBERON:0001004!2.72e-07!72|ontology_enrichment_uberon_v019=UBERON:0001949;4.24e-21;3!UBERON:0000486;2.94e-14;12!UBERON:0004815;1.96e-10;3!UBERON:0002031;1.96e-10;3!UBERON:0003929;2.33e-09;7!UBERON:0003350;3.01e-08;8!UBERON:0001828;3.01e-08;8!UBERON:0001911;3.77e-08;4!UBERON:0001708;6.15e-08;4!UBERON:0008895;6.15e-08;4!UBERON:0007196;9.61e-08;15!UBERON:0001558;9.61e-08;15!UBERON:0004807;1.02e-07;22!UBERON:0005911;5.03e-07;36|ontology_enrichment_uberon_v019_2=UBERON:0001949,5.80e-21,3;UBERON:0001004,2.78e-11,74;UBERON:0004815,1.55e-10,3;UBERON:0002031,1.55e-10,3;UBERON:0003350,3.37e-08,8;UBERON:0001828,3.37e-08,8;UBERON:0001911,3.97e-08,4;UBERON:0005333,3.97e-08,4;UBERON:0008425,3.97e-08,4;UBERON:0005311,3.97e-08,4;UBERON:0001708,5.84e-08,4;UBERON:0008895,5.84e-08,4;UBERON:0004119,6.57e-08,160;UBERON:0000925,6.57e-08,160;UBERON:0006595,6.57e-08,160;UBERON:0007196,8.34e-08,15;UBERON:0001558,8.34e-08,15;UBERON:0000065,3.04e-07,54|phase1_expression=0.181678379270557,0,0.140954404095971,0,0,0,0,0.631719873426831,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164201178899891,0,0,0,0.154816123316076,2.75826367343678,0.30120591877825,9.61360426433648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.18577172975525,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872188104285069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.12586938479627,3.81844568827169,1.43402297694502,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.768251997860379,2.24803506515239,0.502644862058154,0.740707561268237,0,0,0,0,0,0,0,0,0.790204397959275,0,0,0,0,4.68669169933885,2.51973192298289,0.567100388969546,4.47792613514241,6.1033127087932,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306923946576125,0,0.256278298511402,1.02341449813341,0,0,0,0,0,0,0,0,3.80962293576241,2.3941057123333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082509499920588,2.29706215198469,0,0,0,0,0,0,0,0,0,0,7.43782119124401,1.72971060628596,3.70076866234294,2.93357564481095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141405431953713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.42976704710018,2.68120910214315,0,0,0,5.05414427002877,0.443430153536676,2.29723400206959,0,0,0,0,0,0,0,0,0,0,1.47024129588619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222886768554957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,2.3438498497671,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278847488557207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293977192243133,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144054797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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr15:39910770..39910804,- | |||
|id=chr15:39910770..39910804,- | |||
|ontology_enrichment_celltype=CL:0002076!3.06e-24!43;CL:0002368!5.25e-19!13;CL:0000223!5.44e-18!59;CL:0002159!2.52e-14!13;CL:0000066!7.89e-14!254;CL:0002328!2.28e-10!3;CL:0002621!2.42e-10!3;CL:0002166!2.50e-10!3;CL:0002251!4.94e-10!21;CL:0002202!6.06e-09!9;CL:0002632!6.06e-09!9;CL:0000240!2.11e-08!6;CL:0000311!2.11e-08!6;CL:0000079!2.11e-08!6;CL:0000237!2.11e-08!6;CL:0000036!2.11e-08!6;CL:0000357!2.11e-08!6;CL:0000114!2.11e-08!6;CL:0000244!8.56e-08!4;CL:0000731!8.56e-08!4;CL:0002077!1.10e-07!33 | |||
|ontology_enrichment_celltype_v019=CL:0002368;2.33e-33;13!CL:0002076;4.22e-23;42!CL:0002621;4.24e-21;3!CL:0002202;7.87e-13;9!CL:0002632;7.87e-13;9!CL:0002159;3.46e-12;14!CL:0002328;1.96e-10;3!CL:0000307;1.96e-10;3!CL:0002166;2.65e-10;3!CL:0002231;3.05e-10;3!CL:0002327;3.77e-08;4!CL:0000244;5.73e-08;4!CL:0000731;5.73e-08;4!CL:0002077;9.61e-08;34 | |||
|ontology_enrichment_celltype_v019_2=CL:0002368,1.26e-33,13;CL:0002076,1.24e-29,42;CL:0002621,5.80e-21,3;CL:0000223,1.01e-20,58;CL:0000066,6.75e-17,253;CL:0002202,6.16e-13,9;CL:0002632,6.16e-13,9;CL:0002159,4.29e-12,14;CL:0002328,1.55e-10,3;CL:0000068,1.70e-10,3;CL:0000069,1.70e-10,3;CL:0000307,1.70e-10,3;CL:0000377,1.70e-10,3;CL:0002166,2.47e-10,3;CL:0002231,2.98e-10,3;CL:0002077,3.31e-09,34;CL:0002327,3.97e-08,4;CL:0002321,4.19e-08,250;CL:0000244,6.04e-08,4;CL:0000731,6.04e-08,4 | |||
|ontology_enrichment_development_v019=CL:0000223;2.29e-12;58!CL:0000377;1.96e-10;3 | |||
|ontology_enrichment_disease=DOID:1749!3.25e-07!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004815!2.28e-10!3;UBERON:0002031!2.28e-10!3;UBERON:0001949!2.42e-10!3;UBERON:0000161!4.66e-08!35;UBERON:0002185!7.29e-08!4;UBERON:0001708!7.81e-08!4;UBERON:0001704!7.81e-08!4;UBERON:0004119!1.10e-07!169;UBERON:0000925!1.10e-07!169;UBERON:0006595!1.10e-07!169;UBERON:0001004!2.72e-07!72 | |||
|ontology_enrichment_uberon_v019=UBERON:0001949;4.24e-21;3!UBERON:0000486;2.94e-14;12!UBERON:0004815;1.96e-10;3!UBERON:0002031;1.96e-10;3!UBERON:0003929;2.33e-09;7!UBERON:0003350;3.01e-08;8!UBERON:0001828;3.01e-08;8!UBERON:0001911;3.77e-08;4!UBERON:0001708;6.15e-08;4!UBERON:0008895;6.15e-08;4!UBERON:0007196;9.61e-08;15!UBERON:0001558;9.61e-08;15!UBERON:0004807;1.02e-07;22!UBERON:0005911;5.03e-07;36 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,5.80e-21,3;UBERON:0001004,2.78e-11,74;UBERON:0004815,1.55e-10,3;UBERON:0002031,1.55e-10,3;UBERON:0003350,3.37e-08,8;UBERON:0001828,3.37e-08,8;UBERON:0001911,3.97e-08,4;UBERON:0005333,3.97e-08,4;UBERON:0008425,3.97e-08,4;UBERON:0005311,3.97e-08,4;UBERON:0001708,5.84e-08,4;UBERON:0008895,5.84e-08,4;UBERON:0004119,6.57e-08,160;UBERON:0000925,6.57e-08,160;UBERON:0006595,6.57e-08,160;UBERON:0007196,8.34e-08,15;UBERON:0001558,8.34e-08,15;UBERON:0000065,3.04e-07,54 | |||
|phase1_expression=0.181678379270557,0,0.140954404095971,0,0,0,0,0.631719873426831,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164201178899891,0,0,0,0.154816123316076,2.75826367343678,0.30120591877825,9.61360426433648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.18577172975525,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872188104285069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.12586938479627,3.81844568827169,1.43402297694502,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.768251997860379,2.24803506515239,0.502644862058154,0.740707561268237,0,0,0,0,0,0,0,0,0.790204397959275,0,0,0,0,4.68669169933885,2.51973192298289,0.567100388969546,4.47792613514241,6.1033127087932,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306923946576125,0,0.256278298511402,1.02341449813341,0,0,0,0,0,0,0,0,3.80962293576241,2.3941057123333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082509499920588,2.29706215198469,0,0,0,0,0,0,0,0,0,0,7.43782119124401,1.72971060628596,3.70076866234294,2.93357564481095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141405431953713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.42976704710018,2.68120910214315,0,0,0,5.05414427002877,0.443430153536676,2.29723400206959,0,0,0,0,0,0,0,0,0,0,1.47024129588619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222886768554957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,2.3438498497671,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278847488557207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293977192243133,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14405479798815,0,0,0,0,0,0,0,0,0,0,0.262887354279314,0,0,0,0,0,0,0,0,0,0,0,0,0.196854963029498,0,0,0,0,0,0,0,0.77380195455795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.55336503108073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343395705182793,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265729680626726,0,0,0,0,0,0,0,0,0,4.75590326246111,6.22077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196295437002051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0.115233987555779,0,0,0,0,0.111231401892069,0,0,0,0,0,0,0,0,0,0,0,1.03608082081518,0.17071847709395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169927114687817,0,0,0.0999411559249289,0.535661815816973,0.705789743431384,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0645889098360061,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr15:39910770..39910804,- | |||
}} |
Revision as of 06:53, 11 September 2013
Short description: | p@chr15:39910770..39910804, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr15:39910770..39910804, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
respiratory epithelial cell | 1.26e-33 | 13 |
endo-epithelial cell | 1.24e-29 | 42 |
gingival epithelial cell | 5.80e-21 | 3 |
endodermal cell | 1.01e-20 | 58 |
epithelial cell | 6.75e-17 | 253 |
epithelial cell of tracheobronchial tree | 6.16e-13 | 9 |
epithelial cell of lower respiratory tract | 6.16e-13 | 9 |
general ecto-epithelial cell | 4.29e-12 | 14 |
bronchial epithelial cell | 1.55e-10 | 3 |
duct epithelial cell | 1.70e-10 | 3 |
branched duct epithelial cell | 1.70e-10 | 3 |
tracheal epithelial cell | 1.70e-10 | 3 |
tracheoblast | 1.70e-10 | 3 |
epithelial cell of Malassez | 2.47e-10 | 3 |
epithelial cell of prostate | 2.98e-10 | 3 |
ecto-epithelial cell | 3.31e-09 | 34 |
mammary gland epithelial cell | 3.97e-08 | 4 |
embryonic cell | 4.19e-08 | 250 |
transitional epithelial cell | 6.04e-08 | 4 |
urothelial cell | 6.04e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 5.80e-21 | 3 |
respiratory system | 2.78e-11 | 74 |
lower respiratory tract epithelium | 1.55e-10 | 3 |
epithelium of bronchus | 1.55e-10 | 3 |
epithelium of mucosa | 3.37e-08 | 8 |
gingiva | 3.37e-08 | 8 |
mammary gland | 3.97e-08 | 4 |
mammary bud | 3.97e-08 | 4 |
mammary ridge | 3.97e-08 | 4 |
mammary placode | 3.97e-08 | 4 |
jaw skeleton | 5.84e-08 | 4 |
splanchnocranium | 5.84e-08 | 4 |
endoderm-derived structure | 6.57e-08 | 160 |
endoderm | 6.57e-08 | 160 |
presumptive endoderm | 6.57e-08 | 160 |
tracheobronchial tree | 8.34e-08 | 15 |
lower respiratory tract | 8.34e-08 | 15 |
respiratory tract | 3.04e-07 | 54 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.