FFCP PHASE1:Hg19::chr17:7761189..7761200,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=84316|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=28212|TSSclassifier=S|UniProt=Q9BRA0|association_with_transcript=-17bp_to_ENST00000333775,NM_032356,uc002gja.2_5end|coexpression_cluster_id=C2|description=CAGE_peak_7_at_LSMD1_5end|id=chr17:7761189..7761200,-|ontology_enrichment_celltype=CL:0000860!4.91e-20!45;CL:0002057!3.80e-18!42;CL:0000766!2.48e-15!76;CL:0000738!2.83e-14!140;CL:0000839!7.15e-13!70;CL:0002031!1.37e-12!124;CL:0002087!8.42e-12!119;CL:0002194!1.06e-11!63;CL:0000576!1.06e-11!63;CL:0000040!1.06e-11!63;CL:0000559!1.06e-11!63;CL:0000557!1.38e-11!71;CL:0002032!3.54e-11!165;CL:0000837!3.54e-11!165;CL:0000988!5.58e-11!182;CL:0000037!5.86e-11!172;CL:0000566!5.86e-11!172;CL:0002009!7.97e-11!65;CL:0000763!9.11e-10!112;CL:0000049!9.11e-10!112|ontology_enrichment_celltype_v019=CL:0000094;1.36e-16;8!CL:0000860;4.54e-13;33!CL:0002057;4.54e-13;33!CL:0000771;5.02e-12;2!CL:0000081;5.44e-12;11!CL:0000473;1.87e-09;39!CL:0000234;1.87e-09;39!CL:0000766;3.50e-09;69!CL:0000775;7.12e-08;3!CL:0000623;1.33e-07;3!CL:0000576;5.43e-07;48|ontology_enrichment_celltype_v019_2=CL:0000738,2.34e-19,136;CL:0000766,1.52e-18,72;CL:0000094,9.87e-17,8;CL:0000037,1.33e-14,168;CL:0002032,4.28e-14,161;CL:0000837,4.28e-14,161;CL:0000988,1.41e-13,177;CL:0000860,3.96e-12,42;CL:0002057,3.96e-12,42;CL:0002031,4.11e-12,120;CL:0000081,4.31e-12,11;CL:0000771,5.07e-12,2;CL:0000763,4.23e-11,108;CL:0000049,4.23e-11,108;CL:0000473,2.36e-10,48;CL:0000234,2.36e-10,48;CL:0002087,5.85e-10,115;CL:0000839,6.77e-10,66;CL:0000557,1.03e-09,67;CL:0000775,4.99e-08,3;CL:0002194,7.10e-08,59;CL:0000576,7.10e-08,59;CL:0000040,7.10e-08,59;CL:0000559,7.10e-08,59;CL:0000623,1.09e-07,3;CL:0000825,1.09e-07,3;CL:0002009,1.48e-07,61|ontology_enrichment_development_v019=CL:0002057;7.74e-09;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002371!7.01e-09!80;UBERON:0002193!8.30e-09!112;UBERON:0001474!9.21e-09!86;UBERON:0002390!2.47e-08!102;UBERON:0003061!2.47e-08!102;UBERON:0002405!7.43e-08!115;UBERON:0001737!4.93e-07!9|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.82e-08,76;UBERON:0001474,1.71e-07,82|phase1_expression=0.181678379270557,0.428201047781966,0.140954404095971,0,0.446961094427288,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0.602694528023977,0,0,0,0.204000691244253,0,0,0.136874425072884,0,0.152826811495903,0.0821005894499457,0.236132343941038,2.36018566109342,0,0.309632246632152,0,0,0,0.232401601740905,0.142169232487422,0,1.10799081706375,0.601633342410425,0.868043482863407,0,0,0,0.436194716338694,0.377875943688809,0.242584061187816,0.232429036905685,0.411167888021826,1.54853185447552,0.28769239232215,1.0246428261164,1.18241114944293,1.03423704220986,0.645484683583826,1.35426486594342,0.188242339542605,0.545812300115692,0.674170453335254,0.918251677112708,0.641858054152187,1.91801137739712,0,0.199463657621632,0.852449501065388,0.580418477257168,1.13477044938228,1.86846674698672,1.00499466102697,0.521482918420201,1.95469960234605,0.605399502633369,0.368277635987565,0.949387162322653,0.211255286311942,0.637812899895131,0,0.22465726229299,0.300353785683013,0.32145117339416,0.285012743741249,0,0.365328307529268,0,0,0,0.426730222566507,0,0,0,0,0,1.76171156811282,0.382273228125229,0,0,0,0.983548850569165,1.17903228824749,2.05601498999509,0,0,0,0,0,0.294605907474837,0,0.270803863765016,0,0,0,0,0,0,0,0,0,0.383220493601921,0.34362744548263,0.253019692019503,0,0,0,0.150575119077773,0,0,0.236777252044017,0,0.604820229674197,1.33720097891754,1.88271725047639,0,0,0.255725123687061,0,0,0.144846518960824,0,0,0,0,0,0.785874452986276,0,0.370784442784429,0.324547393654683,0,0,0.715471872916026,1.14398982156026,0,0,0,0,0,0,0.550236083880135,0.417989933073621,0.258416759169329,0.35576626268671,0,0,0,0.24406205754817,0,0,0,0.22452937262617,0.337834441449967,0,0,0,19.7670626154095,7.75560528296651,0,0,0,0.132409180813219,0,0,0,0,0.74000264525148,0,0.269421344139376,0,0,0,0,0,0,0,0.117434498643765,0,0,0.204154171254893,0,0.516628905878827,0,0.247266929278557,0,0,0.168336113954066,0,0,0,0,0,0.567160915800105,0.358779271377724,0,0,0,0.103052529238439,0,0,0,0,0.252433774244115,0,0.161646056818812,0.355009592516614,0.10075209822764,0.169560592310488,0.193260853163297,0,0.573609190778008,0.121973706129595,0,0,0,0.252320850875628,0,0,0,0,0,0,1.18306800039844,0.842923450390509,0.723033089650446,0.661763836394364,0.653638332277218,0.474541238222193,1.07865046528132,1.37355025587742,0.38474715694639,0,0,0,0,0,0,0.590789906681404,0,0,0.171567810298526,0.109750285408626,0,0.201057944823262,0,0,0,0,0,0,0,0.462985512576611,0.761016608938393,0,0,0,0,0,0.93733833986777,0,0,0.268675568108545,0,0,0.492663237895943,0,1.65862492432618,0.144119953416961,2.14612136824846,0,0,0,0,0,0,0.285826432630578,0.112131084345361,0,0.1466765716419,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0.602878754119172,0,0,0,0,0,0,0,0,0,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D1}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=84316 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28212 | |||
|TSSclassifier=S | |||
|UniProt=Q9BRA0 | |||
|association_with_transcript=-17bp_to_ENST00000333775,NM_032356,uc002gja.2_5end | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_7_at_LSMD1_5end | |||
|id=chr17:7761189..7761200,- | |||
|ontology_enrichment_celltype=CL:0000860!4.91e-20!45;CL:0002057!3.80e-18!42;CL:0000766!2.48e-15!76;CL:0000738!2.83e-14!140;CL:0000839!7.15e-13!70;CL:0002031!1.37e-12!124;CL:0002087!8.42e-12!119;CL:0002194!1.06e-11!63;CL:0000576!1.06e-11!63;CL:0000040!1.06e-11!63;CL:0000559!1.06e-11!63;CL:0000557!1.38e-11!71;CL:0002032!3.54e-11!165;CL:0000837!3.54e-11!165;CL:0000988!5.58e-11!182;CL:0000037!5.86e-11!172;CL:0000566!5.86e-11!172;CL:0002009!7.97e-11!65;CL:0000763!9.11e-10!112;CL:0000049!9.11e-10!112 | |||
|ontology_enrichment_celltype_v019=CL:0000094;1.36e-16;8!CL:0000860;4.54e-13;33!CL:0002057;4.54e-13;33!CL:0000771;5.02e-12;2!CL:0000081;5.44e-12;11!CL:0000473;1.87e-09;39!CL:0000234;1.87e-09;39!CL:0000766;3.50e-09;69!CL:0000775;7.12e-08;3!CL:0000623;1.33e-07;3!CL:0000576;5.43e-07;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,2.34e-19,136;CL:0000766,1.52e-18,72;CL:0000094,9.87e-17,8;CL:0000037,1.33e-14,168;CL:0002032,4.28e-14,161;CL:0000837,4.28e-14,161;CL:0000988,1.41e-13,177;CL:0000860,3.96e-12,42;CL:0002057,3.96e-12,42;CL:0002031,4.11e-12,120;CL:0000081,4.31e-12,11;CL:0000771,5.07e-12,2;CL:0000763,4.23e-11,108;CL:0000049,4.23e-11,108;CL:0000473,2.36e-10,48;CL:0000234,2.36e-10,48;CL:0002087,5.85e-10,115;CL:0000839,6.77e-10,66;CL:0000557,1.03e-09,67;CL:0000775,4.99e-08,3;CL:0002194,7.10e-08,59;CL:0000576,7.10e-08,59;CL:0000040,7.10e-08,59;CL:0000559,7.10e-08,59;CL:0000623,1.09e-07,3;CL:0000825,1.09e-07,3;CL:0002009,1.48e-07,61 | |||
|ontology_enrichment_development_v019=CL:0002057;7.74e-09;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!7.01e-09!80;UBERON:0002193!8.30e-09!112;UBERON:0001474!9.21e-09!86;UBERON:0002390!2.47e-08!102;UBERON:0003061!2.47e-08!102;UBERON:0002405!7.43e-08!115;UBERON:0001737!4.93e-07!9 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.82e-08,76;UBERON:0001474,1.71e-07,82 | |||
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| |||
|short_description=p7@LSMD1 | |||
}} |
Revision as of 16:16, 11 September 2013
Short description: | p7@LSMD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_LSMD1_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | -17bp_to_ENST00000333775, NM_032356, uc002gja.2_5end |
EntrezGene: | LSMD1 |
HGNC: | 28212 |
UniProt: | Q9BRA0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 2.34e-19 | 136 |
myeloid leukocyte | 1.52e-18 | 72 |
granulocyte | 9.87e-17 | 8 |
hematopoietic stem cell | 1.33e-14 | 168 |
hematopoietic oligopotent progenitor cell | 4.28e-14 | 161 |
hematopoietic multipotent progenitor cell | 4.28e-14 | 161 |
hematopoietic cell | 1.41e-13 | 177 |
classical monocyte | 3.96e-12 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.96e-12 | 42 |
hematopoietic lineage restricted progenitor cell | 4.11e-12 | 120 |
blood cell | 4.31e-12 | 11 |
eosinophil | 5.07e-12 | 2 |
myeloid cell | 4.23e-11 | 108 |
common myeloid progenitor | 4.23e-11 | 108 |
defensive cell | 2.36e-10 | 48 |
phagocyte | 2.36e-10 | 48 |
nongranular leukocyte | 5.85e-10 | 115 |
myeloid lineage restricted progenitor cell | 6.77e-10 | 66 |
granulocyte monocyte progenitor cell | 1.03e-09 | 67 |
neutrophil | 4.99e-08 | 3 |
monopoietic cell | 7.10e-08 | 59 |
monocyte | 7.10e-08 | 59 |
monoblast | 7.10e-08 | 59 |
promonocyte | 7.10e-08 | 59 |
natural killer cell | 1.09e-07 | 3 |
pro-NK cell | 1.09e-07 | 3 |
macrophage dendritic cell progenitor | 1.48e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.82e-08 | 76 |
bone element | 1.71e-07 | 82 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.