FFCP PHASE1:Hg19::chr17:8007027..8007033,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr17:8007027..8007033,-|id=chr17:8007027..8007033,-|ontology_enrichment_celltype=CL:0000068!6.18e-18!3;CL:0000069!6.18e-18!3;CL:0000307!6.18e-18!3;CL:0000377!6.18e-18!3;CL:0000240!1.15e-14!6;CL:0000311!1.15e-14!6;CL:0000079!1.15e-14!6;CL:0000237!1.15e-14!6;CL:0000036!1.15e-14!6;CL:0000357!1.15e-14!6;CL:0000114!1.15e-14!6;CL:0000066!3.75e-11!254;CL:0002368!7.89e-11!13;CL:0002202!1.75e-10!9;CL:0002632!1.75e-10!9;CL:0000312!2.55e-10!5;CL:0002159!2.56e-10!13;CL:0002150!5.44e-08!3;CL:0000861!5.44e-08!3;CL:0002077!2.98e-07!33;CL:0002076!3.66e-07!43;CL:0002336!9.25e-07!1;CL:0002261!9.25e-07!1;CL:0002170!9.25e-07!1|ontology_enrichment_celltype_v019=CL:0002202;1.29e-18;9!CL:0002632;1.29e-18;9!CL:0002328;1.31e-14;3!CL:0000307;1.83e-14;3!CL:0002368;3.12e-13;13!CL:0002327;3.42e-11;4!CL:0000312;2.63e-09;5!CL:0000240;5.73e-08;6!CL:0000311;5.73e-08;6!CL:0000079;5.73e-08;6!CL:0000237;5.73e-08;6|ontology_enrichment_celltype_v019_2=CL:0002202,1.48e-18,9;CL:0002632,1.48e-18,9;CL:0002328,1.40e-14,3;CL:0000068,2.09e-14,3;CL:0000069,2.09e-14,3;CL:0000307,2.09e-14,3;CL:0000377,2.09e-14,3;CL:0002368,3.43e-13,13;CL:0002327,3.10e-11,4;CL:0000312,2.53e-09,5;CL:0000240,5.54e-08,6;CL:0000311,5.54e-08,6;CL:0000079,5.54e-08,6;CL:0000237,5.54e-08,6;CL:0000036,5.54e-08,6;CL:0000357,5.54e-08,6;CL:0000114,5.54e-08,6|ontology_enrichment_development_v019=CL:0000377;1.83e-14;3!CL:0000357;5.73e-08;6!CL:0000114;5.73e-08;6|ontology_enrichment_disease=DOID:3347!3.52e-07!1|ontology_enrichment_disease_v019=DOID:3347;2.21e-40;1!DOID:201;6.78e-08;6!DOID:0060100;6.78e-08;6|ontology_enrichment_disease_v019_2=DOID:3347,2.21e-40,1;DOID:201,6.78e-08,6;DOID:0060100,6.78e-08,6|ontology_enrichment_uberon=UBERON:0003126!5.59e-13!7;UBERON:0001005!5.59e-13!7;UBERON:0007196!6.90e-10!14;UBERON:0001558!6.90e-10!14|ontology_enrichment_uberon_v019=UBERON:0004815;1.31e-14;3!UBERON:0002031;1.31e-14;3!UBERON:0007196;1.31e-11;15!UBERON:0001558;1.31e-11;15!UBERON:0001911;3.42e-11;4!UBERON:0002185;2.63e-09;5!UBERON:0000485;5.22e-07;7!UBERON:0003126;6.04e-07;7!UBERON:0001005;6.04e-07;7|ontology_enrichment_uberon_v019_2=UBERON:0004815,1.40e-14,3;UBERON:0002031,1.40e-14,3;UBERON:0007196,1.42e-11,15;UBERON:0001558,1.42e-11,15;UBERON:0001911,3.10e-11,4;UBERON:0005333,3.10e-11,4;UBERON:0008425,3.10e-11,4;UBERON:0005311,3.10e-11,4;UBERON:0002185,2.74e-09,5;UBERON:0003126,6.39e-07,7;UBERON:0001005,6.39e-07,7|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.21852406100073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,2.24803506515239,0.100528972411631,0.277765335475589,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335964256397719,0,1.52249488594842,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.736647911487171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30347334256665,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.865999014529609,0.670302275535787,1.08890984861323,0,0,0,0.443430153536676,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0.167821586975843,0,0,0.210998064528027,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150323419414493,0,0.664653872707185,0,0.627865836814451,0,0,0,0,0,0,0,0,0.0967563312890851,0.292357268344742,0,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235265819698172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.699397538597222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3807198521202,0,0,0,0,0,0,0.147856086217045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118193840883968,0,0,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.71421575442263,0.352894871715692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217716747896961,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr17:8007027..8007033,-}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr17:8007027..8007033,- | |||
|id=chr17:8007027..8007033,- | |||
|ontology_enrichment_celltype=CL:0000068!6.18e-18!3;CL:0000069!6.18e-18!3;CL:0000307!6.18e-18!3;CL:0000377!6.18e-18!3;CL:0000240!1.15e-14!6;CL:0000311!1.15e-14!6;CL:0000079!1.15e-14!6;CL:0000237!1.15e-14!6;CL:0000036!1.15e-14!6;CL:0000357!1.15e-14!6;CL:0000114!1.15e-14!6;CL:0000066!3.75e-11!254;CL:0002368!7.89e-11!13;CL:0002202!1.75e-10!9;CL:0002632!1.75e-10!9;CL:0000312!2.55e-10!5;CL:0002159!2.56e-10!13;CL:0002150!5.44e-08!3;CL:0000861!5.44e-08!3;CL:0002077!2.98e-07!33;CL:0002076!3.66e-07!43;CL:0002336!9.25e-07!1;CL:0002261!9.25e-07!1;CL:0002170!9.25e-07!1 | |||
|ontology_enrichment_celltype_v019=CL:0002202;1.29e-18;9!CL:0002632;1.29e-18;9!CL:0002328;1.31e-14;3!CL:0000307;1.83e-14;3!CL:0002368;3.12e-13;13!CL:0002327;3.42e-11;4!CL:0000312;2.63e-09;5!CL:0000240;5.73e-08;6!CL:0000311;5.73e-08;6!CL:0000079;5.73e-08;6!CL:0000237;5.73e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002202,1.48e-18,9;CL:0002632,1.48e-18,9;CL:0002328,1.40e-14,3;CL:0000068,2.09e-14,3;CL:0000069,2.09e-14,3;CL:0000307,2.09e-14,3;CL:0000377,2.09e-14,3;CL:0002368,3.43e-13,13;CL:0002327,3.10e-11,4;CL:0000312,2.53e-09,5;CL:0000240,5.54e-08,6;CL:0000311,5.54e-08,6;CL:0000079,5.54e-08,6;CL:0000237,5.54e-08,6;CL:0000036,5.54e-08,6;CL:0000357,5.54e-08,6;CL:0000114,5.54e-08,6 | |||
|ontology_enrichment_development_v019=CL:0000377;1.83e-14;3!CL:0000357;5.73e-08;6!CL:0000114;5.73e-08;6 | |||
|ontology_enrichment_disease=DOID:3347!3.52e-07!1 | |||
|ontology_enrichment_disease_v019=DOID:3347;2.21e-40;1!DOID:201;6.78e-08;6!DOID:0060100;6.78e-08;6 | |||
|ontology_enrichment_disease_v019_2=DOID:3347,2.21e-40,1;DOID:201,6.78e-08,6;DOID:0060100,6.78e-08,6 | |||
|ontology_enrichment_uberon=UBERON:0003126!5.59e-13!7;UBERON:0001005!5.59e-13!7;UBERON:0007196!6.90e-10!14;UBERON:0001558!6.90e-10!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0004815;1.31e-14;3!UBERON:0002031;1.31e-14;3!UBERON:0007196;1.31e-11;15!UBERON:0001558;1.31e-11;15!UBERON:0001911;3.42e-11;4!UBERON:0002185;2.63e-09;5!UBERON:0000485;5.22e-07;7!UBERON:0003126;6.04e-07;7!UBERON:0001005;6.04e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,1.40e-14,3;UBERON:0002031,1.40e-14,3;UBERON:0007196,1.42e-11,15;UBERON:0001558,1.42e-11,15;UBERON:0001911,3.10e-11,4;UBERON:0005333,3.10e-11,4;UBERON:0008425,3.10e-11,4;UBERON:0005311,3.10e-11,4;UBERON:0002185,2.74e-09,5;UBERON:0003126,6.39e-07,7;UBERON:0001005,6.39e-07,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.21852406100073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,2.24803506515239,0.100528972411631,0.277765335475589,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335964256397719,0,1.52249488594842,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.736647911487171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30347334256665,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.865999014529609,0.670302275535787,1.08890984861323,0,0,0,0.443430153536676,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0.167821586975843,0,0,0.210998064528027,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150323419414493,0,0.664653872707185,0,0.627865836814451,0,0,0,0,0,0,0,0,0.0967563312890851,0.292357268344742,0,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235265819698172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.699397538597222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3807198521202,0,0,0,0,0,0,0.147856086217045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118193840883968,0,0,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.71421575442263,0.352894871715692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217716747896961,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr17:8007027..8007033,- | |||
}} |
Revision as of 16:33, 11 September 2013
Short description: | p@chr17:8007027..8007033, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr17:8007027..8007033, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of tracheobronchial tree | 1.48e-18 | 9 |
epithelial cell of lower respiratory tract | 1.48e-18 | 9 |
bronchial epithelial cell | 1.40e-14 | 3 |
duct epithelial cell | 2.09e-14 | 3 |
branched duct epithelial cell | 2.09e-14 | 3 |
tracheal epithelial cell | 2.09e-14 | 3 |
tracheoblast | 2.09e-14 | 3 |
respiratory epithelial cell | 3.43e-13 | 13 |
mammary gland epithelial cell | 3.10e-11 | 4 |
keratinocyte | 2.53e-09 | 5 |
stratified squamous epithelial cell | 5.54e-08 | 6 |
keratin accumulating cell | 5.54e-08 | 6 |
stratified epithelial cell | 5.54e-08 | 6 |
keratinizing barrier epithelial cell | 5.54e-08 | 6 |
epithelial fate stem cell | 5.54e-08 | 6 |
stratified epithelial stem cell | 5.54e-08 | 6 |
surface ectodermal cell | 5.54e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 1.40e-14 | 3 |
epithelium of bronchus | 1.40e-14 | 3 |
tracheobronchial tree | 1.42e-11 | 15 |
lower respiratory tract | 1.42e-11 | 15 |
mammary gland | 3.10e-11 | 4 |
mammary bud | 3.10e-11 | 4 |
mammary ridge | 3.10e-11 | 4 |
mammary placode | 3.10e-11 | 4 |
bronchus | 2.74e-09 | 5 |
trachea | 6.39e-07 | 7 |
respiratory airway | 6.39e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
osteosarcoma | 2.21e-40 | 1 |
connective tissue cancer | 6.78e-08 | 6 |
musculoskeletal system cancer | 6.78e-08 | 6 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.