FFCP PHASE1:Hg19::chr19:38878661..38878683,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=199720|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=18869|TSSclassifier=S|UniProt=Q86UU5|association_with_transcript=0bp_to_ENST00000334928,NM_152657,uc002oij.1,uc002oik.1,uc010efy.1_5end|coexpression_cluster_id=C1|description=CAGE_peak_2_at_GGN_5end|id=chr19:38878661..38878683,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0002575;1.72e-17;2!CL:0000313;1.30e-09;1!CL:0000669;3.29e-09;4!CL:0000062;6.06e-09;9|ontology_enrichment_celltype_v019_2=CL:0002575,1.34e-17,2;CL:0000313,1.62e-09,1;CL:0000669,2.91e-09,4;CL:0000062,2.55e-07,11;CL:0000375,2.55e-07,11;CL:0000335,2.55e-07,11|ontology_enrichment_development_v019=UBERON:0009117;2.74e-08;10!UBERON:0005564;2.74e-08;10!CL:0000335;2.11e-07;11|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:2152;1.30e-09;1|ontology_enrichment_disease_v019_2=DOID:2152,1.62e-09,1|ontology_enrichment_uberon=UBERON:0000119!9.68e-07!312|ontology_enrichment_uberon_v019=UBERON:0004911;1.30e-09;1!UBERON:0000964;3.29e-09;4!UBERON:0010409;3.29e-09;4!UBERON:0002108;1.55e-07;4|ontology_enrichment_uberon_v019_2=UBERON:0004911,1.62e-09,1;UBERON:0000964,4.06e-09,4;UBERON:0010409,4.06e-09,4;UBERON:0004348,4.06e-09,4;UBERON:0005427,4.06e-09,4;UBERON:0002108,1.61e-07,4|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0.655324116390517,0,0.37129905888014,0,0,0,0,0,0.123121058076788,0.612002073732759,0.313454721478088,0,0.547497700291537,0.251085279189606,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0.223915474239924,0,0,0,0,0,0.232429036905685,0,0,0,0,0,0,0,0,0,0,0,0.306083892370903,0.320929027076094,0,0,0,0,0,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0.336985893439485,0,0,0,0,0,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,0,0,0,0.393010762749165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,0,0.255725123687061,0.361439152384566,0,0.434539556882471,0.795285947051099,0,0.0945348171640679,0,0.263504357079378,6.48346423713678,1.45718115317017,0.370784442784429,0,0,0.26591592103773,0,0,0,0.198762407366705,0,0.347140501607594,0.56530794192401,0,0,0.417989933073621,0,0,0.33472061276467,0,0,0.24406205754817,0,0,0.0892997282840798,0,0.112611480483322,1.53316637465883,1.89853131913626,0.732806975721629,0,0,0,0.496971951695318,0.12663051166458,0.132409180813219,0.286836620748814,0,0,0,0.49333509683432,0.311211035399766,0.269421344139376,0.163461903113459,0.302714855289863,0,0.468642863667593,0.312160076830321,0,0.298897361103602,0.469737994575059,0.161872944368132,0.140450806702248,0.204154171254893,0.122834317311768,0.206651562351531,0,0.247266929278557,0.910161361938026,0,0.168336113954066,0.375355559615893,0.277064115484183,0,0,0.300476117813194,0.340296549480063,0.717558542755448,0.427114777637135,0.211931901159562,0.300091096084402,0.206105058476878,0,0.18611685633159,0.168776332241266,0.0974370051611986,0.504867548488229,0.0920498986422993,0,0,0.201504196455281,0,0,0,0,0.243947412259191,0,0.232387885739037,0.518305275076852,0,0,0,0,0,0.464367928031979,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0.8231480226628,0,0,0,0,0,0,0,0.109750285408626,0,0,0.740707561268237,0,1.03993478527958,0,0.34779121492523,0.587043471179108,0.433099343283221,0,0.190254152234598,0.790204397959275,0,0.246217006087397,0,0,0.93733833986777,0.16798212819886,0.283550194484773,0.179117045405697,0,0,0,0.176096868026452,0,0,0,0,0,1.17217447210047,0,0,0,0,0.448524337381443,0,0.51336800074665,0.129271715757778,7.15312891703765,0,0,0,0.257207374262142,0,0.799266537048298,0.428933980974443,0,0,0,0,0,0,0,0,0,0,0,0,1.14861935834114,0,0,0.205476322550383,0.179060963239896,0,0,0,0,0.508189248444927,0,0.773288812777695,0.167516265334349,0.637938751653163,0,0,0,0.736148950314839,0,0.271265023699736,0.207970861530807,0.178428988797162,0,0.234282829985426,0.300946099727719,2.27407504055985,1.03473071292505,1.32845119707087,0.368738337083406,0.347534457872331,1.17480694477644,1.71571711905428,0,0.215714200818617,0,0,0,0.30239029332968,0,0.153461973288062,0.561320188866147,0,0,0,0,0,0.177561725313127,0.0821271560138091,0.519254429183621,0.232420756919918,0,0,0.0920809889358963,0,0,0.131124414959424,0.451199612907412,0.308061348417659,0.784349769176855,0,0.422206515571503,0,0.170093705276516,0,0,0.270946437543853,0.501689773854853,0.764628819135115,0,0.223874754722178,0,0,0,1.64007322849853,0,0.206082023295445,0,0,0,0.650060246036521,0,0.096670718292122,0,0.15350367472613,0.137836572484531,0.107420244868274,0.290033387828457,0.0852266274161009,0.0890320356467374,0.330569830721956,0.576570202095319,0.638063562472921,0.2023155617111,0,0.31481234683064,0.6970372701606,0,0,0,0.37064843820784,0,0,0,0.190630193923825,0.767693373934002,0,0.636406495851874,0,0.359744915166629,0,0.117812402345686,0,0,0.421258456238981,0,0.243713489631284,0,0,0.424216295861138,0,0,0.66343897524122,0.438450885253763,0,1.31178950409327,0.405820753925408,0,0,0,0.491245205065606,0.35667105148125,0.354761064070598,0.422215270595328,0.3292948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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=199720 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18869 | |||
|TSSclassifier=S | |||
|UniProt=Q86UU5 | |||
|association_with_transcript=0bp_to_ENST00000334928,NM_152657,uc002oij.1,uc002oik.1,uc010efy.1_5end | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_2_at_GGN_5end | |||
|id=chr19:38878661..38878683,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002575;1.72e-17;2!CL:0000313;1.30e-09;1!CL:0000669;3.29e-09;4!CL:0000062;6.06e-09;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002575,1.34e-17,2;CL:0000313,1.62e-09,1;CL:0000669,2.91e-09,4;CL:0000062,2.55e-07,11;CL:0000375,2.55e-07,11;CL:0000335,2.55e-07,11 | |||
|ontology_enrichment_development_v019=UBERON:0009117;2.74e-08;10!UBERON:0005564;2.74e-08;10!CL:0000335;2.11e-07;11 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2152;1.30e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:2152,1.62e-09,1 | |||
|ontology_enrichment_uberon=UBERON:0000119!9.68e-07!312 | |||
|ontology_enrichment_uberon_v019=UBERON:0004911;1.30e-09;1!UBERON:0000964;3.29e-09;4!UBERON:0010409;3.29e-09;4!UBERON:0002108;1.55e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004911,1.62e-09,1;UBERON:0000964,4.06e-09,4;UBERON:0010409,4.06e-09,4;UBERON:0004348,4.06e-09,4;UBERON:0005427,4.06e-09,4;UBERON:0002108,1.61e-07,4 | |||
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| |||
|short_description=p2@GGN | |||
}} |
Revision as of 20:27, 11 September 2013
Short description: | p2@GGN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_GGN_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 0bp_to_ENST00000334928, NM_152657, uc002oij.1, uc002oik.1, uc010efy.1_5end |
EntrezGene: | GGN |
HGNC: | 18869 |
UniProt: | Q86UU5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
central nervous system pericyte | 1.34e-17 | 2 |
serous secreting cell | 1.62e-09 | 1 |
pericyte cell | 2.91e-09 | 4 |
osteoblast | 2.55e-07 | 11 |
osteoprogenitor cell | 2.55e-07 | 11 |
mesenchyme condensation cell | 2.55e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
epithelium of female gonad | 1.62e-09 | 1 |
cornea | 4.06e-09 | 4 |
eye surface | 4.06e-09 | 4 |
optic eminence | 4.06e-09 | 4 |
corneal primordium | 4.06e-09 | 4 |
small intestine | 1.61e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
ovary epithelial cancer | 1.62e-09 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.