FFCP PHASE1:Hg19::chr1:203150369..203150408,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C283|description=CAGE_peak_at_chr1:203150369..203150408,-|id=chr1:203150369..203150408,-|ontology_enrichment_celltype=CL:0000153!4.66e-16!9;CL:0000447!4.66e-16!9;CL:0000667!7.08e-13!6;CL:0000058!7.08e-13!6;CL:0000138!7.08e-13!6;CL:0000327!7.11e-10!14;CL:0000499!1.53e-07!27;CL:0000235!2.34e-07!10|ontology_enrichment_celltype_v019=CL:0000153;8.01e-47;9!CL:0000447;8.01e-47;9!CL:0000138;1.77e-36;6!CL:0000327;7.41e-28;15!CL:0000499;4.48e-24;28!CL:0000235;1.28e-23;6!CL:0000135;8.58e-13;3!CL:0000388;8.58e-13;3!CL:0000214;1.41e-12;3!CL:0000151;3.60e-09;36!CL:0000182;3.45e-07;12!CL:0002540;9.55e-07;6|ontology_enrichment_celltype_v019_2=CL:0000153,6.99e-47,9;CL:0000447,6.99e-47,9;CL:0000058,1.64e-36,6;CL:0000138,1.64e-36,6;CL:0000327,6.84e-28,15;CL:0000499,4.18e-24,28;CL:0000235,1.39e-23,6;CL:0000135,8.34e-13,3;CL:0000388,8.34e-13,3;CL:0000214,1.33e-12,3;CL:0000151,3.29e-11,36;CL:0000182,3.53e-07,12;CL:0002540,9.42e-07,6|ontology_enrichment_development_v019=UBERON:0010115;9.40e-10;1!UBERON:0004161;9.68e-08;11|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:5662;2.59e-10;1|ontology_enrichment_disease_v019_2=DOID:5662,2.84e-10,1|ontology_enrichment_uberon=UBERON:0002308!3.37e-07!9;UBERON:0000125!3.37e-07!9|ontology_enrichment_uberon_v019=UBERON:0007846;8.58e-13;3!UBERON:0000043;8.58e-13;3!UBERON:0007845;8.58e-13;3!UBERON:0006915;1.41e-12;3!UBERON:0007616;1.41e-12;3!UBERON:0002217;1.41e-12;3!UBERON:0002018;1.41e-12;3!UBERON:0001282;3.55e-10;1!UBERON:0009842;3.55e-10;1!UBERON:0003704;3.55e-10;1!UBERON:0001171;3.55e-10;1!UBERON:0001172;3.55e-10;1!UBERON:0002363;9.40e-10;1!UBERON:0002107;1.34e-07;19!UBERON:0006925;1.34e-07;19|ontology_enrichment_uberon_v019_2=UBERON:0007846,8.34e-13,3;UBERON:0000043,8.34e-13,3;UBERON:0007845,8.34e-13,3;UBERON:0006915,1.33e-12,3;UBERON:0007616,1.33e-12,3;UBERON:0002217,1.33e-12,3;UBERON:0002018,1.33e-12,3;UBERON:0001282,4.06e-10,1;UBERON:0009842,4.06e-10,1;UBERON:0003704,4.06e-10,1;UBERON:0001171,4.06e-10,1;UBERON:0001172,4.06e-10,1;UBERON:0002363,7.55e-10,1;UBERON:0007645,7.55e-10,1;UBERON:0007647,7.55e-10,1;UBERON:0010115,7.55e-10,1;UBERON:0002107,1.40e-07,19;UBERON:0006925,1.40e-07,19;UBERON:0008836,1.40e-07,19|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236482229888585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521482918420201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.1686349143074,7.01873074890245,3.91085601194224,5.5670016293577,6.8128881842369,0,0,0,0,0,0,0,0,0.26591592103773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.311211035399766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.89696330006576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492434012174795,9.12616634043027,4.45893486866185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258543431515556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2162378064119,0,6.32501818449095,0,0,0,0,0.205476322550383,0.179060963239896,0,0,0,0,0,1.30139853857622,0,0,0,0.749007023947182,0,0,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0,0,0,0,0,0,0,0,0.248107807818777,0,0,0,0,0.160853921143607,0,0,0,0.0821271560138091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.096670718292122,0.154048617114644,0.307007349452259,0,0,0.290033387828457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.6196469961995,0,0,0,0,0,5.48879851773927,2.63435914367922,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343505344755765,0.921722292925374,0.671028323677248,0.667396566847634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0,5.01345045726805,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.64285107034069,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235694034616795,0,0,0,0.288950589901519,0,0.410716136675979,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0.864221491201268,0.326587360109409,0,0,0,0,2.05173127149315,0,0,0.39669780522807,0,0,0.213574825135389,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0.221858103073705,0,0,0,0,0,0,0,0,0,0,0,1.32582103692562,10.5658518736082,0,0,0,0,0,0,0,0,0,0,0,0.300515217994437,0,0,0,0,0,0,0,0,0.336749488765919,0,0,0,0,0,0,0,0,0,0.877136198314828,0,0,0.168942440653073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.00208033030965,0.135939465953663,0.0657727735628491,0,0,0.0784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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C283 | |||
|description=CAGE_peak_at_chr1:203150369..203150408,- | |||
|id=chr1:203150369..203150408,- | |||
|ontology_enrichment_celltype=CL:0000153!4.66e-16!9;CL:0000447!4.66e-16!9;CL:0000667!7.08e-13!6;CL:0000058!7.08e-13!6;CL:0000138!7.08e-13!6;CL:0000327!7.11e-10!14;CL:0000499!1.53e-07!27;CL:0000235!2.34e-07!10 | |||
|ontology_enrichment_celltype_v019=CL:0000153;8.01e-47;9!CL:0000447;8.01e-47;9!CL:0000138;1.77e-36;6!CL:0000327;7.41e-28;15!CL:0000499;4.48e-24;28!CL:0000235;1.28e-23;6!CL:0000135;8.58e-13;3!CL:0000388;8.58e-13;3!CL:0000214;1.41e-12;3!CL:0000151;3.60e-09;36!CL:0000182;3.45e-07;12!CL:0002540;9.55e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000153,6.99e-47,9;CL:0000447,6.99e-47,9;CL:0000058,1.64e-36,6;CL:0000138,1.64e-36,6;CL:0000327,6.84e-28,15;CL:0000499,4.18e-24,28;CL:0000235,1.39e-23,6;CL:0000135,8.34e-13,3;CL:0000388,8.34e-13,3;CL:0000214,1.33e-12,3;CL:0000151,3.29e-11,36;CL:0000182,3.53e-07,12;CL:0002540,9.42e-07,6 | |||
|ontology_enrichment_development_v019=UBERON:0010115;9.40e-10;1!UBERON:0004161;9.68e-08;11 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:5662;2.59e-10;1 | |||
|ontology_enrichment_disease_v019_2=DOID:5662,2.84e-10,1 | |||
|ontology_enrichment_uberon=UBERON:0002308!3.37e-07!9;UBERON:0000125!3.37e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0007846;8.58e-13;3!UBERON:0000043;8.58e-13;3!UBERON:0007845;8.58e-13;3!UBERON:0006915;1.41e-12;3!UBERON:0007616;1.41e-12;3!UBERON:0002217;1.41e-12;3!UBERON:0002018;1.41e-12;3!UBERON:0001282;3.55e-10;1!UBERON:0009842;3.55e-10;1!UBERON:0003704;3.55e-10;1!UBERON:0001171;3.55e-10;1!UBERON:0001172;3.55e-10;1!UBERON:0002363;9.40e-10;1!UBERON:0002107;1.34e-07;19!UBERON:0006925;1.34e-07;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007846,8.34e-13,3;UBERON:0000043,8.34e-13,3;UBERON:0007845,8.34e-13,3;UBERON:0006915,1.33e-12,3;UBERON:0007616,1.33e-12,3;UBERON:0002217,1.33e-12,3;UBERON:0002018,1.33e-12,3;UBERON:0001282,4.06e-10,1;UBERON:0009842,4.06e-10,1;UBERON:0003704,4.06e-10,1;UBERON:0001171,4.06e-10,1;UBERON:0001172,4.06e-10,1;UBERON:0002363,7.55e-10,1;UBERON:0007645,7.55e-10,1;UBERON:0007647,7.55e-10,1;UBERON:0010115,7.55e-10,1;UBERON:0002107,1.40e-07,19;UBERON:0006925,1.40e-07,19;UBERON:0008836,1.40e-07,19 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236482229888585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521482918420201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.1686349143074,7.01873074890245,3.91085601194224,5.5670016293577,6.8128881842369,0,0,0,0,0,0,0,0,0.26591592103773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.311211035399766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.89696330006576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492434012174795,9.12616634043027,4.45893486866185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258543431515556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2162378064119,0,6.32501818449095,0,0,0,0,0.205476322550383,0.179060963239896,0,0,0,0,0,1.30139853857622,0,0,0,0.749007023947182,0,0,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0,0,0,0,0,0,0,0,0.248107807818777,0,0,0,0,0.160853921143607,0,0,0,0.0821271560138091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.096670718292122,0.154048617114644,0.307007349452259,0,0,0.290033387828457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.6196469961995,0,0,0,0,0,5.48879851773927,2.63435914367922,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343505344755765,0.921722292925374,0.671028323677248,0.667396566847634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0,5.01345045726805,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.64285107034069,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235694034616795,0,0,0,0.288950589901519,0,0.410716136675979,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0.864221491201268,0.326587360109409,0,0,0,0,2.05173127149315,0,0,0.39669780522807,0,0,0.213574825135389,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0.221858103073705,0,0,0,0,0,0,0,0,0,0,0,1.32582103692562,10.5658518736082,0,0,0,0,0,0,0,0,0,0,0,0.300515217994437,0,0,0,0,0,0,0,0,0.336749488765919,0,0,0,0,0,0,0,0,0,0.877136198314828,0,0,0.168942440653073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.00208033030965,0.135939465953663,0.0657727735628491,0,0,0.078493092850514,0.157115589916002,0,0,0,0,0,0,0,0,1.60342272946051,0.62164849248911,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307988420568741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286679166302903,0,0.0679914901909147,0,0,2.23197010900051,24.0331326888337,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143444410785353,0,0,0.106727345877715,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr1:203150369..203150408,- | |||
}} |
Revision as of 02:53, 12 September 2013
Short description: | p@chr1:203150369..203150408, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr1:203150369..203150408, - |
Coexpression cluster: | C283_tenocyte_Chondrocyte_mesenchymal_Macrophage_pleomorphic_Synoviocyte_cholangiocellular |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
GAG secreting cell | 6.99e-47 | 9 |
carbohydrate secreting cell | 6.99e-47 | 9 |
chondroblast | 1.64e-36 | 6 |
chondrocyte | 1.64e-36 | 6 |
extracellular matrix secreting cell | 6.84e-28 | 15 |
stromal cell | 4.18e-24 | 28 |
macrophage | 1.39e-23 | 6 |
fibrocyte | 8.34e-13 | 3 |
tendon cell | 8.34e-13 | 3 |
synovial cell | 1.33e-12 | 3 |
secretory cell | 3.29e-11 | 36 |
hepatocyte | 3.53e-07 | 12 |
mesenchymal stem cell of the bone marrow | 9.42e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
dense regular connective tissue | 8.34e-13 | 3 |
tendon | 8.34e-13 | 3 |
regular connective tissue | 8.34e-13 | 3 |
stratified squamous epithelium | 1.33e-12 | 3 |
layer of synovial tissue | 1.33e-12 | 3 |
synovial joint | 1.33e-12 | 3 |
synovial membrane of synovial joint | 1.33e-12 | 3 |
intralobular bile duct | 4.06e-10 | 1 |
acinus | 4.06e-10 | 1 |
intrahepatic bile duct | 4.06e-10 | 1 |
portal lobule | 4.06e-10 | 1 |
hepatic acinus | 4.06e-10 | 1 |
dura mater | 7.55e-10 | 1 |
future meninx | 7.55e-10 | 1 |
ectomeninx | 7.55e-10 | 1 |
future dura mater | 7.55e-10 | 1 |
liver | 1.40e-07 | 19 |
digestive gland | 1.40e-07 | 19 |
liver bud | 1.40e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
pleomorphic carcinoma | 2.84e-10 | 1 |
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