FFCP PHASE1:Hg19::chr1:208084527..208084543,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=947|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=1662|TSSclassifier=S|UniProt=B4DUX4|association_with_transcript=0bp_to_ENST00000367037_5end|coexpression_cluster_id=C1470|description=CAGE_peak_5_at_CD34_5end|id=chr1:208084527..208084543,-|ontology_enrichment_celltype=CL:0002139!1.31e-16!24;CL:0000115!3.75e-14!35;CL:0002078!2.51e-11!44;CL:0000071!2.67e-11!18;CL:0002546!2.67e-11!18;CL:1000413!7.82e-08!9;CL:0005020!4.23e-07!6;CL:0002138!4.23e-07!6;CL:0005022!4.23e-07!6;CL:0000213!6.58e-07!57;CL:0000215!6.58e-07!57|ontology_enrichment_celltype_v019=CL:0002139;2.74e-17;24!CL:0000115;5.16e-14;36!CL:0000071;5.29e-10;18!CL:0002138;5.82e-10;6!CL:0002078;3.24e-08;45!CL:1000413;3.34e-07;9|ontology_enrichment_celltype_v019_2=CL:0002139,3.41e-17,24;CL:0000115,1.08e-15,36;CL:0002078,2.43e-11,45;CL:0000071,5.76e-10,18;CL:0002546,5.76e-10,18;CL:0005020,6.94e-10,6;CL:0002138,6.94e-10,6;CL:0005022,6.94e-10,6;CL:0000213,1.51e-07,58;CL:0000215,1.51e-07,58;CL:1000413,3.56e-07,9|ontology_enrichment_development_v019=CL:0002546;5.29e-10;18!CL:0005022;5.82e-10;6!UBERON:0006603;2.30e-07;65|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!1.53e-37!115;UBERON:0004111!5.76e-17!241;UBERON:0000477!2.02e-15!286;UBERON:0000025!3.48e-15!194;UBERON:0001049!4.01e-13!57;UBERON:0005068!4.01e-13!57;UBERON:0006241!4.01e-13!57;UBERON:0007135!4.01e-13!57;UBERON:0003075!2.28e-12!86;UBERON:0007284!2.28e-12!86;UBERON:0001986!2.67e-11!18;UBERON:0004638!2.67e-11!18;UBERON:0004852!2.67e-11!18;UBERON:0002346!3.12e-11!90;UBERON:0003080!5.08e-11!42;UBERON:0002616!1.15e-10!59;UBERON:0002780!1.62e-10!41;UBERON:0001890!1.62e-10!41;UBERON:0006240!1.62e-10!41;UBERON:0000055!4.22e-10!69;UBERON:0004872!2.72e-09!84;UBERON:0001893!4.13e-09!34;UBERON:0001869!4.64e-09!32;UBERON:0002020!5.56e-09!34;UBERON:0003528!5.56e-09!34;UBERON:0006914!8.71e-09!25;UBERON:0000956!1.07e-08!25;UBERON:0000203!1.07e-08!25;UBERON:0002791!1.27e-08!33;UBERON:0000483!1.34e-08!309;UBERON:0000119!1.37e-08!312;UBERON:0005743!1.49e-08!86;UBERON:0000487!2.21e-08!22;UBERON:0001017!2.81e-08!82;UBERON:0000955!3.52e-08!69;UBERON:0006238!3.52e-08!69;UBERON:0002049!4.90e-08!79;UBERON:0007798!4.90e-08!79;UBERON:0001009!7.15e-08!113;UBERON:0003915!7.82e-08!9;UBERON:0004700!7.82e-08!9;UBERON:0001917!7.82e-08!9;UBERON:0001981!1.25e-07!60;UBERON:0007500!1.25e-07!60;UBERON:0004537!1.25e-07!60;UBERON:0006965!1.25e-07!60;UBERON:0003056!1.80e-07!61;UBERON:0000073!2.84e-07!94;UBERON:0001016!2.84e-07!94|ontology_enrichment_uberon_v019=UBERON:0004638;5.29e-10;18!UBERON:0001986;5.29e-10;18!UBERON:0004852;5.29e-10;18!UBERON:0000487;1.10e-07;22!UBERON:0002465;2.62e-07;10!UBERON:0001473;3.04e-07;8!UBERON:0004536;3.04e-07;8!UBERON:0006558;3.04e-07;8!UBERON:0003915;3.34e-07;9!UBERON:0004700;3.34e-07;9!UBERON:0001917;3.34e-07;9|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.21e-16,114;UBERON:0004638,5.76e-10,18;UBERON:0001986,5.76e-10,18;UBERON:0004852,5.76e-10,18;UBERON:0000055,3.15e-08,68;UBERON:0000487,1.18e-07,22;UBERON:0002465,2.60e-07,10;UBERON:0001473,3.45e-07,8;UBERON:0004536,3.45e-07,8;UBERON:0006558,3.45e-07,8;UBERON:0003915,3.56e-07,9;UBERON:0004700,3.56e-07,9;UBERON:0001917,3.56e-07,9;UBERON:0003103,5.08e-07,68|phase1_expression=0.54503513781167,0,3.38290569830331,1.0007329835313,0.446961094427288,6.97870819280295,0,0,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0,0.204000691244253,0,1.43117993565528,4.37998160233229,2.88748071068046,0,0,0,0.393364276848904,0,0,0,0,0,0,0,10.5696158160545,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.60856642895129,1.68152568894461,4.21414535640123,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.767175371061182,0,0,0,0,0,0.0945348171640679,0,0,2.81605012320082,0,0,0,0,0,0,0,0,3.57772333260069,1.72046919021225,1.04142150482278,0.56530794192401,1.25849830862972,1.6507082516404,1.46296476575767,2.32575083252396,1.42306505074684,6.02497102976406,12.4877088303836,2.28081631715554,9.03029612928227,0.367663080345869,4.0507097394088,3.48268940307911,0.898117490504679,1.57656072676651,0,0,0.183201743930407,0,0,0,0,0.633152558322899,0,0.286836620748814,0.354668382198357,0,0,0,0.622422070799533,0.269421344139376,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340296549480063,0,0,0,0,0,0,0,0,0,0,0,0.161646056818812,0,0,0,0,0,0,0,0.132529768321485,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738155454624648,0,0,1.47008711385542,0,1.96565443335525,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,10.5387506865584,7.40776820122577,2.66355813128438,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343143423810856,0,0,0,0,0,0,0,0,0,0,0.511707249066704,0,2.9683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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=947 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1662 | |||
|TSSclassifier=S | |||
|UniProt=B4DUX4 | |||
|association_with_transcript=0bp_to_ENST00000367037_5end | |||
|coexpression_cluster_id=C1470 | |||
|description=CAGE_peak_5_at_CD34_5end | |||
|id=chr1:208084527..208084543,- | |||
|ontology_enrichment_celltype=CL:0002139!1.31e-16!24;CL:0000115!3.75e-14!35;CL:0002078!2.51e-11!44;CL:0000071!2.67e-11!18;CL:0002546!2.67e-11!18;CL:1000413!7.82e-08!9;CL:0005020!4.23e-07!6;CL:0002138!4.23e-07!6;CL:0005022!4.23e-07!6;CL:0000213!6.58e-07!57;CL:0000215!6.58e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:0002139;2.74e-17;24!CL:0000115;5.16e-14;36!CL:0000071;5.29e-10;18!CL:0002138;5.82e-10;6!CL:0002078;3.24e-08;45!CL:1000413;3.34e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,3.41e-17,24;CL:0000115,1.08e-15,36;CL:0002078,2.43e-11,45;CL:0000071,5.76e-10,18;CL:0002546,5.76e-10,18;CL:0005020,6.94e-10,6;CL:0002138,6.94e-10,6;CL:0005022,6.94e-10,6;CL:0000213,1.51e-07,58;CL:0000215,1.51e-07,58;CL:1000413,3.56e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002546;5.29e-10;18!CL:0005022;5.82e-10;6!UBERON:0006603;2.30e-07;65 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.53e-37!115;UBERON:0004111!5.76e-17!241;UBERON:0000477!2.02e-15!286;UBERON:0000025!3.48e-15!194;UBERON:0001049!4.01e-13!57;UBERON:0005068!4.01e-13!57;UBERON:0006241!4.01e-13!57;UBERON:0007135!4.01e-13!57;UBERON:0003075!2.28e-12!86;UBERON:0007284!2.28e-12!86;UBERON:0001986!2.67e-11!18;UBERON:0004638!2.67e-11!18;UBERON:0004852!2.67e-11!18;UBERON:0002346!3.12e-11!90;UBERON:0003080!5.08e-11!42;UBERON:0002616!1.15e-10!59;UBERON:0002780!1.62e-10!41;UBERON:0001890!1.62e-10!41;UBERON:0006240!1.62e-10!41;UBERON:0000055!4.22e-10!69;UBERON:0004872!2.72e-09!84;UBERON:0001893!4.13e-09!34;UBERON:0001869!4.64e-09!32;UBERON:0002020!5.56e-09!34;UBERON:0003528!5.56e-09!34;UBERON:0006914!8.71e-09!25;UBERON:0000956!1.07e-08!25;UBERON:0000203!1.07e-08!25;UBERON:0002791!1.27e-08!33;UBERON:0000483!1.34e-08!309;UBERON:0000119!1.37e-08!312;UBERON:0005743!1.49e-08!86;UBERON:0000487!2.21e-08!22;UBERON:0001017!2.81e-08!82;UBERON:0000955!3.52e-08!69;UBERON:0006238!3.52e-08!69;UBERON:0002049!4.90e-08!79;UBERON:0007798!4.90e-08!79;UBERON:0001009!7.15e-08!113;UBERON:0003915!7.82e-08!9;UBERON:0004700!7.82e-08!9;UBERON:0001917!7.82e-08!9;UBERON:0001981!1.25e-07!60;UBERON:0007500!1.25e-07!60;UBERON:0004537!1.25e-07!60;UBERON:0006965!1.25e-07!60;UBERON:0003056!1.80e-07!61;UBERON:0000073!2.84e-07!94;UBERON:0001016!2.84e-07!94 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;5.29e-10;18!UBERON:0001986;5.29e-10;18!UBERON:0004852;5.29e-10;18!UBERON:0000487;1.10e-07;22!UBERON:0002465;2.62e-07;10!UBERON:0001473;3.04e-07;8!UBERON:0004536;3.04e-07;8!UBERON:0006558;3.04e-07;8!UBERON:0003915;3.34e-07;9!UBERON:0004700;3.34e-07;9!UBERON:0001917;3.34e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.21e-16,114;UBERON:0004638,5.76e-10,18;UBERON:0001986,5.76e-10,18;UBERON:0004852,5.76e-10,18;UBERON:0000055,3.15e-08,68;UBERON:0000487,1.18e-07,22;UBERON:0002465,2.60e-07,10;UBERON:0001473,3.45e-07,8;UBERON:0004536,3.45e-07,8;UBERON:0006558,3.45e-07,8;UBERON:0003915,3.56e-07,9;UBERON:0004700,3.56e-07,9;UBERON:0001917,3.56e-07,9;UBERON:0003103,5.08e-07,68 | |||
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| |||
|short_description=p5@CD34 | |||
}} |
Revision as of 03:17, 12 September 2013
Short description: | p5@CD34 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_CD34_5end |
Coexpression cluster: | C1470_acute_Renal_clear_Endothelial_diaphragm_skeletal_Lymphatic |
Association with transcript: | 0bp_to_ENST00000367037_5end |
EntrezGene: | CD34 |
HGNC: | 1662 |
UniProt: | B4DUX4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 3.41e-17 | 24 |
endothelial cell | 1.08e-15 | 36 |
meso-epithelial cell | 2.43e-11 | 45 |
blood vessel endothelial cell | 5.76e-10 | 18 |
embryonic blood vessel endothelial progenitor cell | 5.76e-10 | 18 |
lymphangioblast | 6.94e-10 | 6 |
endothelial cell of lymphatic vessel | 6.94e-10 | 6 |
vascular lymphangioblast | 6.94e-10 | 6 |
lining cell | 1.51e-07 | 58 |
barrier cell | 1.51e-07 | 58 |
endothelial cell of artery | 3.56e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.21e-16 | 114 |
blood vessel endothelium | 5.76e-10 | 18 |
endothelium | 5.76e-10 | 18 |
cardiovascular system endothelium | 5.76e-10 | 18 |
vessel | 3.15e-08 | 68 |
simple squamous epithelium | 1.18e-07 | 22 |
lymphoid system | 2.60e-07 | 10 |
lymphatic vessel | 3.45e-07 | 8 |
lymph vasculature | 3.45e-07 | 8 |
lymphatic part of lymphoid system | 3.45e-07 | 8 |
endothelial tube | 3.56e-07 | 9 |
arterial system endothelium | 3.56e-07 | 9 |
endothelium of artery | 3.56e-07 | 9 |
compound organ | 5.08e-07 | 68 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.