FFCP PHASE1:Hg19::chr1:55505132..55505142,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=255738|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=20001|TSSclassifier=S|UniProt=Q8NBP7|association_with_transcript=-6bp_to_NM_174936_5end|coexpression_cluster_id=C130|description=CAGE_peak_3_at_PCSK9_5end|id=chr1:55505132..55505142,+|ontology_enrichment_celltype=CL:0000066!8.67e-20!254;CL:0000223!8.94e-10!59;CL:0002076!3.65e-09!43;CL:0002322!4.55e-09!5;CL:0002321!1.30e-07!248;CL:0000220!8.73e-07!246|ontology_enrichment_celltype_v019=CL:0002322;5.45e-35;5!CL:0000540;1.35e-11;6!CL:0000404;1.35e-11;6!CL:0002321;1.41e-11;15!CL:0002336;3.96e-08;1!CL:0002261;3.96e-08;1!CL:0002170;3.96e-08;1!CL:0000148;6.50e-07;10|ontology_enrichment_celltype_v019_2=CL:0002322,2.53e-35,5;CL:0000540,1.36e-11,6;CL:0000031,1.36e-11,6;CL:0000404,1.36e-11,6;CL:0000047,8.26e-09,8;CL:0002336,4.11e-08,1;CL:0002261,4.11e-08,1;CL:0002170,4.11e-08,1;CL:0000148,5.94e-07,10;CL:0000541,5.94e-07,10;CL:1000507,9.25e-07,10;CL:1000494,9.25e-07,10|ontology_enrichment_development_v019=CL:0000031;1.35e-11;6|ontology_enrichment_disease=DOID:305!3.55e-09!106|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001737!4.16e-12!9;UBERON:0004119!1.16e-11!169;UBERON:0000925!1.16e-11!169;UBERON:0006595!1.16e-11!169;UBERON:0001007!1.05e-08!155;UBERON:0001555!1.05e-08!155;UBERON:0007026!1.05e-08!155;UBERON:0000063!2.61e-08!97;UBERON:0004921!3.72e-08!129;UBERON:0004185!3.72e-08!129;UBERON:0000064!5.43e-08!219;UBERON:0000077!1.57e-07!130;UBERON:0000481!3.00e-07!347|ontology_enrichment_uberon_v019=UBERON:0003891;1.01e-07;4!UBERON:0001737;1.91e-07;9!UBERON:0001557;1.91e-07;9|ontology_enrichment_uberon_v019_2=UBERON:0003891,1.12e-07,4;UBERON:0001737,2.05e-07,9;UBERON:0004810,9.25e-07,10|phase1_expression=0.363356758541113,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0,0,0,0,0,0,0,0.246242116153576,0,0.313454721478088,0,0,0.125542639594803,0,0,0,0,0,0,0.919421224478927,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0,0,0,0.0945348171640679,0.443458794925128,0.087834785693126,0.0654895377488563,0.364295288292542,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872188104285069,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234321431833797,0,0,0,0.23486899728753,0.323745888736263,0,0,0,0,0,0,0.910161361938026,0.718618141816238,0,0.125118519871964,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,1.09098448236334,0.573609190778008,1.82960559194393,2.38553582978673,3.48581828608555,1.65857688024593,3.28017106138317,2.55484151353081,0,0,0,0,0,0.473227200159376,0.168584690078102,0.482022059766964,1.32352767278873,1.08939722046203,0.474541238222193,0.404493924480493,0.196221465125346,2.69323009862473,0,0,0,0,0,0,0,0,0.245976877086227,0,0.329250856225877,0,0.402115889646523,1.29623823221941,0,1.03993478527958,0,0,0,0,0,0,0,0,0,0,0,0,0.335964256397719,0.992425680696705,0,0.290633938513962,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195801157462741,0.343143423810856,0,0,0,0,1.66435439510497,0,0.496215615637554,1.38115775959256,0,0.256278298511402,0,0,0,0,0,0,0,0,0.362578348774867,0,0.460404944679482,0,0,0,1.35359883872224,0.0770153371044148,0,0,0.105551628892876,0,0,0.215915916102139,0,0.270946437543853,1.50506932156456,0.509752546090077,1.66215201785745,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0.154048617114644,0.15350367472613,0,0,0.435050081742686,0.170453254832202,0.979352392114111,0.165284915360978,0.192190067365106,1.02090169995667,0.10115778085555,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0,0,0,0,0,0.274537029736055,0.471249609382746,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0982490410131212,0,0,0.211107635297664,0,0.379473173765715,0.699869440489966,0.384888450902048,0,1.08890984861323,0.376575203107117,1.29151611801369,0,0.886860307073351,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221158519862449,0.886642856860642,0,0.871507708151921,0.139423744278603,0,0,0,0,0.108647371922008,0,0,0,0,0,0,0,0,0.167821586975843,0.569261198172555,0,0.210998064528027,0,0.565412285735763,0,0,0,0.611030144933625,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0.685946781900644,0.435296032902013,0.17472666824203,0.171986032471617,0.483781656445426,0.292357268344742,0.492692742319255,0.290967049465258,0,0.225980740780532,0,0,0.0633107959558787,0.195551382734803,0,0,0.39961921916426,0.864542502924636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.16495949527454,0.393915911536118,0.247247575143499,0.13480708770837,0,0,0,0,6.91238538399582,5.91419577368105,8.72424709861289,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=255738 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20001 | |||
|TSSclassifier=S | |||
|UniProt=Q8NBP7 | |||
|association_with_transcript=-6bp_to_NM_174936_5end | |||
|coexpression_cluster_id=C130 | |||
|description=CAGE_peak_3_at_PCSK9_5end | |||
|id=chr1:55505132..55505142,+ | |||
|ontology_enrichment_celltype=CL:0000066!8.67e-20!254;CL:0000223!8.94e-10!59;CL:0002076!3.65e-09!43;CL:0002322!4.55e-09!5;CL:0002321!1.30e-07!248;CL:0000220!8.73e-07!246 | |||
|ontology_enrichment_celltype_v019=CL:0002322;5.45e-35;5!CL:0000540;1.35e-11;6!CL:0000404;1.35e-11;6!CL:0002321;1.41e-11;15!CL:0002336;3.96e-08;1!CL:0002261;3.96e-08;1!CL:0002170;3.96e-08;1!CL:0000148;6.50e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,2.53e-35,5;CL:0000540,1.36e-11,6;CL:0000031,1.36e-11,6;CL:0000404,1.36e-11,6;CL:0000047,8.26e-09,8;CL:0002336,4.11e-08,1;CL:0002261,4.11e-08,1;CL:0002170,4.11e-08,1;CL:0000148,5.94e-07,10;CL:0000541,5.94e-07,10;CL:1000507,9.25e-07,10;CL:1000494,9.25e-07,10 | |||
|ontology_enrichment_development_v019=CL:0000031;1.35e-11;6 | |||
|ontology_enrichment_disease=DOID:305!3.55e-09!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001737!4.16e-12!9;UBERON:0004119!1.16e-11!169;UBERON:0000925!1.16e-11!169;UBERON:0006595!1.16e-11!169;UBERON:0001007!1.05e-08!155;UBERON:0001555!1.05e-08!155;UBERON:0007026!1.05e-08!155;UBERON:0000063!2.61e-08!97;UBERON:0004921!3.72e-08!129;UBERON:0004185!3.72e-08!129;UBERON:0000064!5.43e-08!219;UBERON:0000077!1.57e-07!130;UBERON:0000481!3.00e-07!347 | |||
|ontology_enrichment_uberon_v019=UBERON:0003891;1.01e-07;4!UBERON:0001737;1.91e-07;9!UBERON:0001557;1.91e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003891,1.12e-07,4;UBERON:0001737,2.05e-07,9;UBERON:0004810,9.25e-07,10 | |||
|phase1_expression=0.363356758541113,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0,0,0,0,0,0,0,0.246242116153576,0,0.313454721478088,0,0,0.125542639594803,0,0,0,0,0,0,0.919421224478927,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0,0,0,0.0945348171640679,0.443458794925128,0.087834785693126,0.0654895377488563,0.364295288292542,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872188104285069,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234321431833797,0,0,0,0.23486899728753,0.323745888736263,0,0,0,0,0,0,0.910161361938026,0.718618141816238,0,0.125118519871964,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,1.09098448236334,0.573609190778008,1.82960559194393,2.38553582978673,3.48581828608555,1.65857688024593,3.28017106138317,2.55484151353081,0,0,0,0,0,0.473227200159376,0.168584690078102,0.482022059766964,1.32352767278873,1.08939722046203,0.474541238222193,0.404493924480493,0.196221465125346,2.69323009862473,0,0,0,0,0,0,0,0,0.245976877086227,0,0.329250856225877,0,0.402115889646523,1.29623823221941,0,1.03993478527958,0,0,0,0,0,0,0,0,0,0,0,0,0.335964256397719,0.992425680696705,0,0.290633938513962,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195801157462741,0.343143423810856,0,0,0,0,1.66435439510497,0,0.496215615637554,1.38115775959256,0,0.256278298511402,0,0,0,0,0,0,0,0,0.362578348774867,0,0.460404944679482,0,0,0,1.35359883872224,0.0770153371044148,0,0,0.105551628892876,0,0,0.215915916102139,0,0.270946437543853,1.50506932156456,0.509752546090077,1.66215201785745,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0.154048617114644,0.15350367472613,0,0,0.435050081742686,0.170453254832202,0.979352392114111,0.165284915360978,0.192190067365106,1.02090169995667,0.10115778085555,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0,0,0,0,0,0.274537029736055,0.471249609382746,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0982490410131212,0,0,0.211107635297664,0,0.379473173765715,0.699869440489966,0.384888450902048,0,1.08890984861323,0.376575203107117,1.29151611801369,0,0.886860307073351,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221158519862449,0.886642856860642,0,0.871507708151921,0.139423744278603,0,0,0,0,0.108647371922008,0,0,0,0,0,0,0,0,0.167821586975843,0.569261198172555,0,0.210998064528027,0,0.565412285735763,0,0,0,0.611030144933625,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0.685946781900644,0.435296032902013,0.17472666824203,0.171986032471617,0.483781656445426,0.292357268344742,0.492692742319255,0.290967049465258,0,0.225980740780532,0,0,0.0633107959558787,0.195551382734803,0,0,0.39961921916426,0.864542502924636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.16495949527454,0.393915911536118,0.247247575143499,0.13480708770837,0,0,0,0,6.91238538399582,5.91419577368105,8.72424709861289,0,0,0,0,0,0,0,0,0.383830394638891,0,0,0,0,0,0,0,0,0,0,0.439656701034247,1.32506888912221,0,0,0,0.704815022316672,0.427149650270779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.358177682162975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279759015438889,0.622077260032973,0,0,0.157265941855896,0,0.678930119816101,0,0,0,0,0,0,0,0,0,0,0,0,0.756215088665154,0,0,0,0,2.59533391365029,0,0,0,0,0,0,0,0.781514011233092,0,0,0.147856086217045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118193840883968,0.222462803784138,0,0,0.560544326627578,0,0,0,0,0,0,0,0,0,0,0.691259661814092,0,0,0,0,0,0,0,0,0,0.121917924982269,0,0,1.1598144313382,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.52434499509095,0,0,0,0,0,0,0.252332849670158,0.109265571963696,0,3.67159787071134,0.801652215796681,0.36757959813938,0.250707539292375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,0,0.320182037633146,0,0.0898252021065869,0,0.122241444182866,0,0,0,0 | |||
|short_description=p3@PCSK9 | |||
}} |
Revision as of 06:11, 12 September 2013
Short description: | p3@PCSK9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_PCSK9_5end |
Coexpression cluster: | C130_iPS_HES3GFP_H9_teratocarcinoma_testicular_colon_Alveolar |
Association with transcript: | -6bp_to_NM_174936_5end |
EntrezGene: | PCSK9 |
HGNC: | 20001 |
UniProt: | Q8NBP7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 2.53e-35 | 5 |
neuron | 1.36e-11 | 6 |
neuroblast | 1.36e-11 | 6 |
electrically signaling cell | 1.36e-11 | 6 |
neuronal stem cell | 8.26e-09 | 8 |
buccal mucosa cell | 4.11e-08 | 1 |
endothelial cell of viscerocranial mucosa | 4.11e-08 | 1 |
keratinized cell of the oral mucosa | 4.11e-08 | 1 |
melanocyte | 5.94e-07 | 10 |
melanoblast | 5.94e-07 | 10 |
kidney tubule cell | 9.25e-07 | 10 |
nephron tubule epithelial cell | 9.25e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
stroma | 1.12e-07 | 4 |
larynx | 2.05e-07 | 9 |
nephron tubule epithelium | 9.25e-07 | 10 |
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