FFCP PHASE1:Mm9::chr16:55822638..55822669,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=80859|HGNC=|UniProt=Q9EST8|association_with_transcript=-387bp_to_ENSMUST00000114458,NM_001159394,uc007zlm.2_5end|description=CAGE_peak_3_at_Nfkbiz_5end|id=chr16:55822638..55822669,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0000066,1.06e-07,25;CL:0002563,1.07e-07,9;CL:0002251,1.07e-07,9;CL:0000223,5.10e-07,20|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000160!1.34e-10!43;UBERON:0004119!2.61e-10!130;UBERON:0000925!2.61e-10!130;UBERON:0006595!2.61e-10!130;UBERON:0001007!2.77e-10!128;UBERON:0001555!2.77e-10!128;UBERON:0007026!2.77e-10!128;UBERON:0004921!8.60e-10!126;UBERON:0004185!8.60e-10!126;UBERON:0005409!1.55e-08!59;UBERON:0000344!6.98e-08!15;UBERON:0001242!1.65e-07!13;UBERON:0000060!1.65e-07!13;UBERON:0001262!1.65e-07!13;UBERON:0004786!1.65e-07!13|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.81e-12,31;UBERON:0001242,7.28e-11,13;UBERON:0001262,7.28e-11,13;UBERON:0004786,7.28e-11,13;UBERON:0000344,2.50e-10,15;UBERON:0001007,1.01e-08,116;UBERON:0001555,1.01e-08,116;UBERON:0007026,1.01e-08,116;UBERON:0005409,1.44e-08,47;UBERON:0004921,1.52e-08,114;UBERON:0004119,2.56e-08,118;UBERON:0000925,2.56e-08,118;UBERON:0006595,2.56e-08,118;UBERON:0003350,1.07e-07,9;UBERON:0004808,1.07e-07,9;UBERON:0001277,1.07e-07,9|phase1_expression=0.960893082628764,5.23463111459042,2.27499619694768,8.16653370528441,6.51164448930251,1.17515490338323,1.40167584357315,1.67860320474049,0.84473233291,0.70219357896598,0,0.239316476986009,1.02720437958723,0.786783621770977,0,0,0,0.157731082679119,0.137114433605739,0.42438965179803,0.595303031057488,0.198581902401771,0,0.95995453676044,1.60586496747019,4.59385571292016,2.15380998079537,1.29282739611533,2.28028103347649,4.28451220591882,1.55211357458713,3.17515336729816,0.61506478758457,0,1.44425809875637,1.66234645358492,3.26670970019791,4.18531630736908,2.3440060335714,2.09409497589519,2.94115744015507,4.09827290975067,1.94204141212461,1.25896817975577,0.709638518536602,1.28482726513177,0,0.218025156380447,0.878744730937887,0.58328969722285,1.25987779462826,0,0.167782606057736,0,0,1.02903774414379,0.286533439938757,2.57836046138721,0,0,0,0.338844532069132,0,0.449949858640699,0,2.1314403448383,0.299600110518405,1.53687322128622,0.103689612308478,0,0,0,0.441737081903227,0,0,0,0,0.510749352340751,0.307213066512487,0,0.0914876436024097,1.04182674111352,0.558365998002762,1.12552522006336,0.15279824777681,0,0,0,0.075726193333184,0.377857800533928,1.73918693221007,1.72084775396277,0.679971333707751,2.69851595818909,1.29955283489534,0.896053774194671,1.12355536105401,0.340860645156116,0.259786004602869,0.35333957451034,0.985903938436763,0,2.54805239706646,0,0.432982082022428,1.52015919285059,1.01104889002957,1.82694207550496,0.776813650941515,0,0,0.304465478312141,0.230615497256059,0.60289056221049,0.117588707135705,0.628332956648377,1.48316980640624,1.01219549843938,0.884610551949874,0.323533699894818,0,0,7.45567044872489,0.878342391034642,1.46612694769419,2.81002760729451,5.99075622529601,5.99902730993408,2.54140454146129,0.299581278809645,0,0,0.173824320192276,0.255715457330331,0.41557608911912,0.324482526135515,0.611036183101898,0.746441823660558,1.0108910337347,1.47309299120532,0.130120442962704,0.229902104433473,0.360124259610698,0.150704817835715,0.272145996605311,0.12811372028485,0,1.55222022443409,0.431135985865684,0.756424320671277,0,0.219195732427575,0.278047249225598,0.348252166522167,0.823128545631774,0,1.40442637462647,3.08817488537658,1.98914449576915,0.414251545071004,0.234526059981096,0,0.23674473558521,0.393528463494808,0,0.232533944750408,0,0.467061369468678,0.329119699826961,0.164167464079095,0.729619285912702,0.146199987425332,0.219550115291051,0.536825675041487,1.47202963994889,0.102904612379284,5.28670052774077,2.64450566663544,0.426576501070468,0,0.257734922644187,0.403367049246685,0.444756087689741,0.760902504450237,1.42358718463353,0.658795818896044,2.76468729680296,1.59165177632921,1.75467678407208,2.69645822596266,1.51296634912286,2.58883655230677,0,0.114248512609729,1.1270773567308,0.203651327845314,0.387904974335251,0.631222379012867,0.758838445491087,0.590440591918409,0.470996183524124,1.1105744752962,1.48226313543574,0.166845105716094,0,0,0.202860121388503,0,0.50925170356284,0.575392274901621,0.972811360650212,1.92192989231657,10.0637744569148,1.48856379067401,4.05648975048929,2.77836765741823,1.61457672169721,2.41221760681684,0.923765950833023,0,0.488894929326078,0.169745085775188,0.234690248288502,1.00503754465089,1.6663054862021,1.75620283072019,1.26108115284953,0.8858587585951,1.2756381492599,0.491589944147214,0.690739927463582,2.60368305446721,3.01582567878545,0.54390568381871,2.95058563811422,0.551873492609465,0.80275294993896,0.117211686592203,0.327869890753351,0.252470927204373,0.315508219416257,0.390438744296638,0.861693590931196,0.716906393857656,0.222798674082394,0.283076530788832,0.404810701674894,0,0.790575555893047,0,0.99358059645788,0.71226241466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| ||
|EntrezGene=80859 | |||
|HGNC= | |||
|UniProt=Q9EST8 | |||
|association_with_transcript=-387bp_to_ENSMUST00000114458,NM_001159394,uc007zlm.2_5end | |||
|description=CAGE_peak_3_at_Nfkbiz_5end | |||
|id=chr16:55822638..55822669,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.06e-07,25;CL:0002563,1.07e-07,9;CL:0002251,1.07e-07,9;CL:0000223,5.10e-07,20 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!1.34e-10!43;UBERON:0004119!2.61e-10!130;UBERON:0000925!2.61e-10!130;UBERON:0006595!2.61e-10!130;UBERON:0001007!2.77e-10!128;UBERON:0001555!2.77e-10!128;UBERON:0007026!2.77e-10!128;UBERON:0004921!8.60e-10!126;UBERON:0004185!8.60e-10!126;UBERON:0005409!1.55e-08!59;UBERON:0000344!6.98e-08!15;UBERON:0001242!1.65e-07!13;UBERON:0000060!1.65e-07!13;UBERON:0001262!1.65e-07!13;UBERON:0004786!1.65e-07!13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.81e-12,31;UBERON:0001242,7.28e-11,13;UBERON:0001262,7.28e-11,13;UBERON:0004786,7.28e-11,13;UBERON:0000344,2.50e-10,15;UBERON:0001007,1.01e-08,116;UBERON:0001555,1.01e-08,116;UBERON:0007026,1.01e-08,116;UBERON:0005409,1.44e-08,47;UBERON:0004921,1.52e-08,114;UBERON:0004119,2.56e-08,118;UBERON:0000925,2.56e-08,118;UBERON:0006595,2.56e-08,118;UBERON:0003350,1.07e-07,9;UBERON:0004808,1.07e-07,9;UBERON:0001277,1.07e-07,9 | |||
|phase1_expression=0.960893082628764,5.23463111459042,2.27499619694768,8.16653370528441,6.51164448930251,1.17515490338323,1.40167584357315,1.67860320474049,0.84473233291,0.70219357896598,0,0.239316476986009,1.02720437958723,0.786783621770977,0,0,0,0.157731082679119,0.137114433605739,0.42438965179803,0.595303031057488,0.198581902401771,0,0.95995453676044,1.60586496747019,4.59385571292016,2.15380998079537,1.29282739611533,2.28028103347649,4.28451220591882,1.55211357458713,3.17515336729816,0.61506478758457,0,1.44425809875637,1.66234645358492,3.26670970019791,4.18531630736908,2.3440060335714,2.09409497589519,2.94115744015507,4.09827290975067,1.94204141212461,1.25896817975577,0.709638518536602,1.28482726513177,0,0.218025156380447,0.878744730937887,0.58328969722285,1.25987779462826,0,0.167782606057736,0,0,1.02903774414379,0.286533439938757,2.57836046138721,0,0,0,0.338844532069132,0,0.449949858640699,0,2.1314403448383,0.299600110518405,1.53687322128622,0.103689612308478,0,0,0,0.441737081903227,0,0,0,0,0.510749352340751,0.307213066512487,0,0.0914876436024097,1.04182674111352,0.558365998002762,1.12552522006336,0.15279824777681,0,0,0,0.075726193333184,0.377857800533928,1.73918693221007,1.72084775396277,0.679971333707751,2.69851595818909,1.29955283489534,0.896053774194671,1.12355536105401,0.340860645156116,0.259786004602869,0.35333957451034,0.985903938436763,0,2.54805239706646,0,0.432982082022428,1.52015919285059,1.01104889002957,1.82694207550496,0.776813650941515,0,0,0.304465478312141,0.230615497256059,0.60289056221049,0.117588707135705,0.628332956648377,1.48316980640624,1.01219549843938,0.884610551949874,0.323533699894818,0,0,7.45567044872489,0.878342391034642,1.46612694769419,2.81002760729451,5.99075622529601,5.99902730993408,2.54140454146129,0.299581278809645,0,0,0.173824320192276,0.255715457330331,0.41557608911912,0.324482526135515,0.611036183101898,0.746441823660558,1.0108910337347,1.47309299120532,0.130120442962704,0.229902104433473,0.360124259610698,0.150704817835715,0.272145996605311,0.12811372028485,0,1.55222022443409,0.431135985865684,0.756424320671277,0,0.219195732427575,0.278047249225598,0.348252166522167,0.823128545631774,0,1.40442637462647,3.08817488537658,1.98914449576915,0.414251545071004,0.234526059981096,0,0.23674473558521,0.393528463494808,0,0.232533944750408,0,0.467061369468678,0.329119699826961,0.164167464079095,0.729619285912702,0.146199987425332,0.219550115291051,0.536825675041487,1.47202963994889,0.102904612379284,5.28670052774077,2.64450566663544,0.426576501070468,0,0.257734922644187,0.403367049246685,0.444756087689741,0.760902504450237,1.42358718463353,0.658795818896044,2.76468729680296,1.59165177632921,1.75467678407208,2.69645822596266,1.51296634912286,2.58883655230677,0,0.114248512609729,1.1270773567308,0.203651327845314,0.387904974335251,0.631222379012867,0.758838445491087,0.590440591918409,0.470996183524124,1.1105744752962,1.48226313543574,0.166845105716094,0,0,0.202860121388503,0,0.50925170356284,0.575392274901621,0.972811360650212,1.92192989231657,10.0637744569148,1.48856379067401,4.05648975048929,2.77836765741823,1.61457672169721,2.41221760681684,0.923765950833023,0,0.488894929326078,0.169745085775188,0.234690248288502,1.00503754465089,1.6663054862021,1.75620283072019,1.26108115284953,0.8858587585951,1.2756381492599,0.491589944147214,0.690739927463582,2.60368305446721,3.01582567878545,0.54390568381871,2.95058563811422,0.551873492609465,0.80275294993896,0.117211686592203,0.327869890753351,0.252470927204373,0.315508219416257,0.390438744296638,0.861693590931196,0.716906393857656,0.222798674082394,0.283076530788832,0.404810701674894,0,0.790575555893047,0,0.99358059645788,0.712262414669021,0.488660878060728,0.659880491890142,1.32745138339963,0.242780636154981,0.604647113929502,0.377210159511796,1.47650946440386,0.614870295887855,1.03371317267288,1.45413491791002,0.712994756769443,0.948110273807448,2.10837217149998,2.06271086496374,0.680879211507576,0.900305470156551,0.517434735131018,0.214337035031592,0.177340233642274,0.356737635204141,0.493647061806363,0.913394847343798,0.469343416127421,0.63549621259146,0.661585194164886,0.98931751764888,0.161464426695906,0.482503399425247,0.238744688006273,0.984845398470368,1.45740418314925,0.18542530201051,0.341741761595705,0.619160603889667,0.370389054739423,0,0.136694227721025,0.228778173206523,5.43930975980337,8.11718423477216,5.38979897837253,1.90934123603023,0.474503990371703,1.21991680276109,0.540026704109006,0.418176592028937,0.655087691238533,0.134864346384821,1.1571483801547,0.26175594198403,3.24037433229482,1.86401793926078,0,0.149516546043979,0.165458490457098,0.194451188344048,0.258319646955462,0.337912250981556,0.58678619322877,1.0416350787516,0.419437377702843,0.241584120826006,0,1.26404448251271,0.202725215290164,0.308132871494482,0.129920822977795,0.179026695667481,0.198681354781265,0.360586348559907,0.147689527174577,0.504832249740738,0.228620419965,0.302478555410522,0.292373642219257,0.577271049841977,0.467507608726276,0.453460767230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| |||
|short_description=p3@Nfkbiz | |||
}} | |||
Revision as of 12:54, 13 September 2013
| Short description: | p3@Nfkbiz |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_3_at_Nfkbiz_5end |
| Coexpression cluster: | NA |
| Association with transcript: | -387bp_to_ENSMUST00000114458, NM_001159394, uc007zlm.2_5end |
| EntrezGene: | Nfkbiz |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| epithelial cell | 1.06e-07 | 25 |
| intestinal epithelial cell | 1.07e-07 | 9 |
| epithelial cell of alimentary canal | 1.07e-07 | 9 |
| endodermal cell | 5.10e-07 | 20 |
| Ontology term | p-value | n |
|---|---|---|
| intestine | 1.81e-12 | 31 |
| intestinal mucosa | 7.28e-11 | 13 |
| wall of intestine | 7.28e-11 | 13 |
| gastrointestinal system mucosa | 7.28e-11 | 13 |
| mucosa | 2.50e-10 | 15 |
| digestive system | 1.01e-08 | 116 |
| digestive tract | 1.01e-08 | 116 |
| primitive gut | 1.01e-08 | 116 |
| gastrointestinal system | 1.44e-08 | 47 |
| subdivision of digestive tract | 1.52e-08 | 114 |
| endoderm-derived structure | 2.56e-08 | 118 |
| endoderm | 2.56e-08 | 118 |
| presumptive endoderm | 2.56e-08 | 118 |
| epithelium of mucosa | 1.07e-07 | 9 |
| gastrointestinal system epithelium | 1.07e-07 | 9 |
| intestinal epithelium | 1.07e-07 | 9 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
