FFCP PHASE1:Mm9::chr1:22519355..22519398,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=30|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr1:22519355..22519398,-|id=chr1:22519355..22519398,-|ontology_enrichment_celltype=CL:0002612!2.36e-07!3;CL:0002614!3.89e-07!3|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003076!2.89e-19!12;UBERON:0003057!2.89e-19!12;UBERON:0004733!1.40e-13!6;UBERON:0004732!1.40e-13!6;UBERON:0002028!1.40e-13!6;UBERON:0007277!1.40e-13!6;UBERON:0002298!5.48e-13!6;UBERON:0001896!9.28e-11!2;UBERON:0005290!9.28e-11!2;UBERON:0010096!9.28e-11!2;UBERON:0001049!1.82e-09!52;UBERON:0005068!1.82e-09!52;UBERON:0006241!1.82e-09!52;UBERON:0007135!1.82e-09!52;UBERON:0002420!1.92e-09!8;UBERON:0007245!1.92e-09!8;UBERON:0010009!1.92e-09!8;UBERON:0010011!1.92e-09!8;UBERON:0000454!1.92e-09!8;UBERON:0002240!1.15e-07!6;UBERON:0005174!1.15e-07!6;UBERON:0001137!1.15e-07!6;UBERON:0002257!2.36e-07!3;UBERON:0002038!3.89e-07!3;UBERON:0002308!3.89e-07!3;UBERON:0009663!3.89e-07!3;UBERON:0009661!3.89e-07!3;UBERON:0006331!3.89e-07!3;UBERON:0000125!3.89e-07!3|ontology_enrichment_uberon_v019_2=UBERON:0004733,2.62e-33,6;UBERON:0004732,2.62e-33,6;UBERON:0002028,2.62e-33,6;UBERON:0007277,2.62e-33,6;UBERON:0002037,6.55e-23,4;UBERON:0002680,6.55e-23,4;UBERON:0001895,6.55e-23,4;UBERON:0010092,6.55e-23,4;UBERON:0006215,6.55e-23,4;UBERON:0003076,3.40e-17,12;UBERON:0003057,3.40e-17,12;UBERON:0001896,5.17e-12,2;UBERON:0002298,5.17e-12,2;UBERON:0005290,5.17e-12,2;UBERON:0010096,5.17e-12,2|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.38121212422995,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0914876436024097,0,0.558365998002762,0,0.15279824777681,0.589257170947335,0.284743361598206,0,0,0,0,0,0,0,0,0,0.561777680527007,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,47.1377083188591,53.6183569442445,0,0,0,0,0,0.457500602818626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.60550589987792,0.468846746368813,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18542530201051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209613162627982,0.183843508450014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846146078916765,0,0,0,0,0.118635018124174,0,0,0,0,0,0,0.214871054048298,0,0,0|short_description=p@chr1:22519355..22519398,-}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=30 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr1:22519355..22519398,- | |||
|id=chr1:22519355..22519398,- | |||
|ontology_enrichment_celltype=CL:0002612!2.36e-07!3;CL:0002614!3.89e-07!3 | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003076!2.89e-19!12;UBERON:0003057!2.89e-19!12;UBERON:0004733!1.40e-13!6;UBERON:0004732!1.40e-13!6;UBERON:0002028!1.40e-13!6;UBERON:0007277!1.40e-13!6;UBERON:0002298!5.48e-13!6;UBERON:0001896!9.28e-11!2;UBERON:0005290!9.28e-11!2;UBERON:0010096!9.28e-11!2;UBERON:0001049!1.82e-09!52;UBERON:0005068!1.82e-09!52;UBERON:0006241!1.82e-09!52;UBERON:0007135!1.82e-09!52;UBERON:0002420!1.92e-09!8;UBERON:0007245!1.92e-09!8;UBERON:0010009!1.92e-09!8;UBERON:0010011!1.92e-09!8;UBERON:0000454!1.92e-09!8;UBERON:0002240!1.15e-07!6;UBERON:0005174!1.15e-07!6;UBERON:0001137!1.15e-07!6;UBERON:0002257!2.36e-07!3;UBERON:0002038!3.89e-07!3;UBERON:0002308!3.89e-07!3;UBERON:0009663!3.89e-07!3;UBERON:0009661!3.89e-07!3;UBERON:0006331!3.89e-07!3;UBERON:0000125!3.89e-07!3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004733,2.62e-33,6;UBERON:0004732,2.62e-33,6;UBERON:0002028,2.62e-33,6;UBERON:0007277,2.62e-33,6;UBERON:0002037,6.55e-23,4;UBERON:0002680,6.55e-23,4;UBERON:0001895,6.55e-23,4;UBERON:0010092,6.55e-23,4;UBERON:0006215,6.55e-23,4;UBERON:0003076,3.40e-17,12;UBERON:0003057,3.40e-17,12;UBERON:0001896,5.17e-12,2;UBERON:0002298,5.17e-12,2;UBERON:0005290,5.17e-12,2;UBERON:0010096,5.17e-12,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.38121212422995,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0914876436024097,0,0.558365998002762,0,0.15279824777681,0.589257170947335,0.284743361598206,0,0,0,0,0,0,0,0,0,0.561777680527007,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,47.1377083188591,53.6183569442445,0,0,0,0,0,0.457500602818626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.60550589987792,0.468846746368813,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18542530201051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209613162627982,0.183843508450014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846146078916765,0,0,0,0,0.118635018124174,0,0,0,0,0,0,0.214871054048298,0,0,0 | |||
|short_description=p@chr1:22519355..22519398,- | |||
}} |
Revision as of 20:10, 13 September 2013
Short description: | p@chr1:22519355..22519398, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr1:22519355..22519398, - |
Coexpression cluster: | MCL_coexpression_mm9:30 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
segmental subdivision of hindbrain | 2.62e-33 | 6 |
segmental subdivision of nervous system | 2.62e-33 | 6 |
hindbrain | 2.62e-33 | 6 |
presumptive hindbrain | 2.62e-33 | 6 |
cerebellum | 6.55e-23 | 4 |
regional part of metencephalon | 6.55e-23 | 4 |
metencephalon | 6.55e-23 | 4 |
future metencephalon | 6.55e-23 | 4 |
rhombic lip | 6.55e-23 | 4 |
posterior neural tube | 3.40e-17 | 12 |
chordal neural plate | 3.40e-17 | 12 |
medulla oblongata | 5.17e-12 | 2 |
brainstem | 5.17e-12 | 2 |
myelencephalon | 5.17e-12 | 2 |
future myelencephalon | 5.17e-12 | 2 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.