FFCP PHASE1:Hg19::chr7:138482933..138482946,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=50617|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=866|TSSclassifier=S|UniProt=Q9HBG4,A4D1R4,Q32M47|association_with_transcript=0bp_to_ENST00000310018,NM_020632,NM_130840,uc003vug.2,uc003vuh.2_5end|coexpression_cluster_id=C1471|description=CAGE_peak_2_at_ATP6V0A4_5end|id=chr7:138482933..138482946,-|ontology_enrichment_celltype=CL:0000239!9.44e-17!3;CL:1000615!9.44e-17!3;CL:0002306!9.44e-17!3;CL:0002322!2.13e-16!5;CL:1000507!4.05e-07!12;CL:1000494!4.05e-07!12|ontology_enrichment_celltype_v019=CL:0000239;8.50e-23;3!CL:1000615;8.50e-23;3!CL:0002306;8.50e-23;3!CL:1000507;1.65e-07;10!CL:1000494;1.65e-07;10|ontology_enrichment_celltype_v019_2=CL:0000239,8.04e-23,3;CL:1000615,8.04e-23,3;CL:0002306,8.04e-23,3;CL:1000507,1.62e-07,10;CL:1000494,1.62e-07,10|ontology_enrichment_development_v019=UBERON:0006298;3.44e-18;1!UBERON:0008801;5.26e-18;1!UBERON:0003918;1.15e-07;10!UBERON:0007687;1.15e-07;10|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0006853!9.44e-17!3;UBERON:0007685!9.44e-17!3;UBERON:0004134!9.44e-17!3;UBERON:0001829!3.53e-12!2;UBERON:0003127!9.31e-12!2;UBERON:0001044!5.97e-09!6;UBERON:0003293!5.97e-09!6;UBERON:0003294!5.97e-09!6;UBERON:0010047!5.97e-09!6;UBERON:0000167!5.97e-09!6;UBERON:0002113!8.82e-09!27;UBERON:0003918!8.82e-09!27;UBERON:0005095!8.82e-09!27;UBERON:0007687!8.82e-09!27;UBERON:0006947!6.21e-08!3;UBERON:0004054!6.21e-08!3;UBERON:0003135!1.34e-07!11;UBERON:0006555!1.65e-07!17;UBERON:0005103!1.65e-07!17;UBERON:0000083!1.65e-07!17;UBERON:0009201!1.65e-07!17;UBERON:0004819!1.65e-07!17;UBERON:0006553!1.65e-07!17;UBERON:0003074!1.65e-07!17;UBERON:0003060!1.65e-07!17;UBERON:0000489!2.91e-07!32;UBERON:0009773!4.05e-07!12;UBERON:0001231!4.05e-07!12;UBERON:0004810!4.05e-07!12;UBERON:0003103!4.23e-07!69;UBERON:0000080!4.48e-07!18;UBERON:0002120!4.48e-07!18;UBERON:0004875!4.48e-07!18;UBERON:0005721!4.48e-07!18;UBERON:0005754!4.48e-07!18;UBERON:0007297!4.48e-07!18;UBERON:0001736!5.90e-07!1;UBERON:0006298!5.90e-07!1;UBERON:0001831!6.96e-07!1;UBERON:0001567!6.96e-07!1;UBERON:0008801!6.96e-07!1|ontology_enrichment_uberon_v019=UBERON:0001829;2.38e-34;2!UBERON:0001044;8.17e-26;6!UBERON:0003293;8.17e-26;6!UBERON:0003294;8.17e-26;6!UBERON:0010047;8.17e-26;6!UBERON:0003408;8.17e-26;6!UBERON:0000167;8.17e-26;6!UBERON:0006853;8.50e-23;3!UBERON:0007685;8.50e-23;3!UBERON:0004134;8.50e-23;3!UBERON:0001736;3.44e-18;1!UBERON:0001831;5.26e-18;1!UBERON:0001567;5.26e-18;1!UBERON:0005795;9.49e-18;1!UBERON:0001041;1.88e-11;14!UBERON:0002113;2.14e-11;24!UBERON:0011143;2.14e-11;24!UBERON:0004089;1.12e-09;2!UBERON:0000489;1.75e-09;29!UBERON:0003127;1.86e-09;2!UBERON:0006554;3.55e-09;30!UBERON:0001008;3.55e-09;30!UBERON:0002365;7.49e-09;31!UBERON:0002330;7.49e-09;31!UBERON:0000161;1.37e-08;19!UBERON:0000166;1.37e-08;19!UBERON:0004211;1.65e-07;10!UBERON:0009773;1.65e-07;10!UBERON:0001231;1.65e-07;10!UBERON:0004810;1.65e-07;10|ontology_enrichment_uberon_v019_2=UBERON:0001829,2.18e-34,2;UBERON:0001044,7.84e-26,6;UBERON:0003293,7.84e-26,6;UBERON:0003294,7.84e-26,6;UBERON:0010047,7.84e-26,6;UBERON:0000167,7.84e-26,6;UBERON:0006853,8.04e-23,3;UBERON:0007685,8.04e-23,3;UBERON:0004134,8.04e-23,3;UBERON:0001736,3.16e-18,1;UBERON:0006298,3.16e-18,1;UBERON:0001831,5.26e-18,1;UBERON:0001567,5.26e-18,1;UBERON:0008801,5.26e-18,1;UBERON:0003408,8.65e-16,10;UBERON:0002113,1.52e-10,26;UBERON:0003918,1.52e-10,26;UBERON:0011143,1.52e-10,26;UBERON:0005095,1.52e-10,26;UBERON:0007687,1.52e-10,26;UBERON:0004089,1.12e-09,2;UBERON:0003127,1.71e-09,2;UBERON:0002365,6.33e-09,31;UBERON:0002330,6.33e-09,31;UBERON:0000489,6.88e-09,31;UBERON:0005172,1.09e-07,54;UBERON:0005173,1.09e-07,54;UBERON:0004810,1.62e-07,10;UBERON:0000166,1.70e-07,22;UBERON:0002417,6.46e-07,60;UBERON:0000916,6.46e-07,60|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.94702919869853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0.265059536642971,0.348581828608555,0,0.504641701751257,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,1.52925763827023,3.3243040357149,0.447749509444357,0,0,0,0,0,0.824328093181778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=50617 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=866 | |||
|TSSclassifier=S | |||
|UniProt=Q9HBG4,A4D1R4,Q32M47 | |||
|association_with_transcript=0bp_to_ENST00000310018,NM_020632,NM_130840,uc003vug.2,uc003vuh.2_5end | |||
|coexpression_cluster_id=C1471 | |||
|description=CAGE_peak_2_at_ATP6V0A4_5end | |||
|id=chr7:138482933..138482946,- | |||
|ontology_enrichment_celltype=CL:0000239!9.44e-17!3;CL:1000615!9.44e-17!3;CL:0002306!9.44e-17!3;CL:0002322!2.13e-16!5;CL:1000507!4.05e-07!12;CL:1000494!4.05e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0000239;8.50e-23;3!CL:1000615;8.50e-23;3!CL:0002306;8.50e-23;3!CL:1000507;1.65e-07;10!CL:1000494;1.65e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,8.04e-23,3;CL:1000615,8.04e-23,3;CL:0002306,8.04e-23,3;CL:1000507,1.62e-07,10;CL:1000494,1.62e-07,10 | |||
|ontology_enrichment_development_v019=UBERON:0006298;3.44e-18;1!UBERON:0008801;5.26e-18;1!UBERON:0003918;1.15e-07;10!UBERON:0007687;1.15e-07;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0006853!9.44e-17!3;UBERON:0007685!9.44e-17!3;UBERON:0004134!9.44e-17!3;UBERON:0001829!3.53e-12!2;UBERON:0003127!9.31e-12!2;UBERON:0001044!5.97e-09!6;UBERON:0003293!5.97e-09!6;UBERON:0003294!5.97e-09!6;UBERON:0010047!5.97e-09!6;UBERON:0000167!5.97e-09!6;UBERON:0002113!8.82e-09!27;UBERON:0003918!8.82e-09!27;UBERON:0005095!8.82e-09!27;UBERON:0007687!8.82e-09!27;UBERON:0006947!6.21e-08!3;UBERON:0004054!6.21e-08!3;UBERON:0003135!1.34e-07!11;UBERON:0006555!1.65e-07!17;UBERON:0005103!1.65e-07!17;UBERON:0000083!1.65e-07!17;UBERON:0009201!1.65e-07!17;UBERON:0004819!1.65e-07!17;UBERON:0006553!1.65e-07!17;UBERON:0003074!1.65e-07!17;UBERON:0003060!1.65e-07!17;UBERON:0000489!2.91e-07!32;UBERON:0009773!4.05e-07!12;UBERON:0001231!4.05e-07!12;UBERON:0004810!4.05e-07!12;UBERON:0003103!4.23e-07!69;UBERON:0000080!4.48e-07!18;UBERON:0002120!4.48e-07!18;UBERON:0004875!4.48e-07!18;UBERON:0005721!4.48e-07!18;UBERON:0005754!4.48e-07!18;UBERON:0007297!4.48e-07!18;UBERON:0001736!5.90e-07!1;UBERON:0006298!5.90e-07!1;UBERON:0001831!6.96e-07!1;UBERON:0001567!6.96e-07!1;UBERON:0008801!6.96e-07!1 | |||
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|ontology_enrichment_uberon_v019_2=UBERON:0001829,2.18e-34,2;UBERON:0001044,7.84e-26,6;UBERON:0003293,7.84e-26,6;UBERON:0003294,7.84e-26,6;UBERON:0010047,7.84e-26,6;UBERON:0000167,7.84e-26,6;UBERON:0006853,8.04e-23,3;UBERON:0007685,8.04e-23,3;UBERON:0004134,8.04e-23,3;UBERON:0001736,3.16e-18,1;UBERON:0006298,3.16e-18,1;UBERON:0001831,5.26e-18,1;UBERON:0001567,5.26e-18,1;UBERON:0008801,5.26e-18,1;UBERON:0003408,8.65e-16,10;UBERON:0002113,1.52e-10,26;UBERON:0003918,1.52e-10,26;UBERON:0011143,1.52e-10,26;UBERON:0005095,1.52e-10,26;UBERON:0007687,1.52e-10,26;UBERON:0004089,1.12e-09,2;UBERON:0003127,1.71e-09,2;UBERON:0002365,6.33e-09,31;UBERON:0002330,6.33e-09,31;UBERON:0000489,6.88e-09,31;UBERON:0005172,1.09e-07,54;UBERON:0005173,1.09e-07,54;UBERON:0004810,1.62e-07,10;UBERON:0000166,1.70e-07,22;UBERON:0002417,6.46e-07,60;UBERON:0000916,6.46e-07,60 | |||
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|short_description=p2@ATP6V0A4 | |||
}} |
Revision as of 23:28, 13 September 2013
Short description: | p2@ATP6V0A4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_ATP6V0A4_5end |
Coexpression cluster: | C1471_salivary_kidney_submaxillary_parotid_adenocarcinoma_trachea_ductus |
Association with transcript: | 0bp_to_ENST00000310018, NM_020632, NM_130840, uc003vug.2, uc003vuh.2_5end |
EntrezGene: | ATP6V0A4 |
HGNC: | 866 |
UniProt: | Q9HBG4A4D1R4Q32M47 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 8.04e-23 | 3 |
kidney cortex tubule cell | 8.04e-23 | 3 |
epithelial cell of proximal tubule | 8.04e-23 | 3 |
kidney tubule cell | 1.62e-07 | 10 |
nephron tubule epithelial cell | 1.62e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
major salivary gland | 2.18e-34 | 2 |
saliva-secreting gland | 7.84e-26 | 6 |
gland of oral region | 7.84e-26 | 6 |
gland of foregut | 7.84e-26 | 6 |
oral gland | 7.84e-26 | 6 |
oral cavity | 7.84e-26 | 6 |
renal cortex tubule | 8.04e-23 | 3 |
region of nephron tubule | 8.04e-23 | 3 |
proximal tubule | 8.04e-23 | 3 |
submandibular gland | 3.16e-18 | 1 |
submandibular gland primordium | 3.16e-18 | 1 |
parotid gland | 5.26e-18 | 1 |
cheek | 5.26e-18 | 1 |
parotid gland primordium | 5.26e-18 | 1 |
gland of gut | 8.65e-16 | 10 |
kidney | 1.52e-10 | 26 |
kidney mesenchyme | 1.52e-10 | 26 |
upper urinary tract | 1.52e-10 | 26 |
kidney rudiment | 1.52e-10 | 26 |
kidney field | 1.52e-10 | 26 |
midface | 1.12e-09 | 2 |
open tracheal system trachea | 1.71e-09 | 2 |
exocrine gland | 6.33e-09 | 31 |
exocrine system | 6.33e-09 | 31 |
cavitated compound organ | 6.88e-09 | 31 |
abdomen element | 1.09e-07 | 54 |
abdominal segment element | 1.09e-07 | 54 |
nephron tubule epithelium | 1.62e-07 | 10 |
oral opening | 1.70e-07 | 22 |
abdominal segment of trunk | 6.46e-07 | 60 |
abdomen | 6.46e-07 | 60 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.