FFCP PHASE1:Mm9::chr3:129539692..129539722,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=12630|HGNC=|MCL_coexpression_id=8|UniProt=Q61129|association_with_transcript=35bp_to_NM_007686,uc008rin.1_5end|description=CAGE_peak_1_at_Cfi_5end|id=chr3:129539692..129539722,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002107!3.17e-16!22;UBERON:0007499!3.17e-16!22;UBERON:0006925!3.17e-16!22;UBERON:0009497!3.17e-16!22;UBERON:0000015!3.17e-16!22;UBERON:0002423!3.17e-16!22;UBERON:0006235!3.17e-16!22;UBERON:0008835!3.17e-16!22;UBERON:0003894!3.17e-16!22;UBERON:0004161!3.17e-16!22;UBERON:0008836!3.17e-16!22;UBERON:0009854!3.99e-16!23;UBERON:0009856!3.99e-16!23;UBERON:0005172!4.35e-14!49;UBERON:0005173!4.35e-14!49;UBERON:0002417!4.35e-14!49;UBERON:0000916!4.35e-14!49;UBERON:0002365!1.25e-12!25;UBERON:0002330!1.25e-12!25;UBERON:0009569!1.42e-11!66;UBERON:0004119!1.38e-10!130;UBERON:0000925!1.38e-10!130;UBERON:0006595!1.38e-10!130;UBERON:0005177!4.54e-10!85;UBERON:0001007!4.71e-10!128;UBERON:0001555!4.71e-10!128;UBERON:0007026!4.71e-10!128;UBERON:0004921!1.36e-09!126;UBERON:0004185!1.36e-09!126;UBERON:0005409!7.86e-09!59;UBERON:0005256!8.31e-09!47;UBERON:0000466!2.77e-07!79;UBERON:0002100!2.89e-07!98;UBERON:0000160!5.24e-07!43;UBERON:0003914!6.07e-07!47|ontology_enrichment_uberon_v019_2=UBERON:0002107,3.31e-18,22;UBERON:0007499,3.31e-18,22;UBERON:0006925,3.31e-18,22;UBERON:0009497,3.31e-18,22;UBERON:0000015,3.31e-18,22;UBERON:0002423,3.31e-18,22;UBERON:0006235,3.31e-18,22;UBERON:0008835,3.31e-18,22;UBERON:0003894,3.31e-18,22;UBERON:0004161,3.31e-18,22;UBERON:0008836,3.31e-18,22;UBERON:0009854,4.29e-18,23;UBERON:0009856,4.29e-18,23;UBERON:0005172,2.14e-15,49;UBERON:0005173,2.14e-15,49;UBERON:0002417,2.14e-15,49;UBERON:0000916,2.14e-15,49;UBERON:0002365,1.19e-14,25;UBERON:0002330,1.19e-14,25;UBERON:0005177,4.41e-12,79;UBERON:0009569,8.17e-11,66;UBERON:0004119,2.35e-09,118;UBERON:0000925,2.35e-09,118;UBERON:0006595,2.35e-09,118;UBERON:0005256,5.85e-09,45;UBERON:0001007,8.12e-09,116;UBERON:0001555,8.12e-09,116;UBERON:0007026,8.12e-09,116;UBERON:0005409,1.07e-08,47;UBERON:0003104,2.05e-08,61;UBERON:0009142,2.05e-08,61;UBERON:0004921,2.37e-08,114;UBERON:0002100,2.37e-08,90|phase1_expression=0.320297694209588,2.44282785347553,4.09499315450582,1.51232105653415,2.50447864973174,5.37213670118047,5.60670337429262,0,0,0,0,0,0,0,0,0,0,0,0,0,2.8064285749853,0,0,13.759348360233,8.02932483735095,2.29692785646008,6.03066794622705,6.03319451520489,2.47030445293286,1.51218077855958,2.88249663851896,0,0,0,4.62162591602039,2.49351968037739,3.67504841272264,0,0,0,0,0,0.485510353031154,0,0,0,0,0,0.439372365468944,0.972149495371417,0.139986421625363,0,0,0,0,0,0.286533439938757,0.515672092277442,0,0,0,0,0,0,0,0,0.599200221036809,0.768436610643109,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.075726193333184,0,8.11620568364698,782.12530417608,725.52941306617,814.951819373104,951.272675143388,732.523960404144,194.515521882476,0,0,0,0.563373679106722,0,0,0,0,0,0,315.375875784044,0,4.75014845007439,8.15381035800839,16.1366703505435,32.5167851131042,17.3331036635516,12.4644029563847,4.90099706185734,320.117483216014,0,0,0.161766849947409,0,0,3.72783522436244,0,0,3.57639877292028,0,0,0,0,0,0,0,0,0,0,2.03678727700633,0.373220911830279,1.51633655060205,0,0,0,0,12.3577950625286,0,0,0.0937017245597288,0,0,1.32374256117473,0,0,0,0.348252166522167,0,0.995171334092466,0,0,0,1.44988040774851,3.98694301967864,0.180062061461015,0.710234206755631,1.18058539048442,0.462801338662135,0.232533944750408,0,0,0.16455984991348,0.164167464079095,0,0,0.219550115291051,0.402619256281115,0,0.102904612379284,1.65209391491899,4.23120906661671,3.62590025909898,12.7730169523241,17.0105048945163,30.4542122181247,34.24621875211,53.8338521898542,6.64340686162316,44.798115684931,27.1442025504291,27.4559931416788,22.0309418444606,4.49409704327111,1.51296634912286,1.59313018603494,1.51734320762465,6.740662243974,5.63538678365402,11.6081256871829,19.0073437424273,19.4977579295086,8.72664212314751,2.21415221969403,2.82597710114475,3.08492909804501,1055.37135243025,64.0685205949801,90.2205787569602,128.171404059367,197.382898111013,324.865634186505,475.386465275911,481.027941817755,416.201127131516,729.784236253921,1061.00936417188,1041.62251252414,1162.34033235174,777.43778632121,646.727675746493,903.616715513587,0.184753190166605,5.11626811780309,10.1038285394056,9.16623463186016,7.51008794523207,2.1775813467436,3.33261097240419,0.585400943573396,0.630540576424764,0,0.956728611944923,0.491589944147214,0.172684981865896,0,0,0,0,0,0,0,0,0,0.631016438832513,0,0,0.477937595905104,0.445597348164788,0.283076530788832,2.02405350837447,0,0,0,0.99358059645788,10.3278050127008,1.79175655288934,13.1976098378028,0,12.867373716214,16.6277956330613,47.3398750187304,38.3892460745005,33.5104311258881,27.6518273689997,16.7225515559653,12.1209108650805,1.58018378967908,0,0,0,0,0,0,0,0,0,0,12.2029288193129,21.6068712281097,0,0,0.161464426695906,0,0,0,5.24665505933731,0,0,2.06386867963222,1.11116716421827,0,0,0.228778173206523,0,0,0,70.6456257331184,6.32671987162271,26.0248917922366,49.0344247330978,63.5628419883985,93.0224521558717,100.339073710307,191.012136181251,87.1647286806819,0,0,0,0.149516546043979,0.165458490457098,0,0.387479470433193,0,0.352071715937262,16.5359568751817,0.104859344425711,0,0,0,0.202725215290164,0,0,0,0,0,0,0,0,0.100826185136841,0,0.288635524920988,0,0,0,0,0,0.386379188064381,1.12609485270709,27.4727436400898,0.428736758158132,0,0,0,0,0,0,0,0,0,0,0,0.207574695168353,5.1873233542134,16.561159758151,38.4108612967905,17.6075056607505,25.554247674552,49.116526844157,42.6492568484511,47.4960430195887,47.2543785998301,44.358877480792,37.9138946186013,37.8311690178325,38.8632675097557,39.7453445172844,42.3901385241936,38.5894805396369,42.0542100610877,35.0273015682811,45.4844663215288,50.0589108482706,41.529338641285,49.8331636989901,45.4934284059188,45.9253776426813,43.40729384843,41.8905057878649,43.6695720986819,48.2104604152809,61.1645076106935,37.1327606728665,37.1361898555874,45.0154147486658,43.0724418496985,55.1712907406064,0.249810577937946,48.1899113397541,55.2218608904127,0.765153328275374,10.5883881177367,1.39120701372253|short_description=p1@Cfi}} | ||
|EntrezGene=12630 | |||
|HGNC= | |||
|MCL_coexpression_id=8 | |||
|UniProt=Q61129 | |||
|association_with_transcript=35bp_to_NM_007686,uc008rin.1_5end | |||
|description=CAGE_peak_1_at_Cfi_5end | |||
|id=chr3:129539692..129539722,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002107!3.17e-16!22;UBERON:0007499!3.17e-16!22;UBERON:0006925!3.17e-16!22;UBERON:0009497!3.17e-16!22;UBERON:0000015!3.17e-16!22;UBERON:0002423!3.17e-16!22;UBERON:0006235!3.17e-16!22;UBERON:0008835!3.17e-16!22;UBERON:0003894!3.17e-16!22;UBERON:0004161!3.17e-16!22;UBERON:0008836!3.17e-16!22;UBERON:0009854!3.99e-16!23;UBERON:0009856!3.99e-16!23;UBERON:0005172!4.35e-14!49;UBERON:0005173!4.35e-14!49;UBERON:0002417!4.35e-14!49;UBERON:0000916!4.35e-14!49;UBERON:0002365!1.25e-12!25;UBERON:0002330!1.25e-12!25;UBERON:0009569!1.42e-11!66;UBERON:0004119!1.38e-10!130;UBERON:0000925!1.38e-10!130;UBERON:0006595!1.38e-10!130;UBERON:0005177!4.54e-10!85;UBERON:0001007!4.71e-10!128;UBERON:0001555!4.71e-10!128;UBERON:0007026!4.71e-10!128;UBERON:0004921!1.36e-09!126;UBERON:0004185!1.36e-09!126;UBERON:0005409!7.86e-09!59;UBERON:0005256!8.31e-09!47;UBERON:0000466!2.77e-07!79;UBERON:0002100!2.89e-07!98;UBERON:0000160!5.24e-07!43;UBERON:0003914!6.07e-07!47 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,3.31e-18,22;UBERON:0007499,3.31e-18,22;UBERON:0006925,3.31e-18,22;UBERON:0009497,3.31e-18,22;UBERON:0000015,3.31e-18,22;UBERON:0002423,3.31e-18,22;UBERON:0006235,3.31e-18,22;UBERON:0008835,3.31e-18,22;UBERON:0003894,3.31e-18,22;UBERON:0004161,3.31e-18,22;UBERON:0008836,3.31e-18,22;UBERON:0009854,4.29e-18,23;UBERON:0009856,4.29e-18,23;UBERON:0005172,2.14e-15,49;UBERON:0005173,2.14e-15,49;UBERON:0002417,2.14e-15,49;UBERON:0000916,2.14e-15,49;UBERON:0002365,1.19e-14,25;UBERON:0002330,1.19e-14,25;UBERON:0005177,4.41e-12,79;UBERON:0009569,8.17e-11,66;UBERON:0004119,2.35e-09,118;UBERON:0000925,2.35e-09,118;UBERON:0006595,2.35e-09,118;UBERON:0005256,5.85e-09,45;UBERON:0001007,8.12e-09,116;UBERON:0001555,8.12e-09,116;UBERON:0007026,8.12e-09,116;UBERON:0005409,1.07e-08,47;UBERON:0003104,2.05e-08,61;UBERON:0009142,2.05e-08,61;UBERON:0004921,2.37e-08,114;UBERON:0002100,2.37e-08,90 | |||
|phase1_expression=0.320297694209588,2.44282785347553,4.09499315450582,1.51232105653415,2.50447864973174,5.37213670118047,5.60670337429262,0,0,0,0,0,0,0,0,0,0,0,0,0,2.8064285749853,0,0,13.759348360233,8.02932483735095,2.29692785646008,6.03066794622705,6.03319451520489,2.47030445293286,1.51218077855958,2.88249663851896,0,0,0,4.62162591602039,2.49351968037739,3.67504841272264,0,0,0,0,0,0.485510353031154,0,0,0,0,0,0.439372365468944,0.972149495371417,0.139986421625363,0,0,0,0,0,0.286533439938757,0.515672092277442,0,0,0,0,0,0,0,0,0.599200221036809,0.768436610643109,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.075726193333184,0,8.11620568364698,782.12530417608,725.52941306617,814.951819373104,951.272675143388,732.523960404144,194.515521882476,0,0,0,0.563373679106722,0,0,0,0,0,0,315.375875784044,0,4.75014845007439,8.15381035800839,16.1366703505435,32.5167851131042,17.3331036635516,12.4644029563847,4.90099706185734,320.117483216014,0,0,0.161766849947409,0,0,3.72783522436244,0,0,3.57639877292028,0,0,0,0,0,0,0,0,0,0,2.03678727700633,0.373220911830279,1.51633655060205,0,0,0,0,12.3577950625286,0,0,0.0937017245597288,0,0,1.32374256117473,0,0,0,0.348252166522167,0,0.995171334092466,0,0,0,1.44988040774851,3.98694301967864,0.180062061461015,0.710234206755631,1.18058539048442,0.462801338662135,0.232533944750408,0,0,0.16455984991348,0.164167464079095,0,0,0.219550115291051,0.402619256281115,0,0.102904612379284,1.65209391491899,4.23120906661671,3.62590025909898,12.7730169523241,17.0105048945163,30.4542122181247,34.24621875211,53.8338521898542,6.64340686162316,44.798115684931,27.1442025504291,27.4559931416788,22.0309418444606,4.49409704327111,1.51296634912286,1.59313018603494,1.51734320762465,6.740662243974,5.63538678365402,11.6081256871829,19.0073437424273,19.4977579295086,8.72664212314751,2.21415221969403,2.82597710114475,3.08492909804501,1055.37135243025,64.0685205949801,90.2205787569602,128.171404059367,197.382898111013,324.865634186505,475.386465275911,481.027941817755,416.201127131516,729.784236253921,1061.00936417188,1041.62251252414,1162.34033235174,777.43778632121,646.727675746493,903.616715513587,0.184753190166605,5.11626811780309,10.1038285394056,9.16623463186016,7.51008794523207,2.1775813467436,3.33261097240419,0.585400943573396,0.630540576424764,0,0.956728611944923,0.491589944147214,0.172684981865896,0,0,0,0,0,0,0,0,0,0.631016438832513,0,0,0.477937595905104,0.445597348164788,0.283076530788832,2.02405350837447,0,0,0,0.99358059645788,10.3278050127008,1.79175655288934,13.1976098378028,0,12.867373716214,16.6277956330613,47.3398750187304,38.3892460745005,33.5104311258881,27.6518273689997,16.7225515559653,12.1209108650805,1.58018378967908,0,0,0,0,0,0,0,0,0,0,12.2029288193129,21.6068712281097,0,0,0.161464426695906,0,0,0,5.24665505933731,0,0,2.06386867963222,1.11116716421827,0,0,0.228778173206523,0,0,0,70.6456257331184,6.32671987162271,26.0248917922366,49.0344247330978,63.5628419883985,93.0224521558717,100.339073710307,191.012136181251,87.1647286806819,0,0,0,0.149516546043979,0.165458490457098,0,0.387479470433193,0,0.352071715937262,16.5359568751817,0.104859344425711,0,0,0,0.202725215290164,0,0,0,0,0,0,0,0,0.100826185136841,0,0.288635524920988,0,0,0,0,0,0.386379188064381,1.12609485270709,27.4727436400898,0.428736758158132,0,0,0,0,0,0,0,0,0,0,0,0.207574695168353,5.1873233542134,16.561159758151,38.4108612967905,17.6075056607505,25.554247674552,49.116526844157,42.6492568484511,47.4960430195887,47.2543785998301,44.358877480792,37.9138946186013,37.8311690178325,38.8632675097557,39.7453445172844,42.3901385241936,38.5894805396369,42.0542100610877,35.0273015682811,45.4844663215288,50.0589108482706,41.529338641285,49.8331636989901,45.4934284059188,45.9253776426813,43.40729384843,41.8905057878649,43.6695720986819,48.2104604152809,61.1645076106935,37.1327606728665,37.1361898555874,45.0154147486658,43.0724418496985,55.1712907406064,0.249810577937946,48.1899113397541,55.2218608904127,0.765153328275374,10.5883881177367,1.39120701372253 | |||
|short_description=p1@Cfi | |||
}} |
Revision as of 01:30, 14 September 2013
Short description: | p1@Cfi |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Cfi_5end |
Coexpression cluster: | MCL_coexpression_mm9:8 |
Association with transcript: | 35bp_to_NM_007686, uc008rin.1_5end |
EntrezGene: | Cfi |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
liver | 3.31e-18 | 22 |
epithelial sac | 3.31e-18 | 22 |
digestive gland | 3.31e-18 | 22 |
epithelium of foregut-midgut junction | 3.31e-18 | 22 |
anatomical boundary | 3.31e-18 | 22 |
hepatobiliary system | 3.31e-18 | 22 |
foregut-midgut junction | 3.31e-18 | 22 |
hepatic diverticulum | 3.31e-18 | 22 |
liver primordium | 3.31e-18 | 22 |
septum transversum | 3.31e-18 | 22 |
liver bud | 3.31e-18 | 22 |
digestive tract diverticulum | 4.29e-18 | 23 |
sac | 4.29e-18 | 23 |
abdomen element | 2.14e-15 | 49 |
abdominal segment element | 2.14e-15 | 49 |
abdominal segment of trunk | 2.14e-15 | 49 |
abdomen | 2.14e-15 | 49 |
exocrine gland | 1.19e-14 | 25 |
exocrine system | 1.19e-14 | 25 |
trunk region element | 4.41e-12 | 79 |
subdivision of trunk | 8.17e-11 | 66 |
endoderm-derived structure | 2.35e-09 | 118 |
endoderm | 2.35e-09 | 118 |
presumptive endoderm | 2.35e-09 | 118 |
trunk mesenchyme | 5.85e-09 | 45 |
digestive system | 8.12e-09 | 116 |
digestive tract | 8.12e-09 | 116 |
primitive gut | 8.12e-09 | 116 |
gastrointestinal system | 1.07e-08 | 47 |
mesenchyme | 2.05e-08 | 61 |
entire embryonic mesenchyme | 2.05e-08 | 61 |
subdivision of digestive tract | 2.37e-08 | 114 |
trunk | 2.37e-08 | 90 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.