FFCP PHASE1:Mm9::chr4:119330719..119330733,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=58|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr4:119330719..119330733,-|id=chr4:119330719..119330733,-|ontology_enrichment_celltype=CL:0000239!4.67e-18!6;CL:0000677!4.67e-18!6;CL:0000212!4.67e-18!6;CL:0000584!4.67e-18!6;CL:0000075!2.22e-15!7;CL:0002563!8.34e-12!9;CL:0002251!8.34e-12!9;CL:0000473!2.40e-10!3;CL:0000627!2.40e-10!3;CL:0000682!2.40e-10!3;CL:0000066!1.45e-08!25;CL:0002076!8.56e-07!15|ontology_enrichment_celltype_v019_2=CL:0000239,3.93e-31,6;CL:0000677,3.93e-31,6;CL:0000584,3.93e-31,6;CL:0000075,1.19e-26,7;CL:0002563,1.15e-20,9;CL:0002251,1.15e-20,9;CL:0000682,2.76e-17,3;CL:0000066,3.09e-16,25;CL:0002076,2.93e-12,15;CL:0000223,4.30e-09,20;CL:0000473,1.07e-07,7|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000344!5.23e-27!15;UBERON:0001242!1.47e-21!13;UBERON:0000060!1.47e-21!13;UBERON:0001262!1.47e-21!13;UBERON:0004786!1.47e-21!13;UBERON:0004923!1.83e-21!24;UBERON:0000160!4.92e-18!43;UBERON:0005409!4.51e-12!59;UBERON:0003350!8.34e-12!9;UBERON:0004808!8.34e-12!9;UBERON:0001277!8.34e-12!9;UBERON:0000485!1.58e-09!11;UBERON:0000331!1.58e-09!3;UBERON:0002116!1.58e-09!3;UBERON:0001204!1.58e-09!3;UBERON:0001168!1.58e-09!3;UBERON:0001962!2.74e-07!2;UBERON:0001961!2.74e-07!2;UBERON:0001744!2.74e-07!2|ontology_enrichment_uberon_v019_2=UBERON:0000344,3.40e-48,15;UBERON:0001242,2.50e-38,13;UBERON:0001262,2.50e-38,13;UBERON:0004786,2.50e-38,13;UBERON:0004923,1.44e-29,24;UBERON:0000160,3.51e-22,31;UBERON:0003350,1.15e-20,9;UBERON:0004808,1.15e-20,9;UBERON:0001277,1.15e-20,9;UBERON:0000485,7.53e-17,11;UBERON:0000331,8.08e-16,3;UBERON:0002116,8.08e-16,3;UBERON:0001204,8.08e-16,3;UBERON:0001168,8.08e-16,3;UBERON:0005409,4.43e-14,47;UBERON:0002108,5.16e-12,4;UBERON:0001962,8.05e-12,2;UBERON:0001961,8.05e-12,2;UBERON:0001744,8.05e-12,2;UBERON:0002465,3.63e-08,3;UBERON:0001007,8.66e-07,116;UBERON:0001555,8.66e-07,116;UBERON:0007026,8.66e-07,116;UBERON:0003199,9.48e-07,1|phase1_expression=0,10.8182376368202,6.3699893514535,2.41971369045464,2.50447864973174,3.3575854382378,3.50418960893289,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,6.55968933452967,6.8822784320151,9.18771142584032,8.61523992318149,8.83432054012145,3.04037471130198,2.26827116783938,2.88249663851896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280888840263504,0,0,0,0,0,0,0,0,0,0,0.68510327831436,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53274233125155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.31293148088659,2.64450566663544,0,0,0,0,0,0,0.949058123089023,0,0,0.596869416123452,0.38992817423824,0,0.216138049874694,0.796565093017469,0,0,0,0,0,0,0,0.147610147979602,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164970122972535,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23467170806371,0.21183207086382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93841237725591,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr4:119330719..119330733,-}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=58 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr4:119330719..119330733,- | |||
|id=chr4:119330719..119330733,- | |||
|ontology_enrichment_celltype=CL:0000239!4.67e-18!6;CL:0000677!4.67e-18!6;CL:0000212!4.67e-18!6;CL:0000584!4.67e-18!6;CL:0000075!2.22e-15!7;CL:0002563!8.34e-12!9;CL:0002251!8.34e-12!9;CL:0000473!2.40e-10!3;CL:0000627!2.40e-10!3;CL:0000682!2.40e-10!3;CL:0000066!1.45e-08!25;CL:0002076!8.56e-07!15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,3.93e-31,6;CL:0000677,3.93e-31,6;CL:0000584,3.93e-31,6;CL:0000075,1.19e-26,7;CL:0002563,1.15e-20,9;CL:0002251,1.15e-20,9;CL:0000682,2.76e-17,3;CL:0000066,3.09e-16,25;CL:0002076,2.93e-12,15;CL:0000223,4.30e-09,20;CL:0000473,1.07e-07,7 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!5.23e-27!15;UBERON:0001242!1.47e-21!13;UBERON:0000060!1.47e-21!13;UBERON:0001262!1.47e-21!13;UBERON:0004786!1.47e-21!13;UBERON:0004923!1.83e-21!24;UBERON:0000160!4.92e-18!43;UBERON:0005409!4.51e-12!59;UBERON:0003350!8.34e-12!9;UBERON:0004808!8.34e-12!9;UBERON:0001277!8.34e-12!9;UBERON:0000485!1.58e-09!11;UBERON:0000331!1.58e-09!3;UBERON:0002116!1.58e-09!3;UBERON:0001204!1.58e-09!3;UBERON:0001168!1.58e-09!3;UBERON:0001962!2.74e-07!2;UBERON:0001961!2.74e-07!2;UBERON:0001744!2.74e-07!2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,3.40e-48,15;UBERON:0001242,2.50e-38,13;UBERON:0001262,2.50e-38,13;UBERON:0004786,2.50e-38,13;UBERON:0004923,1.44e-29,24;UBERON:0000160,3.51e-22,31;UBERON:0003350,1.15e-20,9;UBERON:0004808,1.15e-20,9;UBERON:0001277,1.15e-20,9;UBERON:0000485,7.53e-17,11;UBERON:0000331,8.08e-16,3;UBERON:0002116,8.08e-16,3;UBERON:0001204,8.08e-16,3;UBERON:0001168,8.08e-16,3;UBERON:0005409,4.43e-14,47;UBERON:0002108,5.16e-12,4;UBERON:0001962,8.05e-12,2;UBERON:0001961,8.05e-12,2;UBERON:0001744,8.05e-12,2;UBERON:0002465,3.63e-08,3;UBERON:0001007,8.66e-07,116;UBERON:0001555,8.66e-07,116;UBERON:0007026,8.66e-07,116;UBERON:0003199,9.48e-07,1 | |||
|phase1_expression=0,10.8182376368202,6.3699893514535,2.41971369045464,2.50447864973174,3.3575854382378,3.50418960893289,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,6.55968933452967,6.8822784320151,9.18771142584032,8.61523992318149,8.83432054012145,3.04037471130198,2.26827116783938,2.88249663851896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280888840263504,0,0,0,0,0,0,0,0,0,0,0.68510327831436,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53274233125155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.31293148088659,2.64450566663544,0,0,0,0,0,0,0.949058123089023,0,0,0.596869416123452,0.38992817423824,0,0.216138049874694,0.796565093017469,0,0,0,0,0,0,0,0.147610147979602,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164970122972535,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23467170806371,0.21183207086382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93841237725591,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr4:119330719..119330733,- | |||
}} |
Revision as of 03:38, 14 September 2013
Short description: | p@chr4:119330719..119330733, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr4:119330719..119330733, - |
Coexpression cluster: | MCL_coexpression_mm9:58 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 3.93e-31 | 6 |
gut absorptive cell | 3.93e-31 | 6 |
enterocyte | 3.93e-31 | 6 |
columnar/cuboidal epithelial cell | 1.19e-26 | 7 |
intestinal epithelial cell | 1.15e-20 | 9 |
epithelial cell of alimentary canal | 1.15e-20 | 9 |
M cell of gut | 2.76e-17 | 3 |
epithelial cell | 3.09e-16 | 25 |
endo-epithelial cell | 2.93e-12 | 15 |
endodermal cell | 4.30e-09 | 20 |
defensive cell | 1.07e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
mucosa | 3.40e-48 | 15 |
intestinal mucosa | 2.50e-38 | 13 |
wall of intestine | 2.50e-38 | 13 |
gastrointestinal system mucosa | 2.50e-38 | 13 |
organ component layer | 1.44e-29 | 24 |
intestine | 3.51e-22 | 31 |
epithelium of mucosa | 1.15e-20 | 9 |
gastrointestinal system epithelium | 1.15e-20 | 9 |
intestinal epithelium | 1.15e-20 | 9 |
simple columnar epithelium | 7.53e-17 | 11 |
ileal mucosa | 8.08e-16 | 3 |
ileum | 8.08e-16 | 3 |
mucosa of small intestine | 8.08e-16 | 3 |
wall of small intestine | 8.08e-16 | 3 |
gastrointestinal system | 4.43e-14 | 47 |
small intestine | 5.16e-12 | 4 |
gut-associated lymphoid tissue | 8.05e-12 | 2 |
mucosa-associated lymphoid tissue | 8.05e-12 | 2 |
lymphoid tissue | 8.05e-12 | 2 |
lymphoid system | 3.63e-08 | 3 |
digestive system | 8.66e-07 | 116 |
digestive tract | 8.66e-07 | 116 |
primitive gut | 8.66e-07 | 116 |
egg chamber | 9.48e-07 | 1 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.