FFCP PHASE1:Mm9::chr4:137280361..137280390,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=110351|HGNC=|MCL_coexpression_id=201|UniProt=|association_with_transcript=457bp_to_ENSMUST00000148054_5end|description=CAGE_peak_4_at_Rap1gap_5end|id=chr4:137280361..137280390,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003914!7.69e-15!47;UBERON:0005172!5.13e-11!49;UBERON:0005173!5.13e-11!49;UBERON:0002417!5.13e-11!49;UBERON:0000916!5.13e-11!49;UBERON:0002107!5.76e-11!22;UBERON:0007499!5.76e-11!22;UBERON:0006925!5.76e-11!22;UBERON:0009497!5.76e-11!22;UBERON:0000015!5.76e-11!22;UBERON:0002423!5.76e-11!22;UBERON:0006235!5.76e-11!22;UBERON:0008835!5.76e-11!22;UBERON:0003894!5.76e-11!22;UBERON:0004161!5.76e-11!22;UBERON:0008836!5.76e-11!22;UBERON:0002365!5.49e-10!25;UBERON:0002330!5.49e-10!25;UBERON:0009854!5.54e-10!23;UBERON:0009856!5.54e-10!23;UBERON:0007100!2.86e-08!18;UBERON:0000948!2.86e-08!18;UBERON:0005498!2.86e-08!18;UBERON:0004140!2.86e-08!18;UBERON:0009881!2.86e-08!18;UBERON:0004141!2.86e-08!18;UBERON:0003084!2.86e-08!18;UBERON:0007005!2.86e-08!18;UBERON:0004139!2.86e-08!18;UBERON:0004291!2.86e-08!18;UBERON:0009569!5.49e-08!66;UBERON:0000926!9.70e-08!193;UBERON:0004120!9.70e-08!193;UBERON:0006603!9.70e-08!193|ontology_enrichment_uberon_v019_2=UBERON:0003914,1.95e-21,47;UBERON:0002107,1.93e-13,22;UBERON:0007499,1.93e-13,22;UBERON:0006925,1.93e-13,22;UBERON:0009497,1.93e-13,22;UBERON:0000015,1.93e-13,22;UBERON:0002423,1.93e-13,22;UBERON:0006235,1.93e-13,22;UBERON:0008835,1.93e-13,22;UBERON:0003894,1.93e-13,22;UBERON:0004161,1.93e-13,22;UBERON:0008836,1.93e-13,22;UBERON:0009854,1.49e-12,23;UBERON:0009856,1.49e-12,23;UBERON:0007100,1.71e-11,18;UBERON:0000948,1.71e-11,18;UBERON:0005498,1.71e-11,18;UBERON:0004140,1.71e-11,18;UBERON:0009881,1.71e-11,18;UBERON:0004141,1.71e-11,18;UBERON:0003084,1.71e-11,18;UBERON:0007005,1.71e-11,18;UBERON:0004139,1.71e-11,18;UBERON:0004291,1.71e-11,18;UBERON:0002365,5.34e-11,25;UBERON:0002330,5.34e-11,25;UBERON:0004535,2.65e-09,23;UBERON:0001009,2.65e-09,23;UBERON:0005172,7.80e-09,49;UBERON:0005173,7.80e-09,49;UBERON:0002417,7.80e-09,49;UBERON:0000916,7.80e-09,49;UBERON:0003104,1.76e-07,61;UBERON:0009142,1.76e-07,61|phase1_expression=0,0,0,0,0,0,0,0.129123323441576,0,0,0,0.0797721589953364,0,0,0.666219523631325,1.21485160433896,0,1.10411757875383,0.548457734422955,1.69755860719212,1.9559956734746,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219686182734472,0.194429899074283,0,0,1.00669563634642,0.725362142011344,0,0,0.286533439938757,0,0,0,0,0,0,2.2497492932035,1.97773272513395,2.8419204597844,1.19840044207362,0.384218305321555,0,0,0,0,0,0,0.0958454710182364,0,0,0,0,0,0,0,0,0,0,0.294628585473668,0.142371680799103,0,0,0.0755715601067855,0.289864488701678,6.0229671388697,3.39985666853875,5.39703191637817,8.4470934268197,16.1289679355041,8.70755404816862,0,0,0,0,0,0,0,0,0,0,7.76450382089608,1.29468941823586,1.33597925158342,0.173485326766136,0.608930956624282,0.230615497256059,0.301445281105245,0.352766121407114,4.14699751387929,0,24.581890676385,3.5384422077995,1.13236794963186,4.63767188766826,2.90925151881133,0,0,0.41889341362691,0.255457055208591,0.958520996047362,0.599902730993408,0.254140454146129,0,0,0.251308704225729,0.173824320192276,0,0.20778804455956,0,0,1.11966273549084,0,2.10441855886474,0.130120442962704,0,0,0,0,0,0,1.29351685369508,0,0,0.175951124163949,0.219195732427575,0,0.348252166522167,0,0.398068533636986,2.1066395619397,0.772043721344145,1.42081749697796,2.27838349789052,2.81431271977315,3.06105504483725,3.07768156260773,7.08351234290654,6.17068451549513,10.9290954032692,10.9992094573844,5.13767506415546,16.785104691175,15.7600765515931,17.9162069096341,18.4211984155919,28.9806152184187,22.8150911892632,0,0,0.330418782983798,0,0,0.232236671860439,0.38660238396628,0,0.444756087689741,0.190225626112559,0,0,0.251335208800269,0.397912944082302,0.38992817423824,0.898819408654221,0.432276099749388,0,0.189667900953082,0.342745537829186,1.1270773567308,1.4255592949172,0,0.701358198903186,1.3279672796094,4.72352473534727,5.33795674660674,5.30607804863742,4.74324203339438,0.667380422864376,1.37591296579242,1.12431056192427,1.01430060694251,2.894125917029,2.29163266603278,2.30156909960649,8.10676133875177,2.74561413188081,7.18841032636773,4.09355042435354,2.80833905803104,3.78868316920668,6.45830688678884,6.27176577772377,1.10851914099963,0.189491411770485,0.162964976442026,0,0,0.335012514883631,0,0,0.315270288212382,0.44292937929755,0.637819074629948,0.81931657357869,1.72684981865896,0.144649058581512,0,0.54390568381871,0.491764273019036,0,0,0,0,4.54447668967871,0,0.390438744296638,0,0,0,0,0,0,0,0,0.283880170416537,0.35613120733451,0.162886959353576,0.824850614862677,0,0,0,0,0,0,0.516856586336442,0.363533729477506,0,0.316036757935816,0,0,0,1.08036656418786,0,0,0,0,0,0,0.23467170806371,0.63549621259146,0,1.6488625294148,0.161464426695906,0.301564624640779,0.358117032009409,0,0,0.370850604021019,0.854354403989263,0.206386867963223,0.740778109478847,0.753473828018764,0.546776910884101,1.83022538565218,0.169978429993855,1.25956307091292,2.21119958087078,2.86401185404534,0.158167996790568,0.203319467126849,0,0.209088296014469,0.218362563746178,0.269728692769641,0.661227645802687,0.523511883968059,0.388844919875379,0.621339313086926,0,0,0,0.194451188344048,0,0.168956125490778,0,0.2604087696879,0,0,0.576060012515731,0.948033361884535,0.202725215290164,0.102710957164827,0.129920822977795,0,0.198681354781265,0,0,0.100966449948148,0.0762068066549998,0.100826185136841,0.194915761479505,0.288635524920988,0.116876902181569,15.6443964694496,0,0,0,0.386379188064381,0.93841237725591,1.09890974560359,0.214368379079066,0,0,0,0,0,0,0,0,0.45032120322422,0,0,0.103787347584177,0.399024873401031,0,0,0.209613162627982,1.47074806760011,1.55572709461131,1.64828045791115,3.53011130550997,5.30664144703975,2.28131369901216,3.01802146217722,2.99652823903624,2.30490548657529,2.01024141344646,1.42888107384922,1.39061191133827,2.89363830695558,2.06042950401653,2.06078488188156,2.05721551431249,3.54951612318675,2.62279808942053,2.0348498328526,2.82328141245992,3.13074049199203,2.19513567447327,1.8414879800649,2.58027816307137,3.36685362994643,1.06771516311757,2.85662998889134,2.04615521584845,2.01417893541756,1.73615949883027,0.499621155875892,1.63752125911786,0.644613162144895,1.14772999241306,1.98532277207564,4.86922454802885|short_description=p4@Rap1gap}} | ||
|EntrezGene=110351 | |||
|HGNC= | |||
|MCL_coexpression_id=201 | |||
|UniProt= | |||
|association_with_transcript=457bp_to_ENSMUST00000148054_5end | |||
|description=CAGE_peak_4_at_Rap1gap_5end | |||
|id=chr4:137280361..137280390,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003914!7.69e-15!47;UBERON:0005172!5.13e-11!49;UBERON:0005173!5.13e-11!49;UBERON:0002417!5.13e-11!49;UBERON:0000916!5.13e-11!49;UBERON:0002107!5.76e-11!22;UBERON:0007499!5.76e-11!22;UBERON:0006925!5.76e-11!22;UBERON:0009497!5.76e-11!22;UBERON:0000015!5.76e-11!22;UBERON:0002423!5.76e-11!22;UBERON:0006235!5.76e-11!22;UBERON:0008835!5.76e-11!22;UBERON:0003894!5.76e-11!22;UBERON:0004161!5.76e-11!22;UBERON:0008836!5.76e-11!22;UBERON:0002365!5.49e-10!25;UBERON:0002330!5.49e-10!25;UBERON:0009854!5.54e-10!23;UBERON:0009856!5.54e-10!23;UBERON:0007100!2.86e-08!18;UBERON:0000948!2.86e-08!18;UBERON:0005498!2.86e-08!18;UBERON:0004140!2.86e-08!18;UBERON:0009881!2.86e-08!18;UBERON:0004141!2.86e-08!18;UBERON:0003084!2.86e-08!18;UBERON:0007005!2.86e-08!18;UBERON:0004139!2.86e-08!18;UBERON:0004291!2.86e-08!18;UBERON:0009569!5.49e-08!66;UBERON:0000926!9.70e-08!193;UBERON:0004120!9.70e-08!193;UBERON:0006603!9.70e-08!193 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003914,1.95e-21,47;UBERON:0002107,1.93e-13,22;UBERON:0007499,1.93e-13,22;UBERON:0006925,1.93e-13,22;UBERON:0009497,1.93e-13,22;UBERON:0000015,1.93e-13,22;UBERON:0002423,1.93e-13,22;UBERON:0006235,1.93e-13,22;UBERON:0008835,1.93e-13,22;UBERON:0003894,1.93e-13,22;UBERON:0004161,1.93e-13,22;UBERON:0008836,1.93e-13,22;UBERON:0009854,1.49e-12,23;UBERON:0009856,1.49e-12,23;UBERON:0007100,1.71e-11,18;UBERON:0000948,1.71e-11,18;UBERON:0005498,1.71e-11,18;UBERON:0004140,1.71e-11,18;UBERON:0009881,1.71e-11,18;UBERON:0004141,1.71e-11,18;UBERON:0003084,1.71e-11,18;UBERON:0007005,1.71e-11,18;UBERON:0004139,1.71e-11,18;UBERON:0004291,1.71e-11,18;UBERON:0002365,5.34e-11,25;UBERON:0002330,5.34e-11,25;UBERON:0004535,2.65e-09,23;UBERON:0001009,2.65e-09,23;UBERON:0005172,7.80e-09,49;UBERON:0005173,7.80e-09,49;UBERON:0002417,7.80e-09,49;UBERON:0000916,7.80e-09,49;UBERON:0003104,1.76e-07,61;UBERON:0009142,1.76e-07,61 | |||
|phase1_expression=0,0,0,0,0,0,0,0.129123323441576,0,0,0,0.0797721589953364,0,0,0.666219523631325,1.21485160433896,0,1.10411757875383,0.548457734422955,1.69755860719212,1.9559956734746,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219686182734472,0.194429899074283,0,0,1.00669563634642,0.725362142011344,0,0,0.286533439938757,0,0,0,0,0,0,2.2497492932035,1.97773272513395,2.8419204597844,1.19840044207362,0.384218305321555,0,0,0,0,0,0,0.0958454710182364,0,0,0,0,0,0,0,0,0,0,0.294628585473668,0.142371680799103,0,0,0.0755715601067855,0.289864488701678,6.0229671388697,3.39985666853875,5.39703191637817,8.4470934268197,16.1289679355041,8.70755404816862,0,0,0,0,0,0,0,0,0,0,7.76450382089608,1.29468941823586,1.33597925158342,0.173485326766136,0.608930956624282,0.230615497256059,0.301445281105245,0.352766121407114,4.14699751387929,0,24.581890676385,3.5384422077995,1.13236794963186,4.63767188766826,2.90925151881133,0,0,0.41889341362691,0.255457055208591,0.958520996047362,0.599902730993408,0.254140454146129,0,0,0.251308704225729,0.173824320192276,0,0.20778804455956,0,0,1.11966273549084,0,2.10441855886474,0.130120442962704,0,0,0,0,0,0,1.29351685369508,0,0,0.175951124163949,0.219195732427575,0,0.348252166522167,0,0.398068533636986,2.1066395619397,0.772043721344145,1.42081749697796,2.27838349789052,2.81431271977315,3.06105504483725,3.07768156260773,7.08351234290654,6.17068451549513,10.9290954032692,10.9992094573844,5.13767506415546,16.785104691175,15.7600765515931,17.9162069096341,18.4211984155919,28.9806152184187,22.8150911892632,0,0,0.330418782983798,0,0,0.232236671860439,0.38660238396628,0,0.444756087689741,0.190225626112559,0,0,0.251335208800269,0.397912944082302,0.38992817423824,0.898819408654221,0.432276099749388,0,0.189667900953082,0.342745537829186,1.1270773567308,1.4255592949172,0,0.701358198903186,1.3279672796094,4.72352473534727,5.33795674660674,5.30607804863742,4.74324203339438,0.667380422864376,1.37591296579242,1.12431056192427,1.01430060694251,2.894125917029,2.29163266603278,2.30156909960649,8.10676133875177,2.74561413188081,7.18841032636773,4.09355042435354,2.80833905803104,3.78868316920668,6.45830688678884,6.27176577772377,1.10851914099963,0.189491411770485,0.162964976442026,0,0,0.335012514883631,0,0,0.315270288212382,0.44292937929755,0.637819074629948,0.81931657357869,1.72684981865896,0.144649058581512,0,0.54390568381871,0.491764273019036,0,0,0,0,4.54447668967871,0,0.390438744296638,0,0,0,0,0,0,0,0,0.283880170416537,0.35613120733451,0.162886959353576,0.824850614862677,0,0,0,0,0,0,0.516856586336442,0.363533729477506,0,0.316036757935816,0,0,0,1.08036656418786,0,0,0,0,0,0,0.23467170806371,0.63549621259146,0,1.6488625294148,0.161464426695906,0.301564624640779,0.358117032009409,0,0,0.370850604021019,0.854354403989263,0.206386867963223,0.740778109478847,0.753473828018764,0.546776910884101,1.83022538565218,0.169978429993855,1.25956307091292,2.21119958087078,2.86401185404534,0.158167996790568,0.203319467126849,0,0.209088296014469,0.218362563746178,0.269728692769641,0.661227645802687,0.523511883968059,0.388844919875379,0.621339313086926,0,0,0,0.194451188344048,0,0.168956125490778,0,0.2604087696879,0,0,0.576060012515731,0.948033361884535,0.202725215290164,0.102710957164827,0.129920822977795,0,0.198681354781265,0,0,0.100966449948148,0.0762068066549998,0.100826185136841,0.194915761479505,0.288635524920988,0.116876902181569,15.6443964694496,0,0,0,0.386379188064381,0.93841237725591,1.09890974560359,0.214368379079066,0,0,0,0,0,0,0,0,0.45032120322422,0,0,0.103787347584177,0.399024873401031,0,0,0.209613162627982,1.47074806760011,1.55572709461131,1.64828045791115,3.53011130550997,5.30664144703975,2.28131369901216,3.01802146217722,2.99652823903624,2.30490548657529,2.01024141344646,1.42888107384922,1.39061191133827,2.89363830695558,2.06042950401653,2.06078488188156,2.05721551431249,3.54951612318675,2.62279808942053,2.0348498328526,2.82328141245992,3.13074049199203,2.19513567447327,1.8414879800649,2.58027816307137,3.36685362994643,1.06771516311757,2.85662998889134,2.04615521584845,2.01417893541756,1.73615949883027,0.499621155875892,1.63752125911786,0.644613162144895,1.14772999241306,1.98532277207564,4.86922454802885 | |||
|short_description=p4@Rap1gap | |||
}} |
Revision as of 04:11, 14 September 2013
Short description: | p4@Rap1gap |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Rap1gap_5end |
Coexpression cluster: | MCL_coexpression_mm9:201 |
Association with transcript: | 457bp_to_ENSMUST00000148054_5end |
EntrezGene: | Rap1gap |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial tube | 1.95e-21 | 47 |
liver | 1.93e-13 | 22 |
epithelial sac | 1.93e-13 | 22 |
digestive gland | 1.93e-13 | 22 |
epithelium of foregut-midgut junction | 1.93e-13 | 22 |
anatomical boundary | 1.93e-13 | 22 |
hepatobiliary system | 1.93e-13 | 22 |
foregut-midgut junction | 1.93e-13 | 22 |
hepatic diverticulum | 1.93e-13 | 22 |
liver primordium | 1.93e-13 | 22 |
septum transversum | 1.93e-13 | 22 |
liver bud | 1.93e-13 | 22 |
digestive tract diverticulum | 1.49e-12 | 23 |
sac | 1.49e-12 | 23 |
primary circulatory organ | 1.71e-11 | 18 |
heart | 1.71e-11 | 18 |
primitive heart tube | 1.71e-11 | 18 |
primary heart field | 1.71e-11 | 18 |
anterior lateral plate mesoderm | 1.71e-11 | 18 |
heart tube | 1.71e-11 | 18 |
heart primordium | 1.71e-11 | 18 |
cardiac mesoderm | 1.71e-11 | 18 |
cardiogenic plate | 1.71e-11 | 18 |
heart rudiment | 1.71e-11 | 18 |
exocrine gland | 5.34e-11 | 25 |
exocrine system | 5.34e-11 | 25 |
cardiovascular system | 2.65e-09 | 23 |
circulatory system | 2.65e-09 | 23 |
abdomen element | 7.80e-09 | 49 |
abdominal segment element | 7.80e-09 | 49 |
abdominal segment of trunk | 7.80e-09 | 49 |
abdomen | 7.80e-09 | 49 |
mesenchyme | 1.76e-07 | 61 |
entire embryonic mesenchyme | 1.76e-07 | 61 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.