Personal tools

FFCP PHASE1:Mm9::chr4:140616451..140616482,-: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{FFCP
{{FFCP|EntrezGene=230872|HGNC=|UniProt=A2AA80,Q8CJ40,B7ZC90|association_with_transcript=0bp_to_ENSMUST00000097816,ENSMUST00000144196,NM_001145958,uc012dnz.1_5end|description=CAGE_peak_1_at_Crocc_5end|id=chr4:140616451..140616482,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003056!5.13e-09!49;UBERON:0000153!2.21e-08!94;UBERON:0000033!1.78e-07!63|ontology_enrichment_uberon_v019_2=UBERON:0003056,3.12e-09,49;UBERON:0000955,5.05e-07,47;UBERON:0006238,5.05e-07,47;UBERON:0002346,9.85e-07,64;UBERON:0003075,9.85e-07,64;UBERON:0007284,9.85e-07,64|phase1_expression=1.44133962394315,0,0,0.90739263392049,0,0.671517087647559,0,1.16210991097419,0.563154888606667,0.234064526321993,0.171217968225505,0.398860794976682,1.36960583944965,1.39872643870396,0,0.202475267389826,0,2.05050407482854,1.37114433605739,2.12194825899015,1.61582251287033,1.09220046320974,2.08959831311148,0.159992422793407,0.45881856213434,0,0.430761996159075,0.430942465371778,0.380046838912748,0.252030129759931,0,1.90509202037889,2.46025915033828,0,0.866554859253824,0.332469290716985,0.612508068787107,0.837063261473815,1.5626706890476,0,0.588231488031014,0,0,0.377690453926732,0.506884656097573,0.183546752161682,0,0.872100625521786,0.219686182734472,0.58328969722285,0.839918529752175,0,1.51004345451963,0.725362142011344,1.68046899571232,0,0.286533439938757,0.515672092277442,1.01158230429799,0.528990979272033,1.26766280701236,0.338844532069132,0,0,0,0.7104801149461,0.898800331555214,1.92109152660777,2.17748185847803,1.08004750665353,1.26194976810829,0.571301968807607,0.441737081903227,1.71487118900936,1.91690942036473,1.83843757322004,0,1.0214987046815,0.768032666281217,1.84640802822271,1.09785172322892,1.04182674111352,0.837548997004143,0,1.06958773443767,0.294628585473668,0.427115042397309,0.372798891650601,0.151452386666368,0.0755715601067855,1.15945795480671,0,0,0,0,0,0.421333260395256,0.340860645156116,0.779358013808606,0.70667914902068,0.422530259330042,2.56652954828636,2.54805239706646,0,0,0,1.01104889002957,0.5709193985953,0.258937883647172,0.742210695324124,2.08182392119363,0.608930956624282,2.30615497256059,0.753613202763113,0.823120949949934,1.0053327306374,0.988779870937496,0.289198713839823,1.76922110389975,1.7794353494215,1.10420759230197,0.484875253135222,0,5.85561594023094,3.56059401582874,0.255457055208591,0.479260498023681,2.39961092397363,0.508280908292259,5.39246301857362,6.8625090422794,2.89005009859588,3.47648640384553,2.55715457330331,3.53239675751252,4.2182728397617,4.48093200941392,1.24406970610093,2.27450482590307,0.841767423545896,5.98554037628437,5.51765050640335,4.50155324513373,5.42537344208574,7.62008790494872,4.48398020996974,5.43470002446427,3.62184719034622,5.82033580918674,7.18603104637713,5.63043597324636,3.28793598641362,3.61461423993277,2.78601733217733,3.08673204611915,4.37875387000685,1.40442637462647,0.772043721344145,1.42081749697796,3.72826390563903,2.11073453982987,1.80062061461015,2.3674473558521,2.95146347621106,2.1597395804233,2.55787339225449,1.60964040839772,1.5179494507732,1.97471819896177,1.14917224855367,1.37816976227955,0.146199987425332,0.439100230582101,1.07365135008297,2.73376933133365,2.36680608472354,0,0.264450566663544,4.05247676016945,4.18026009348789,2.19074684247559,1.61346819698674,2.44615848229357,0.951128130562796,0,0.823494773620054,1.50801125280162,0.994782360205754,1.16978452271472,0.898819408654221,0.432276099749388,0.199141273254367,4.1726938209678,5.02693455482807,9.01661885384643,3.05476991767971,4.26695471768777,5.54072977133517,1.58091342810643,1.47610147979602,1.56998727841375,0.863780147452604,0,1.66845105716094,0.786235980452812,1.57403478669398,0.811440485554012,0.482354319504834,0.50925170356284,1.43848068725405,0.324270453550071,0.549122826376163,1.43768206527355,0.372140947668503,0.936113019343682,1.01031551178845,0.358794827043824,0,1.10851914099963,4.35830247072115,3.91115943460862,2.8856664581782,2.81628297946203,3.51763140627813,3.33261097240419,1.36593553500459,4.09851374676097,5.3151525515706,2.71073106717728,1.3109065177259,1.55416483679306,1.59113964439663,1.50791283939272,0,1.96705709207614,1.65562047782839,2.88991061978026,4.57125577709592,0,0.504941854408746,0.94652465824877,0,1.29254038639679,1.19484398976276,0.668396022247182,0,0.809621403349789,0.292255857911312,0.790575555893047,4.81981974632711,1.98716119291576,5.52003371368491,4.39794790254655,3.29940245945071,2.65490276679926,2.6705869977048,4.23252979750651,0.377210159511796,1.47650946440386,1.53717573971964,1.29214146584111,1.45413491791002,2.49548164869305,0.632073515871632,0,2.06271086496374,3.74483566329167,5.58189391497062,3.75140182969988,5.5727629108214,3.54680467284547,3.56737635204141,1.97458824722545,1.522324745573,3.05073220482823,1.0591603543191,0.441056796109924,0.98931751764888,1.29171541356724,2.41251699712623,1.79058516004705,0.984845398470368,0.874442509889552,3.52308073819968,1.02522528478712,4.74689796315412,2.03713980106683,1.13021074202815,0.683471138605126,1.14389086603261,0.509935289981566,0.69975726161829,0.967399816630967,0.954670618015114,3.79603192297362,3.45643094115643,2.05210147561422,2.92723614420256,1.52853794622324,1.75323650300267,1.1571483801547,0.523511883968059,0.518459893167171,0,0,5.68162874967119,4.63283773279873,4.66682852025714,2.71235629303235,3.8859908862879,3.63807439801837,4.4269490846943,5.13810787685983,1.44950472495604,1.15212002503146,0,2.63542779877213,1.54066435747241,2.07873316764472,1.43221356533985,2.58285761215644,2.04332264183947,1.9199638532695,2.62512769865184,3.20068587950999,2.21817607301049,0.877120926657772,1.92423683280659,2.45441494581295,1.36038230169127,0.887943813496259,0.62799699626633,0.839423081820392,1.73870634628971,1.87682475451182,2.19781949120718,0.857473516316263,0.501572104035363,1.12950368523413,4.60325236507177,1.71868654031819,2.57779773515531,2.74033007908257,6.7985450765073,6.07520250208625,4.5032120322422,2.71885445390523,5.1776031175182,2.59468368960442,5.1873233542134,6.4878770186571,2.43106717068294,1.46729213839588,1.47074806760011,1.11123363900808,2.26638562962784,2.24643446714271,2.52697211763797,2.78827229879264,2.26351609663291,1.21733959710847,2.43295579138503,1.43588672389033,2.85776214769844,1.85414921511769,1.73618298417335,0.412085900803307,1.76638704161277,0,1.4198064492747,1.66905332963125,1.16277133305863,2.72917203204459,1.60767754994185,2.74391959309159,1.8414879800649,1.22223702461276,2.24456908663095,3.08451047122853,3.34915240076916,2.45538625901814,1.85924209423159,3.2794123866794,1.74867404556562,1.87145286756327,2.14871054048298,2.29545998482612,0.661774257358546,1.15933917810211|short_description=p1@Crocc}}
|EntrezGene=230872
|HGNC=
|UniProt=A2AA80,Q8CJ40,B7ZC90
|association_with_transcript=0bp_to_ENSMUST00000097816,ENSMUST00000144196,NM_001145958,uc012dnz.1_5end
|description=CAGE_peak_1_at_Crocc_5end
|id=chr4:140616451..140616482,-
|ontology_enrichment_celltype=
|ontology_enrichment_celltype_v019_2=
|ontology_enrichment_disease=
|ontology_enrichment_disease_v019_2=
|ontology_enrichment_uberon=UBERON:0003056!5.13e-09!49;UBERON:0000153!2.21e-08!94;UBERON:0000033!1.78e-07!63
|ontology_enrichment_uberon_v019_2=UBERON:0003056,3.12e-09,49;UBERON:0000955,5.05e-07,47;UBERON:0006238,5.05e-07,47;UBERON:0002346,9.85e-07,64;UBERON:0003075,9.85e-07,64;UBERON:0007284,9.85e-07,64
|phase1_expression=1.44133962394315,0,0,0.90739263392049,0,0.671517087647559,0,1.16210991097419,0.563154888606667,0.234064526321993,0.171217968225505,0.398860794976682,1.36960583944965,1.39872643870396,0,0.202475267389826,0,2.05050407482854,1.37114433605739,2.12194825899015,1.61582251287033,1.09220046320974,2.08959831311148,0.159992422793407,0.45881856213434,0,0.430761996159075,0.430942465371778,0.380046838912748,0.252030129759931,0,1.90509202037889,2.46025915033828,0,0.866554859253824,0.332469290716985,0.612508068787107,0.837063261473815,1.5626706890476,0,0.588231488031014,0,0,0.377690453926732,0.506884656097573,0.183546752161682,0,0.872100625521786,0.219686182734472,0.58328969722285,0.839918529752175,0,1.51004345451963,0.725362142011344,1.68046899571232,0,0.286533439938757,0.515672092277442,1.01158230429799,0.528990979272033,1.26766280701236,0.338844532069132,0,0,0,0.7104801149461,0.898800331555214,1.92109152660777,2.17748185847803,1.08004750665353,1.26194976810829,0.571301968807607,0.441737081903227,1.71487118900936,1.91690942036473,1.83843757322004,0,1.0214987046815,0.768032666281217,1.84640802822271,1.09785172322892,1.04182674111352,0.837548997004143,0,1.06958773443767,0.294628585473668,0.427115042397309,0.372798891650601,0.151452386666368,0.0755715601067855,1.15945795480671,0,0,0,0,0,0.421333260395256,0.340860645156116,0.779358013808606,0.70667914902068,0.422530259330042,2.56652954828636,2.54805239706646,0,0,0,1.01104889002957,0.5709193985953,0.258937883647172,0.742210695324124,2.08182392119363,0.608930956624282,2.30615497256059,0.753613202763113,0.823120949949934,1.0053327306374,0.988779870937496,0.289198713839823,1.76922110389975,1.7794353494215,1.10420759230197,0.484875253135222,0,5.85561594023094,3.56059401582874,0.255457055208591,0.479260498023681,2.39961092397363,0.508280908292259,5.39246301857362,6.8625090422794,2.89005009859588,3.47648640384553,2.55715457330331,3.53239675751252,4.2182728397617,4.48093200941392,1.24406970610093,2.27450482590307,0.841767423545896,5.98554037628437,5.51765050640335,4.50155324513373,5.42537344208574,7.62008790494872,4.48398020996974,5.43470002446427,3.62184719034622,5.82033580918674,7.18603104637713,5.63043597324636,3.28793598641362,3.61461423993277,2.78601733217733,3.08673204611915,4.37875387000685,1.40442637462647,0.772043721344145,1.42081749697796,3.72826390563903,2.11073453982987,1.80062061461015,2.3674473558521,2.95146347621106,2.1597395804233,2.55787339225449,1.60964040839772,1.5179494507732,1.97471819896177,1.14917224855367,1.37816976227955,0.146199987425332,0.439100230582101,1.07365135008297,2.73376933133365,2.36680608472354,0,0.264450566663544,4.05247676016945,4.18026009348789,2.19074684247559,1.61346819698674,2.44615848229357,0.951128130562796,0,0.823494773620054,1.50801125280162,0.994782360205754,1.16978452271472,0.898819408654221,0.432276099749388,0.199141273254367,4.1726938209678,5.02693455482807,9.01661885384643,3.05476991767971,4.26695471768777,5.54072977133517,1.58091342810643,1.47610147979602,1.56998727841375,0.863780147452604,0,1.66845105716094,0.786235980452812,1.57403478669398,0.811440485554012,0.482354319504834,0.50925170356284,1.43848068725405,0.324270453550071,0.549122826376163,1.43768206527355,0.372140947668503,0.936113019343682,1.01031551178845,0.358794827043824,0,1.10851914099963,4.35830247072115,3.91115943460862,2.8856664581782,2.81628297946203,3.51763140627813,3.33261097240419,1.36593553500459,4.09851374676097,5.3151525515706,2.71073106717728,1.3109065177259,1.55416483679306,1.59113964439663,1.50791283939272,0,1.96705709207614,1.65562047782839,2.88991061978026,4.57125577709592,0,0.504941854408746,0.94652465824877,0,1.29254038639679,1.19484398976276,0.668396022247182,0,0.809621403349789,0.292255857911312,0.790575555893047,4.81981974632711,1.98716119291576,5.52003371368491,4.39794790254655,3.29940245945071,2.65490276679926,2.6705869977048,4.23252979750651,0.377210159511796,1.47650946440386,1.53717573971964,1.29214146584111,1.45413491791002,2.49548164869305,0.632073515871632,0,2.06271086496374,3.74483566329167,5.58189391497062,3.75140182969988,5.5727629108214,3.54680467284547,3.56737635204141,1.97458824722545,1.522324745573,3.05073220482823,1.0591603543191,0.441056796109924,0.98931751764888,1.29171541356724,2.41251699712623,1.79058516004705,0.984845398470368,0.874442509889552,3.52308073819968,1.02522528478712,4.74689796315412,2.03713980106683,1.13021074202815,0.683471138605126,1.14389086603261,0.509935289981566,0.69975726161829,0.967399816630967,0.954670618015114,3.79603192297362,3.45643094115643,2.05210147561422,2.92723614420256,1.52853794622324,1.75323650300267,1.1571483801547,0.523511883968059,0.518459893167171,0,0,5.68162874967119,4.63283773279873,4.66682852025714,2.71235629303235,3.8859908862879,3.63807439801837,4.4269490846943,5.13810787685983,1.44950472495604,1.15212002503146,0,2.63542779877213,1.54066435747241,2.07873316764472,1.43221356533985,2.58285761215644,2.04332264183947,1.9199638532695,2.62512769865184,3.20068587950999,2.21817607301049,0.877120926657772,1.92423683280659,2.45441494581295,1.36038230169127,0.887943813496259,0.62799699626633,0.839423081820392,1.73870634628971,1.87682475451182,2.19781949120718,0.857473516316263,0.501572104035363,1.12950368523413,4.60325236507177,1.71868654031819,2.57779773515531,2.74033007908257,6.7985450765073,6.07520250208625,4.5032120322422,2.71885445390523,5.1776031175182,2.59468368960442,5.1873233542134,6.4878770186571,2.43106717068294,1.46729213839588,1.47074806760011,1.11123363900808,2.26638562962784,2.24643446714271,2.52697211763797,2.78827229879264,2.26351609663291,1.21733959710847,2.43295579138503,1.43588672389033,2.85776214769844,1.85414921511769,1.73618298417335,0.412085900803307,1.76638704161277,0,1.4198064492747,1.66905332963125,1.16277133305863,2.72917203204459,1.60767754994185,2.74391959309159,1.8414879800649,1.22223702461276,2.24456908663095,3.08451047122853,3.34915240076916,2.45538625901814,1.85924209423159,3.2794123866794,1.74867404556562,1.87145286756327,2.14871054048298,2.29545998482612,0.661774257358546,1.15933917810211
|short_description=p1@Crocc
}}

Revision as of 04:18, 14 September 2013

Short description:p1@Crocc
Species:Mouse (Mus musculus)
DPI dataset: NA
TSS-like-by-RIKEN-classifier(Yes/No): NA
DHS support(Yes/No): NA
Description: CAGE_peak_1_at_Crocc_5end
Coexpression cluster:NA
Association with transcript: 0bp_to_ENSMUST00000097816, ENSMUST00000144196, NM_001145958, uc012dnz.1_5end
EntrezGene:Crocc
Link to Zenbu:ZENBU


View on UCSC genome browser

Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression

Sample

p1@Crocc

Atoh1+ Inner ear hair cells - organ of corti, pool1.CNhs12533.12158-128G71.44
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13242.11850-124I50.00
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13233.11851-124I60.00
CD326+ enterocyte, pool1.CNhs13542.11848-124I30.91
CD326+ enterocyte, pool2.CNhs13197.11849-124I40.00
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13236.11852-124I70.67
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13210.11853-124I80.00
CD4+CD25+ regulatory T cells, pool2 (Balb_cAJcl).CNhs13221.11818-124E91.16
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool1 (C57BL_6J).CNhs13219.11816-124E70.56
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool2 (Balb_cAJcl).CNhs13226.11820-124F20.23
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool1 (C57BL_6J).CNhs13218.11815-124E60.17
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool2 (Balb_cAJcl).CNhs13225.11819-124F10.40
CD4+CD25-CD44- naive conventional T cells, pool1 (C57BL_6J).CNhs13217.11813-124E41.37
CD4+CD25-CD44- naive conventional T cells, pool2 (Balb_cAJcl).CNhs13220.11817-124E81.40
CD41+ megakaryocyte cancer, donor1.CNhs13079.11774-124A10.00
CD41+ megakaryocyte cancer, donor2.CNhs13213.11776-124A30.20
CD41+ megakaryocyte cancer, donor3.CNhs13506.11778-124A50.00
CD41+ megakaryocyte control, donor1.CNhs13212.11775-124A22.05
CD41+ megakaryocyte control, donor2.CNhs13214.11777-124A41.37
CD41+ megakaryocyte control, donor3.CNhs13201.11779-124A62.12
Clontech Mouse Universal Reference Total RNA, pool1.CNhs10609.10001-101A31.62
EBF KO HPCs induced to T cell, 00hr00min, biol_rep1.CNhs11058.12972-138H21.09
EBF KO HPCs induced to T cell, 00hr00min, biol_rep2.CNhs12980.12988-138I92.09
Follicle Associated Epithelium, pool2.CNhs13211.10262-104D10.16
Follicle Associated Epithelium, pool3.CNhs13200.10263-104D20.46
GP2+ M cell, pool1.CNhs13228.11845-124H90.00
GP2+ M cell, pool2.CNhs13231.11846-124I10.43
GP2+ M cell, pool3.CNhs13240.11847-124I20.43
Ileum epithelium, pool1.CNhs13199.10252-104B90.38
Ileum epithelium, pool2.CNhs13232.10253-104C10.25
Ileum epithelium, treated with RANKL, day03, pool3.CNhs13234.10260-104C80.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep1.CNhs12449.13063-139I31.91
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep2.CNhs12668.13129-140G62.46
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep3.CNhs12770.13195-141E90.00
Lgr5 positive intestinal stem cells, pool1.CNhs12555.12228-129F50.87
Lgr5 positive intestinal stem cells, pool2.CNhs12556.12229-129F60.33
Lgr5 positive intestinal stem cells, pool3.CNhs12557.12230-129F70.61
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor1 (10,11,12 3LL).CNhs12539.12159-128G80.84
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor2 (0127 3LL).CNhs12198.12161-128H11.56
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor3 (0128 3LL).CNhs12542.12163-128H30.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor1 (4,5,6PBS).CNhs12540.12160-128G90.59
MC1+Gr1+ myeloid-derived suppressor cells control, donor2 (0127 PBS).CNhs12541.12162-128H20.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor3 (0128 PBS).CNhs12543.12164-128H40.00
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep1.CNhs11055.11484-119D80.38
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep2.CNhs11056.11485-119D90.51
Mouse Aortic Smooth Muscle cells, donor1.CNhs11297.11299-117B30.18
Mouse Astrocytes - cerebellar, donor1.CNhs13077.11708-123B70.00
Mouse Astrocytes - cerebellar, donor2.CNhs12076.11550-120C20.87
Mouse Astrocytes - hippocampus, donor1.CNhs12129.11709-123B80.22
Mouse Astrocytes - hippocampus, donor2.CNhs12077.11551-120C30.58
Mouse Astrocytes, donor2.CNhs12078.11552-120C40.84
Mouse Astrocytes, donor3.CNhs12107.11633-122C40.00
Mouse CD19+ B Cells, donor1.CNhs13531.11856-125A21.51
Mouse CD4+ T Cells, donor1.CNhs13509.11854-124I90.73
Mouse CD8+ T Cells, donor1.CNhs13511.11855-125A11.68
Mouse Cardiac Myocytes, donor1.CNhs12355.11711-123C10.00
Mouse Cardiac Myocytes, donor2.CNhs12356.11729-123E10.29
Mouse Cardiac Myocytes, donor3.CNhs12353.11634-122C50.52
Mouse Granule cells, donor1.CNhs12131.11713-123C31.01
Mouse Granule cells, donor2.CNhs12357.11731-123E30.53
Mouse Granule cells, donor3.CNhs12108.11636-122C71.27
Mouse Meningeal cells, donor1.CNhs12132.11716-123C60.34
Mouse Meningeal cells, donor3.CNhs12109.11639-122D10.00
Mouse Mesenchymal stem cells - bone marrow derived, donor1.CNhs12628.11717-123C70.00
Mouse Mesenchymal stem cells - bone marrow derived, donor2.CNhs12633.11735-123E70.00
Mouse Mesenchymal stem cells - bone marrow derived, donor3.CNhs12616.11640-122D20.71
Mouse Microglia, donor1.CNhs12629.11718-123C80.90
Mouse Microglia, donor2.CNhs12634.11736-123E81.92
Mouse Neurons - cortical, donor1.CNhs12025.11724-123D52.18
Mouse Neurons - cortical, donor2.CNhs11947.11742-123F51.08
Mouse Neurons - cortical, donor3.CNhs12112.11647-122D91.26
Mouse Neurons - dorsal spinal cord, donor2.CNhs12635.11738-123F10.57
Mouse Neurons - dorsal spinal cord, donor3.CNhs12618.11643-122D50.44
Mouse Neurons - hippocampal, donor1.CNhs12133.11721-123D21.71
Mouse Neurons - hippocampal, donor2.CNhs12359.11739-123F21.92
Mouse Neurons - hippocampal, donor3.CNhs12110.11644-122D61.84
Mouse Neurons - raphe, donor1.CNhs12631.11722-123D30.00
Mouse Neurons - raphe, donor2.CNhs12636.11740-123F31.02
Mouse Neurons - raphe, donor3.CNhs12619.11645-122D70.77
Mouse Neurons - striatal, donor1.CNhs12134.11723-123D41.85
Mouse Neurons - striatal, donor2.CNhs12360.11741-123F41.10
Mouse Neurons - striatal, donor3.CNhs12111.11646-122D81.04
Mouse Neurons - substantia nigra, donor4, tech_rep1.CNhs12612.11489-119E40.84
Mouse Neurons - substantia nigra, donor5.CNhs12614.11490-119E50.00
Mouse Neurons - substantia nigra, donor6.CNhs12643.11770-123I61.07
Mouse Neurons - ventral spinal cord, donor1.CNhs12632.11725-123D60.29
Mouse Neurons - ventral spinal cord, donor2.CNhs12638.11743-123F60.43
Mouse Neurons - ventral spinal cord, donor3.CNhs12113.11648-122E10.37
Mouse Schwann, donor1.CNhs12507.11728-123D90.15
Mouse Schwann, donor2.CNhs12573.11746-123F90.08
Mouse hepatic Sinusoidal Endothelial Cells, donor1.CNhs13209.11830-124G31.16
Mouse hepatic Stellate Cells (lipocyte), donor1.CNhs13196.11825-124F70.00
Mouse hepatocyte, donor1.CNhs13078.11714-123C40.00
Mouse hepatocyte, donor3.CNhs12615.11637-122C80.00
Mouse hepatocyte, donor6.CNhs13090.11822-124F40.00
Mouse hepatocyte, donor8.CNhs13091.11824-124F60.00
SABiosciences XpressRef Mouse Universal Total RNA, pool1.CNhs10611.10003-101A70.42
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep1 (000hC4).CNhs11939.12338-130I70.34
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep2 (000hC5).CNhs13275.12460-132E30.78
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep3 (000hC6).CNhs13324.12582-133I80.71
Sox2+ Supporting cells - organ of corti, pool1.CNhs12532.12157-128G60.42
TSt-4/DLL1 feeder cells, biol_rep1.CNhs13407.12971-138H12.57
TSt-4/DLL1 feeder cells, biol_rep2.CNhs13408.12987-138I82.55
TSt-4/DLL1 feeder cells, biol_rep3.CNhs13409.13003-139B60.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep1.CNhs13739.13367-143G10.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep2.CNhs13740.13368-143G20.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep3.CNhs13741.13369-143G31.01
Universal RNA - Mouse Normal Tissues Biochain, pool1.CNhs10613.10008-101B60.57
accessory axillary lymph node, adult.CNhs10475.1063-29H90.26
adrenal gland, adult.CNhs10508.49-24D70.74
adrenal gland, embryo E14.CNhs11038.406-44C52.08
adrenal gland, embryo E16.CNhs11004.1254-43D60.61
adrenal gland, embryo E17.CNhs11043.1263-45I12.31
adrenal gland, embryo E18.CNhs11026.1262-18F50.75
adrenal gland, neonate N00.CNhs11191.1311-23C10.82
adrenal gland, neonate N25.CNhs11223.1377-27I31.01
amnion, adult pregnant day17.5.CNhs10488.583-22A80.99
aorta, adult.CNhs10498.46-23H10.29
bone (os femoris), adult.CNhs10483.56-12G21.77
bone (os femoris), neonate N02.CNhs11227.1985-43F51.78
bone (os femoris), neonate N16.CNhs11225.1525-43A61.10
bone (os femoris), neonate N20.CNhs11195.1350-25C30.48
cecum, adult.CNhs10467.37-13H40.00
cerebellum, adult.CNhs10494.15-8B25.86
cerebellum, neonate N30.CNhs11135.1395-42I23.56
colon, adult.CNhs10468.36-18H70.26
common myeloid progenitor CMP, biol_rep1.CNhs12550.12122-128C70.48
common myeloid progenitor CMP, biol_rep2.CNhs12203.12125-128D12.40
common myeloid progenitor CMP, biol_rep3.CNhs12551.12128-128D40.51
corpora quadrigemina, adult.CNhs10501.16-22A45.39
corpus striatum, adult.CNhs10487.19-21D86.86
corpus striatum, neonate N00.CNhs11226.630-43F12.89
cortex, adult.CNhs10473.12-14D53.48
cortex, neonate N30.CNhs11107.1392-42F22.56
diencephalon, adult.CNhs10482.20-12F23.53
diencephalon, neonate N30.CNhs11201.1388-42B24.22
epididymis and seminiferous tubule, neonate N00.CNhs11218.1310-23B14.48
epididymis and seminiferous tubule, neonate N30.CNhs11199.1387-42A21.24
epididymis, adult.CNhs10490.58-23B22.27
eyeball, adult.CNhs10484.31-12G40.84
eyeball, embryo E12.CNhs11016.345-16C65.99
eyeball, embryo E14.CNhs10521.399-16E25.52
eyeball, embryo E15.CNhs10593.426-16C94.50
eyeball, embryo E17.CNhs11023.1261-18D45.43
eyeball, neonate N00.CNhs11207.633-15C67.62
eyeball, neonate N01.CNhs11140.1532-43E74.48
eyeball, neonate N02.CNhs11205.1551-44G85.43
eyeball, neonate N16.CNhs11188.777-19A23.62
forelimb, embryo E11.CNhs10596.335-25E25.82
forelimb, embryo E12.CNhs10600.359-14H27.19
forelimb, embryo E13.CNhs10589.384-1E25.63
forelimb, embryo E14.CNhs10577.413-26A83.29
forelimb, embryo E15.CNhs11007.437-20E73.61
forelimb, embryo E17.CNhs10598.1517-43C42.79
forelimb, embryo E18.CNhs11008.1520-43B53.09
gonad, embryo E13.CNhs11044.1564-45I64.38
granulocyte macrophage progenitor GMP, biol_rep1.CNhs12206.12123-128C81.40
granulocyte macrophage progenitor GMP, biol_rep2.CNhs12202.12126-128D20.77
granulocyte macrophage progenitor GMP, biol_rep3.CNhs11928.12129-128D51.42
heart, embryo E11.CNhs10586.331-24E93.73
heart, embryo E12.CNhs11015.353-12F52.11
heart, embryo E13.CNhs11013.376-3I91.80
heart, embryo E14.CNhs10597.403-26D42.37
heart, embryo E15.CNhs11017.431-16C82.95
heart, embryo E16.CNhs11021.457-17C62.16
heart, embryo E17.CNhs11025.479-18E52.56
heart, embryo E18.CNhs11030.1283-20G31.61
heart, neonate N00.CNhs11213.639-21E31.52
heart, neonate N03.CNhs11221.1349-25I21.97
heart, neonate N10.CNhs11118.749-24G11.15
heart, neonate N16.CNhs11209.782-15G11.38
heart, neonate N20.CNhs11127.821-26I60.15
heart, neonate N25.CNhs11196.1351-25D30.44
heart, neonate N30.CNhs11202.1390-42D21.07
hippocampus, adult.CNhs10478.13-16E82.73
hippocampus, neonate N00.CNhs11228.627-43G12.37
intestinal mucosa, adult.CNhs10506.860-29I30.00
intestine, adult.CNhs10496.178-9A30.26
intestine, embryo E12.CNhs11019.1251-16I54.05
intestine, embryo E13.CNhs11010.381-16D54.18
intestine, embryo E15.CNhs10602.976-16D82.19
intestine, embryo E16.CNhs10585.463-22H41.61
intestine, embryo E17.CNhs10582.482-18D32.45
intestine, embryo E18.CNhs10526.1289-20F70.95
intestine, neonate N00.CNhs11126.644-26D10.00
intestine, neonate N01.CNhs11192.1322-23E90.82
intestine, neonate N06.CNhs11102.688-20B81.51
intestine, neonate N07.CNhs11095.720-20F20.99
intestine, neonate N10.CNhs11098.755-23A51.17
intestine, neonate N20.CNhs11187.827-18D10.90
intestine, neonate N25.CNhs11121.1352-25E30.43
intestine, neonate N30.CNhs11131.1384-42G10.20
kidney, embryo E14.CNhs10606.411-4I94.17
kidney, embryo E15.CNhs10997.434-16F85.03
kidney, embryo E16.CNhs10584.464-22A59.02
kidney, embryo E17.CNhs11028.483-18I23.05
kidney, embryo E18.CNhs11001.1288-20C74.27
kidney, neonate N00.CNhs11214.646-21G75.54
kidney, neonate N10.CNhs11206.758-6D51.58
kidney, neonate N20.CNhs11113.832-19I11.48
kidney, neonate N25.CNhs11122.1353-25F31.57
kidney, neonate N30.CNhs11203.1385-42H10.86
liver, adult pregnant day01.CNhs10466.508-5B20.00
liver, embryo E12.CNhs10601.355-15F81.67
liver, embryo E13.CNhs10524.378-3H60.79
liver, embryo E14.CNhs10594.409-16E11.57
liver, embryo E15.CNhs10520.433-16D70.81
liver, embryo E16.CNhs10523.462-17F50.48
liver, embryo E17.CNhs10510.481-18A30.51
liver, embryo E18.CNhs10579.499-43G41.44
liver, neonate N00.CNhs11117.641-24F40.32
liver, neonate N03.CNhs11123.1345-25G20.55
liver, neonate N06.CNhs11101.684-20A81.44
liver, neonate N07.CNhs11103.716-20H20.37
liver, neonate N10.CNhs11115.751-24B90.94
liver, neonate N20.CNhs11220.823-25A31.01
liver, neonate N25.CNhs11198.1368-26H10.36
liver, neonate N30.CNhs11106.1382-42D10.00
lung, adult.CNhs10474.28-22B11.11
lung, embryo E12.CNhs10522.354-16G24.36
lung, embryo E14.CNhs10604.404-26F83.91
lung, embryo E15.CNhs11020.432-17C52.89
lung, embryo E16.CNhs10998.458-17B62.82
lung, embryo E17.CNhs10605.480-44A63.52
lung, embryo E18.CNhs10583.1287-20I63.33
lung, neonate N00.CNhs11224.640-42C61.37
lung, neonate N06.CNhs11212.683-20E54.10
lung, neonate N07.CNhs11111.715-19A35.32
lung, neonate N10.CNhs11219.750-23E62.71
lung, neonate N20.CNhs11109.822-18A41.31
lung, neonate N25.CNhs11119.1359-25C71.55
lung, neonate N30.CNhs11133.1394-42H21.59
macrophage, bone marrow derived, pool1.CNhs11457.3560-170A11.51
macrophage, bone marrow derived, pool2.CNhs11532.3632-171A10.00
mammary gland, adult lactating day02.CNhs10480.595-22B61.97
mammary gland, adult pregnant day19.CNhs10476.588-5H21.66
medulla oblongata, adult.CNhs10477.17-12C22.89
medulla oblongata, neonate N30.CNhs11200.1396-42A34.57
mouse fibroblast cell line: CRL-1658 NIH/3T3.CNhs11093.1830-49C70.00
muscle (biceps femoris), neonate N30.CNhs11129.1389-42C20.50
neurospheres - enteric neuron derived, biol_rep1.CNhs13087.11810-124E10.95
neurospheres - enteric neuron derived, biol_rep2.CNhs13088.11811-124E20.00
neurospheres - enteric neuron derived, biol_rep3.CNhs13089.11812-124E31.29
neurospheres - parasympathetic neuron derived, biol_rep1.CNhs13084.11807-124D71.19
neurospheres - parasympathetic neuron derived, biol_rep2.CNhs13085.11808-124D80.67
neurospheres - parasympathetic neuron derived, biol_rep3.CNhs13086.11809-124D90.00
neurospheres - sympathetic neuron derived, biol_rep1.CNhs13081.11804-124D40.81
neurospheres - sympathetic neuron derived, biol_rep2.CNhs13082.11805-124D50.29
neurospheres - sympathetic neuron derived, biol_rep3.CNhs13083.11806-124D60.79
olfactory brain, adult.CNhs10489.18-22I94.82
ovary, adult.CNhs10507.91-2I71.99
ovary, embryo E18.CNhs11040.505-44H75.52
ovary, neonate N00.CNhs11217.1299-22I44.40
oviduct, adult pregnant day01.CNhs10500.988-6G63.30
pancreas, adult.CNhs10486.34-16E42.65
pancreas, embryo E14.CNhs11012.405-44F42.67
pancreas, embryo E15.CNhs11042.1556-45F24.23
pancreas, embryo E16.CNhs11003.460-26E50.38
pancreas, embryo E17.CNhs10599.1558-45G31.48
pancreas, embryo E18.CNhs10580.1535-43I71.54
pancreas, neonate N00.CNhs11105.645-26G91.29
pancreas, neonate N01.CNhs11138.1531-43D71.45
pancreas, neonate N02.CNhs11139.1539-43D82.50
pancreas, neonate N16.CNhs11136.787-43B60.63
pancreas, neonate N25.CNhs11094.1555-45E20.00
pancreas, neonate N30.CNhs11182.1548-44H52.06
pituitary gland, adult.CNhs10493.21-1G83.74
pituitary gland, embryo E12.CNhs11018.346-16E65.58
pituitary gland, embryo E13.CNhs11009.370-44C73.75
pituitary gland, embryo E14.CNhs11037.398-44A55.57
pituitary gland, embryo E15.CNhs10592.427-16B93.55
pituitary gland, embryo E16.CNhs11036.449-43F63.57
pituitary gland, embryo E17.CNhs11039.1265-44F51.97
pituitary gland, neonate N00.CNhs11190.1308-22E91.52
placenta, adult pregnant day10.CNhs10472.539-13I73.05
placenta, adult pregnant day17.CNhs10464.577-18G31.06
prostate, adult.CNhs10470.859-1F80.44
skin, adult.CNhs10492.30-1C30.99
skin, neonate N00.CNhs11124.650-25G41.29
skin, neonate N03.CNhs11215.662-22H32.41
skin, neonate N06.CNhs11097.693-20I51.79
skin, neonate N10.CNhs11108.762-6C40.98
small intestine, neonate N16.CNhs11114.790-21I10.87
spinal cord, adult.CNhs10505.24-13C93.52
spleen, adult.CNhs10465.25-2G21.03
spleen, embryo E16.CNhs11035.461-43C14.75
spleen, embryo E18.CNhs11011.1271-21F22.04
spleen, neonate N10.CNhs11116.752-24D11.13
spleen, neonate N20.CNhs11112.824-19H10.68
spleen, neonate N25.CNhs11099.1354-25G31.14
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep1.CNhs12534.12121-128C60.51
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep2.CNhs12535.12124-128C90.70
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep3.CNhs12536.12127-128D30.97
stomach, adult.CNhs10503.33-1H60.95
stomach, embryo E12.CNhs10588.356-43E33.80
stomach, embryo E15.CNhs10603.1252-16G83.46
stomach, embryo E16.CNhs11022.459-17D42.05
stomach, embryo E17.CNhs11006.1035-18D52.93
stomach, embryo E18.CNhs10999.1286-20C61.53
stomach, neonate N03.CNhs11193.1340-24B81.75
stomach, neonate N07.CNhs11210.718-18A91.16
stomach, neonate N25.CNhs11104.1355-25E40.52
stomach, neonate N30.CNhs11134.1386-42I10.52
submandibular gland, adult.CNhs10469.59-29C10.00
testis, adult.CNhs10504.57-7G50.00
testis, embryo E13.CNhs11031.389-23F55.68
testis, embryo E15.CNhs11034.443-27C54.63
testis, embryo E16.CNhs11033.470-26G54.67
testis, embryo E17.CNhs11029.486-18I52.71
testis, embryo E18.CNhs11027.503-18G53.89
testis, neonate N00.CNhs11189.1300-22B73.64
testis, neonate N07.CNhs11222.726-26I44.43
testis, neonate N10.CNhs11204.763-44D95.14
testis, neonate N20.CNhs11110.839-18H31.45
testis, neonate N30.CNhs11130.1391-42E21.15
thymus, adult.CNhs10471.38-12B50.00
thymus, embryo E14.CNhs11041.402-44I42.64
thymus, embryo E15.CNhs11005.430-45I21.54
thymus, embryo E16.CNhs11002.456-26C52.08
thymus, embryo E17.CNhs10581.478-18C11.43
thymus, embryo E18.CNhs10595.1273-19G42.58
thymus, neonate N02.CNhs11181.1541-43F82.04
thymus, neonate N03.CNhs11137.2104-43C71.92
thymus, neonate N06.CNhs11197.681-26C42.63
thymus, neonate N07.CNhs11211.713-19D33.20
thymus, neonate N10.CNhs11194.748-24E42.22
thymus, neonate N20.CNhs11186.820-7A20.88
thymus, neonate N25.CNhs11125.1362-25G71.92
thymus, neonate N30.CNhs11132.1393-42G22.45
tongue, adult.CNhs10499.32-1B41.36
trophoblast stem cell line B1 differentiation, day00, biol_rep1.CNhs13526.13297-142H30.89
trophoblast stem cell line R1AB differentiation, day00, biol_rep1.CNhs13481.13283-142F70.63
trophoblast stem cell line Rybp differentiation, day00, biol_rep1.CNhs13519.13290-142G50.84
urinary bladder, adult.CNhs10481.879-12E41.74
uterus, adult pregnant day19.CNhs10497.590-15F51.88
uterus, adult.CNhs10509.92-27E52.20
vagina, adult.CNhs10502.89-27D50.86
vesicular gland, adult.CNhs10491.51-27F80.50
visual cortex - wildtype, neonate N15, donor1.CNhs13031.10235-104A11.13
visual cortex - wildtype, neonate N15, donor2.CNhs13032.10236-104A24.60
visual cortex - wildtype, neonate N15, donor3.CNhs13033.10237-104A31.72
visual cortex - wildtype, neonate N15, donor5.CNhs13820.10349-105D72.58
visual cortex - wildtype, neonate N30, donor1.CNhs13034.10238-104A42.74
visual cortex - wildtype, neonate N30, donor2.CNhs13035.10239-104A56.80
visual cortex - wildtype, neonate N30, donor3.CNhs13036.10240-104A66.08
visual cortex - wildtype, neonate N60-70, donor1.CNhs13037.10241-104A74.50
visual cortex - wildtype, neonate N60-70, donor2.CNhs13038.10242-104A82.72
visual cortex - wildtype, neonate N60-70, donor3.CNhs13039.10243-104A95.18
whole body, embryo E11.CNhs11014.324-5I82.59
whole body, embryo E12.CNhs10587.857-27C95.19
whole body, embryo E13.CNhs10512.372-23H26.49
whole body, embryo E14.5.CNhs10578.420-27D22.43
whole body, embryo E14.CNhs10519.395-14B11.47
whole body, embryo E16.CNhs10514.453-14F21.47
whole body, embryo E17.5, pool1 (internal control).CNhs10479.3139-67G51.11
whole body, embryo E17.5, pool1 (internal control).CNhs10495.3139-67G52.27
whole body, embryo E17.5, pool1 (internal control).CNhs10511.3139-67G52.25
whole body, embryo E17.5, pool1 (internal control).CNhs10527.3139-67G52.53
whole body, embryo E17.5, pool1 (internal control).CNhs10591.3139-67G52.79
whole body, embryo E17.5, pool1 (internal control).CNhs10607.3139-67G52.26
whole body, embryo E17.5, pool1 (internal control).CNhs10623.3139-67G51.22
whole body, embryo E17.5, pool1 (internal control).CNhs10639.3139-67G52.43
whole body, embryo E17.5, pool1 (internal control).CNhs10655.3139-67G51.44
whole body, embryo E17.5, pool1 (internal control).CNhs10725.3139-67G52.86
whole body, embryo E17.5, pool1 (internal control).CNhs10749.3139-67G51.85
whole body, embryo E17.5, pool1 (internal control).CNhs10840.3139-67G51.74
whole body, embryo E17.5, pool1 (internal control).CNhs10856.3139-67G50.41
whole body, embryo E17.5, pool1 (internal control).CNhs10880.3139-67G51.77
whole body, embryo E17.5, pool1 (internal control).CNhs11000.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs11024.3139-67G51.42
whole body, embryo E17.5, pool1 (internal control).CNhs11032.3139-67G51.67
whole body, embryo E17.5, pool1 (internal control).CNhs11048.3139-67G51.16
whole body, embryo E17.5, pool1 (internal control).CNhs11072.3139-67G52.73
whole body, embryo E17.5, pool1 (internal control).CNhs11080.3139-67G51.61
whole body, embryo E17.5, pool1 (internal control).CNhs11096.3139-67G52.74
whole body, embryo E17.5, pool1 (internal control).CNhs11120.3139-67G51.84
whole body, embryo E17.5, pool1 (internal control).CNhs11128.3139-67G51.22
whole body, embryo E17.5, pool1 (internal control).CNhs11184.3139-67G52.24
whole body, embryo E17.5, pool1 (internal control).CNhs11208.3139-67G53.08
whole body, embryo E17.5, pool1 (internal control).CNhs11216.3139-67G53.35
whole body, embryo E17.5, pool1 (internal control).CNhs11246.3139-67G52.46
whole body, embryo E17.5, pool1 (internal control).CNhs11278.3139-67G51.86
whole body, embryo E17.5.CNhs10513.490-9F93.28
whole body, embryo E17.CNhs10517.475-3I51.75
whole body, embryo E18.CNhs10516.493-3B31.87
whole body, neonate N00.CNhs10525.657-19C22.15
whole body, neonate N01.CNhs10576.659-23C62.30
whole body, neonate N06.CNhs10515.692-21D10.66
whole body, neonate N10.CNhs10518.761-6B41.16





  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data

Uber anatomy
Ontology termp-valuen
pre-chordal neural plate3.12e-0949
brain5.05e-0747
future brain5.05e-0747
neurectoderm9.85e-0764
neural plate9.85e-0764
presumptive neural plate9.85e-0764







Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process. Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process. Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FFCP_PHASE1:Mm9::chr4:140616451..140616482,-&oldid=3007856"