FFCP PHASE1:Mm9::chr5:136438809..136438830,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=105|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr5:136438809..136438830,+|id=chr5:136438809..136438830,+|ontology_enrichment_celltype=CL:0000066!7.49e-09!25;CL:0002563!7.56e-08!9;CL:0002251!7.56e-08!9;CL:0000063!9.16e-08!66;CL:0000144!1.36e-07!121;CL:0000012!1.36e-07!121|ontology_enrichment_celltype_v019_2=CL:0000066,1.04e-26,25;CL:0002563,2.25e-21,9;CL:0002251,2.25e-21,9;CL:0000223,2.00e-19,20;CL:0002076,1.56e-18,15;CL:0000075,3.30e-15,7;CL:0000239,7.81e-13,6;CL:0000677,7.81e-13,6;CL:0000584,7.81e-13,6;CL:0002250,2.40e-10,3;CL:0000034,1.60e-07,97;CL:0002321,3.02e-07,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=DOID:0050686,4.43e-08,6|ontology_enrichment_uberon=UBERON:0000485!4.73e-09!11;UBERON:0003350!7.56e-08!9;UBERON:0004808!7.56e-08!9;UBERON:0001277!7.56e-08!9|ontology_enrichment_uberon_v019_2=UBERON:0000485,4.24e-26,11;UBERON:0003350,2.25e-21,9;UBERON:0004808,2.25e-21,9;UBERON:0001277,2.25e-21,9;UBERON:0001242,2.30e-14,13;UBERON:0001262,2.30e-14,13;UBERON:0004786,2.30e-14,13;UBERON:0000344,2.92e-12,15;UBERON:0000490,1.48e-09,66;UBERON:0004923,3.86e-07,24;UBERON:0003929,9.68e-07,55|phase1_expression=1.28119077683835,3.48975407639361,0.909998478779072,6.65421264875026,10.5188103288733,2.85394762250213,2.10251376535973,1.42035655785734,1.97104211012333,2.57470978954193,0.68487187290202,0.0797721589953364,2.56801094896809,0.786783621770977,0,0.202475267389826,0,0.157731082679119,0,0,0.255129870453209,0.397163804803541,0,0.319984845586813,0,1.14846392823004,0.86152399231815,1.72376986148711,0,0,0,1.90509202037889,1.84519436275371,0,17.908800424579,4.98703936075477,17.150225926039,2.92972141515835,2.3440060335714,0.523523743973798,1.76469446409304,1.36609096991689,0.971020706062307,0.125896817975577,0.506884656097573,0.183546752161682,0,0,0.219686182734472,0.194429899074283,0.139986421625363,0,0,0.725362142011344,0.672187598284928,0,0,0,0.809265843438391,0,0.633831403506179,0,0,0,0,0,0.299600110518405,0,0.103689612308478,0.135005938331691,0,0.285650984403804,0.441737081903227,0.122490799214954,0.0958454710182364,0,1.10115880999389,0,0.153606533256243,0.263772575460388,0.182975287204819,0,0,0,0.61119299110724,0,0.284743361598206,0.372798891650601,0,0,13.0439019915755,0.860423876981386,0.679971333707751,0,1.29955283489534,0,0,0.340860645156116,0,0,1.40843419776681,0,0,0,0.432982082022428,1.01343946190039,1.51657333504435,0.11418387971906,0,0,0.173485326766136,0,0,0.60289056221049,0.352766121407114,0.125666591329675,0.247194967734374,0.86759614151947,0,0,0,0,0,0,0.209446706813455,0.510914110417183,0.479260498023681,1.19980546198682,0.381210681219194,0,0,0.502617408451458,0,0,0.20778804455956,0.162241263067758,0.101839363850316,0.124406970610093,0.758168275301024,0.210441855886474,0,0,0.180062129805349,0.30140963567143,0.204109497453984,0.2562274405697,0,0.258703370739016,0,0.189106080167819,0.527853372491847,0,0.278047249225598,0.348252166522167,0.205782136407943,0,0,0.51469581422943,0.284163499395593,0,0,0,0.23674473558521,0.196764231747404,0,0,0,0.116765342367169,0,0.164167464079095,0,0.292399974850665,0,0.134206418760372,0,0,0,0,0.426576501070468,0.232236671860439,0.128867461322093,0,0,0.190225626112559,0,0,0,0,0,0,0,0,0.189667900953082,0.114248512609729,0,0.814605311381257,0.387904974335251,0,0.0632365371242573,0,0,0,0.592905254174298,0.166845105716094,0,0,0,0,0,0,0.324270453550071,0,0,0,0,0.505157755894224,0.179397413521912,0.964887042726734,0,0.189491411770485,0,0.339490171550376,0.234690248288502,0.167506257441816,0.238043640886014,0.390267295715598,0,0,0.159454768657487,0.491589944147214,0,0,0,1.08781136763742,0,0,0,0.117211686592203,0,0,1.26203287766503,0.390438744296638,0.215423397732799,0.955875191810208,0,0,0,0,0.395287777946524,0.321321316421807,0,0.534196811001766,0.651547837414304,0.164970122972535,0,0.242780636154981,0,0.377210159511796,0,0.307435147943927,0,0.363533729477506,0.356497378384721,0,0,0,0.340439605753788,0.900305470156551,0.776152102696527,0.214337035031592,0.354680467284547,0.178368817602071,0.329098041204242,0.608929898229199,0,0.42366414172764,0,0.16488625294148,0.161464426695906,0.0603129249281559,0.238744688006273,0.164140899745061,0,0.18542530201051,0,0.412773735926445,0,0,0,0,1.35982743995084,1.39951452323658,0.967399816630967,0,0.316335993581135,0.406638934253697,0,0.418176592028937,0.436725127492355,0.269728692769641,0.165306911450672,0.26175594198403,0,0,0,0.149516546043979,0.165458490457098,0,0.516639293910924,0.168956125490778,0.117357238645754,0.13020438484395,0.104859344425711,0,0.864090018773596,0,0,0.102710957164827,0,0,0.39736270956253,0.360586348559907,0.147689527174577,0,0.228620419965,0.100826185136841,0.194915761479505,0.384847366561318,0.350630706544707,0.226730383615211,0.221985953374065,0.179427713218951,0.167884616364078,0.19318959403219,0,0,0.428736758158132,0,0.564751842617067,0,0.572895513439397,0,0,0,0,0,0,0,0.103787347584177,0,0.170733605754134,0,0.838452650511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| ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=105 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr5:136438809..136438830,+ | |||
|id=chr5:136438809..136438830,+ | |||
|ontology_enrichment_celltype=CL:0000066!7.49e-09!25;CL:0002563!7.56e-08!9;CL:0002251!7.56e-08!9;CL:0000063!9.16e-08!66;CL:0000144!1.36e-07!121;CL:0000012!1.36e-07!121 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.04e-26,25;CL:0002563,2.25e-21,9;CL:0002251,2.25e-21,9;CL:0000223,2.00e-19,20;CL:0002076,1.56e-18,15;CL:0000075,3.30e-15,7;CL:0000239,7.81e-13,6;CL:0000677,7.81e-13,6;CL:0000584,7.81e-13,6;CL:0002250,2.40e-10,3;CL:0000034,1.60e-07,97;CL:0002321,3.02e-07,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2=DOID:0050686,4.43e-08,6 | |||
|ontology_enrichment_uberon=UBERON:0000485!4.73e-09!11;UBERON:0003350!7.56e-08!9;UBERON:0004808!7.56e-08!9;UBERON:0001277!7.56e-08!9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000485,4.24e-26,11;UBERON:0003350,2.25e-21,9;UBERON:0004808,2.25e-21,9;UBERON:0001277,2.25e-21,9;UBERON:0001242,2.30e-14,13;UBERON:0001262,2.30e-14,13;UBERON:0004786,2.30e-14,13;UBERON:0000344,2.92e-12,15;UBERON:0000490,1.48e-09,66;UBERON:0004923,3.86e-07,24;UBERON:0003929,9.68e-07,55 | |||
|phase1_expression=1.28119077683835,3.48975407639361,0.909998478779072,6.65421264875026,10.5188103288733,2.85394762250213,2.10251376535973,1.42035655785734,1.97104211012333,2.57470978954193,0.68487187290202,0.0797721589953364,2.56801094896809,0.786783621770977,0,0.202475267389826,0,0.157731082679119,0,0,0.255129870453209,0.397163804803541,0,0.319984845586813,0,1.14846392823004,0.86152399231815,1.72376986148711,0,0,0,1.90509202037889,1.84519436275371,0,17.908800424579,4.98703936075477,17.150225926039,2.92972141515835,2.3440060335714,0.523523743973798,1.76469446409304,1.36609096991689,0.971020706062307,0.125896817975577,0.506884656097573,0.183546752161682,0,0,0.219686182734472,0.194429899074283,0.139986421625363,0,0,0.725362142011344,0.672187598284928,0,0,0,0.809265843438391,0,0.633831403506179,0,0,0,0,0,0.299600110518405,0,0.103689612308478,0.135005938331691,0,0.285650984403804,0.441737081903227,0.122490799214954,0.0958454710182364,0,1.10115880999389,0,0.153606533256243,0.263772575460388,0.182975287204819,0,0,0,0.61119299110724,0,0.284743361598206,0.372798891650601,0,0,13.0439019915755,0.860423876981386,0.679971333707751,0,1.29955283489534,0,0,0.340860645156116,0,0,1.40843419776681,0,0,0,0.432982082022428,1.01343946190039,1.51657333504435,0.11418387971906,0,0,0.173485326766136,0,0,0.60289056221049,0.352766121407114,0.125666591329675,0.247194967734374,0.86759614151947,0,0,0,0,0,0,0.209446706813455,0.510914110417183,0.479260498023681,1.19980546198682,0.381210681219194,0,0,0.502617408451458,0,0,0.20778804455956,0.162241263067758,0.101839363850316,0.124406970610093,0.758168275301024,0.210441855886474,0,0,0.180062129805349,0.30140963567143,0.204109497453984,0.2562274405697,0,0.258703370739016,0,0.189106080167819,0.527853372491847,0,0.278047249225598,0.348252166522167,0.205782136407943,0,0,0.51469581422943,0.284163499395593,0,0,0,0.23674473558521,0.196764231747404,0,0,0,0.116765342367169,0,0.164167464079095,0,0.292399974850665,0,0.134206418760372,0,0,0,0,0.426576501070468,0.232236671860439,0.128867461322093,0,0,0.190225626112559,0,0,0,0,0,0,0,0,0.189667900953082,0.114248512609729,0,0.814605311381257,0.387904974335251,0,0.0632365371242573,0,0,0,0.592905254174298,0.166845105716094,0,0,0,0,0,0,0.324270453550071,0,0,0,0,0.505157755894224,0.179397413521912,0.964887042726734,0,0.189491411770485,0,0.339490171550376,0.234690248288502,0.167506257441816,0.238043640886014,0.390267295715598,0,0,0.159454768657487,0.491589944147214,0,0,0,1.08781136763742,0,0,0,0.117211686592203,0,0,1.26203287766503,0.390438744296638,0.215423397732799,0.955875191810208,0,0,0,0,0.395287777946524,0.321321316421807,0,0.534196811001766,0.651547837414304,0.164970122972535,0,0.242780636154981,0,0.377210159511796,0,0.307435147943927,0,0.363533729477506,0.356497378384721,0,0,0,0.340439605753788,0.900305470156551,0.776152102696527,0.214337035031592,0.354680467284547,0.178368817602071,0.329098041204242,0.608929898229199,0,0.42366414172764,0,0.16488625294148,0.161464426695906,0.0603129249281559,0.238744688006273,0.164140899745061,0,0.18542530201051,0,0.412773735926445,0,0,0,0,1.35982743995084,1.39951452323658,0.967399816630967,0,0.316335993581135,0.406638934253697,0,0.418176592028937,0.436725127492355,0.269728692769641,0.165306911450672,0.26175594198403,0,0,0,0.149516546043979,0.165458490457098,0,0.516639293910924,0.168956125490778,0.117357238645754,0.13020438484395,0.104859344425711,0,0.864090018773596,0,0,0.102710957164827,0,0,0.39736270956253,0.360586348559907,0.147689527174577,0,0.228620419965,0.100826185136841,0.194915761479505,0.384847366561318,0.350630706544707,0.226730383615211,0.221985953374065,0.179427713218951,0.167884616364078,0.19318959403219,0,0,0.428736758158132,0,0.564751842617067,0,0.572895513439397,0,0,0,0,0,0,0,0.103787347584177,0,0.170733605754134,0,0.838452650511929,0.183843508450014,0.222246727801615,0,0,0,0,0.188626341386076,0.280924522409647,0.0640251524048693,0.17230640686684,0,0,0.192909220463705,0,0.147198920134397,0.342869252385415,0,0,0.581385666529314,0.188218760830661,0,0.182927972872773,0.263069711437843,0,0,0.355905054372522,0.197008964751127,0,0,0.385813221962283,0.249810577937946,0,0.214871054048298,0,0.220591419119515,0 | |||
|short_description=p@chr5:136438809..136438830,+ | |||
}} |
Revision as of 06:41, 14 September 2013
Short description: | p@chr5:136438809..136438830, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr5:136438809..136438830, + |
Coexpression cluster: | MCL_coexpression_mm9:105 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.04e-26 | 25 |
intestinal epithelial cell | 2.25e-21 | 9 |
epithelial cell of alimentary canal | 2.25e-21 | 9 |
endodermal cell | 2.00e-19 | 20 |
endo-epithelial cell | 1.56e-18 | 15 |
columnar/cuboidal epithelial cell | 3.30e-15 | 7 |
brush border epithelial cell | 7.81e-13 | 6 |
gut absorptive cell | 7.81e-13 | 6 |
enterocyte | 7.81e-13 | 6 |
intestinal crypt stem cell | 2.40e-10 | 3 |
stem cell | 1.60e-07 | 97 |
embryonic cell | 3.02e-07 | 70 |
Ontology term | p-value | n |
---|---|---|
simple columnar epithelium | 4.24e-26 | 11 |
epithelium of mucosa | 2.25e-21 | 9 |
gastrointestinal system epithelium | 2.25e-21 | 9 |
intestinal epithelium | 2.25e-21 | 9 |
intestinal mucosa | 2.30e-14 | 13 |
wall of intestine | 2.30e-14 | 13 |
gastrointestinal system mucosa | 2.30e-14 | 13 |
mucosa | 2.92e-12 | 15 |
unilaminar epithelium | 1.48e-09 | 66 |
organ component layer | 3.86e-07 | 24 |
gut epithelium | 9.68e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
organ system cancer | 4.43e-08 | 6 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.