FFCP PHASE1:Hg19::chr9:113801475..113801496,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=1902|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=3166|TSSclassifier=S|UniProt=|association_with_transcript=29bp_to_uc010mub.2_5end|description=CAGE_peak_23_at_LPAR1_5end|id=chr9:113801475..113801496,-|ontology_enrichment_celltype=CL:0002076!3.01e-07!43|ontology_enrichment_celltype_v019=CL:0002076;1.82e-10;42!CL:0002368;5.85e-09;13!CL:0002621;5.98e-09;3!CL:0000307;1.50e-08;3!CL:0002166;3.65e-08;3!CL:0002159;6.86e-08;14!CL:0002251;1.03e-07;20!CL:0000235;1.18e-07;6|ontology_enrichment_celltype_v019_2=CL:0002076,1.39e-12,42;CL:0002368,3.15e-09,13;CL:0002621,6.05e-09,3;CL:0000068,1.99e-08,3;CL:0000069,1.99e-08,3;CL:0000307,1.99e-08,3;CL:0000377,1.99e-08,3;CL:0002166,2.39e-08,3;CL:0002159,3.46e-08,14;CL:0000223,4.87e-08,58;CL:0002251,1.30e-07,20;CL:0000235,1.71e-07,6|ontology_enrichment_development_v019=CL:0000377;1.50e-08;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:1749;1.71e-08;14|ontology_enrichment_disease_v019_2=DOID:1749,2.07e-08,14|ontology_enrichment_uberon=UBERON:0000062!2.64e-13!511;UBERON:0007023!1.49e-11!115;UBERON:0000468!1.71e-11!659;UBERON:0000467!7.46e-11!625;UBERON:0000480!1.02e-10!626;UBERON:0000922!7.19e-09!612;UBERON:0002050!1.14e-08!605;UBERON:0005423!1.14e-08!605;UBERON:0004119!2.22e-08!169;UBERON:0000925!2.22e-08!169;UBERON:0006595!2.22e-08!169;UBERON:0000923!2.38e-08!604;UBERON:0005291!2.38e-08!604;UBERON:0006598!2.38e-08!604;UBERON:0002532!2.38e-08!604;UBERON:0001007!3.71e-07!155;UBERON:0001555!3.71e-07!155;UBERON:0007026!3.71e-07!155;UBERON:0003102!9.10e-07!95|ontology_enrichment_uberon_v019=UBERON:0000486;5.19e-10;12!UBERON:0003729;1.04e-09;13!UBERON:0002108;1.63e-09;4!UBERON:0000344;1.78e-09;20!UBERON:0003126;2.30e-09;7!UBERON:0001005;2.30e-09;7!UBERON:0000160;3.73e-09;17!UBERON:0001949;5.98e-09;3!UBERON:0001555;6.46e-09;54!UBERON:0005409;1.20e-08;22!UBERON:0000365;1.42e-08;5!UBERON:0004921;3.72e-07;33!UBERON:0005910;3.84e-07;6!UBERON:0003343;6.62e-07;4!UBERON:0004785;6.62e-07;4|ontology_enrichment_uberon_v019_2=UBERON:0004119,2.46e-14,160;UBERON:0000925,2.46e-14,160;UBERON:0006595,2.46e-14,160;UBERON:0001007,1.44e-10,145;UBERON:0001555,1.44e-10,145;UBERON:0007026,1.44e-10,145;UBERON:0003729,1.43e-09,13;UBERON:0002108,2.12e-09,4;UBERON:0003126,2.13e-09,7;UBERON:0001005,2.13e-09,7;UBERON:0000344,2.85e-09,20;UBERON:0000160,4.13e-09,17;UBERON:0001949,6.05e-09,3;UBERON:0000365,1.31e-08,5;UBERON:0005409,2.18e-07,25;UBERON:0005910,3.60e-07,6;UBERON:0002050,9.82e-07,564;UBERON:0003343,9.94e-07,4;UBERON:0004785,9.94e-07,4|phase1_expression=0.363356758541113,0,0.140954404095971,1.0007329835313,0,0,0,0.631719873426831,0.261185628199839,0.245733936501509,2.09340350391728,0,0,0.37129905888014,0.331397375727916,0,0,0,0,0,0,0,0,0,0.125542639594803,0.687720651731561,1.64201178899891,0.865818594450472,0.786728553697808,0.383829398097213,0,0.919421224478927,1.8072355126695,0,0,0,0,0.553995408531877,0.401088894940283,0.651032612147555,2.01523926815932,2.26725566213286,0.77272670290256,0.145398238779565,0.755751887377619,0,0.464858073811369,0.411167888021826,0.619412741790207,0,0.256160706529101,0.236482229888585,0.689491361473237,0.645484683583826,0,0.376484679085209,0.272906150057846,0.224723484445085,0.306083892370903,0,0.639337125799041,0.329851300186716,0,0.852449501065388,0,0,0,0,0.521482918420201,0.217188844705117,0,0,0,1.05627643155971,0.425208599930087,1.46761051855863,1.68492946719743,1.35159203557356,1.76798145366788,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236777252044017,0,0,0,0,0,0,0,0,0,0.289693037921647,0.795285947051099,0,0,0,0,0.458426764241994,0.728590576585084,0.741568885568859,0,0.522389211897802,0.26591592103773,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0,0,0.709336764396714,0,1.06748995729705,0,0,0,0,0,0,0.234321431833797,0,0,0,0.117434498643765,0,0.140450806702248,0.204154171254893,0.245668634623536,0.413303124703062,0,0,0,0,0.168336113954066,0.125118519871964,0.554128230968366,0,0,0.45071417671979,0,0.179389635688862,0,0.635795703478686,0.300091096084402,0.206105058476878,0.257640540045629,1.11670113798954,0,0.487185025805993,0.504867548488229,0.460249493211497,0.161646056818812,0,0.201504196455281,0,1.15956511897978,2.45471508531751,2.58124135850103,0,0,0,0.10366105501537,0,0,0,0.643240938192885,0,0.464367928031979,1.44375896333917,0,0,0,0,0,0,0,0,0,0,0,0.8231480226628,0,0,0,0,0,0.737930631258681,0,1.97550513735526,0,1.20634766893957,3.05541869023148,0,0,0,0.115930404975077,0.469634776943287,0,0,0,0,0,1.23108503043699,0.702012795417713,2.22946743433092,1.87467667973554,1.17587489739202,1.41775097242386,0.806026704325635,0.581267877027924,0,0,0,0,0,0,0,0,0,1.71072446022705,0,0,0,0.224262168690721,0,0,0.258543431515556,0,0,0,0,0.257207374262142,1.41849132023278,0.266422179016099,0,0.542621605391443,0,0,0.355391948742546,0,0.301439377059586,0,0,0,2.00902836572851,2.1083393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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=1902 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3166 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=29bp_to_uc010mub.2_5end | |||
|description=CAGE_peak_23_at_LPAR1_5end | |||
|id=chr9:113801475..113801496,- | |||
|ontology_enrichment_celltype=CL:0002076!3.01e-07!43 | |||
|ontology_enrichment_celltype_v019=CL:0002076;1.82e-10;42!CL:0002368;5.85e-09;13!CL:0002621;5.98e-09;3!CL:0000307;1.50e-08;3!CL:0002166;3.65e-08;3!CL:0002159;6.86e-08;14!CL:0002251;1.03e-07;20!CL:0000235;1.18e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.39e-12,42;CL:0002368,3.15e-09,13;CL:0002621,6.05e-09,3;CL:0000068,1.99e-08,3;CL:0000069,1.99e-08,3;CL:0000307,1.99e-08,3;CL:0000377,1.99e-08,3;CL:0002166,2.39e-08,3;CL:0002159,3.46e-08,14;CL:0000223,4.87e-08,58;CL:0002251,1.30e-07,20;CL:0000235,1.71e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000377;1.50e-08;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1749;1.71e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,2.07e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0000062!2.64e-13!511;UBERON:0007023!1.49e-11!115;UBERON:0000468!1.71e-11!659;UBERON:0000467!7.46e-11!625;UBERON:0000480!1.02e-10!626;UBERON:0000922!7.19e-09!612;UBERON:0002050!1.14e-08!605;UBERON:0005423!1.14e-08!605;UBERON:0004119!2.22e-08!169;UBERON:0000925!2.22e-08!169;UBERON:0006595!2.22e-08!169;UBERON:0000923!2.38e-08!604;UBERON:0005291!2.38e-08!604;UBERON:0006598!2.38e-08!604;UBERON:0002532!2.38e-08!604;UBERON:0001007!3.71e-07!155;UBERON:0001555!3.71e-07!155;UBERON:0007026!3.71e-07!155;UBERON:0003102!9.10e-07!95 | |||
|ontology_enrichment_uberon_v019=UBERON:0000486;5.19e-10;12!UBERON:0003729;1.04e-09;13!UBERON:0002108;1.63e-09;4!UBERON:0000344;1.78e-09;20!UBERON:0003126;2.30e-09;7!UBERON:0001005;2.30e-09;7!UBERON:0000160;3.73e-09;17!UBERON:0001949;5.98e-09;3!UBERON:0001555;6.46e-09;54!UBERON:0005409;1.20e-08;22!UBERON:0000365;1.42e-08;5!UBERON:0004921;3.72e-07;33!UBERON:0005910;3.84e-07;6!UBERON:0003343;6.62e-07;4!UBERON:0004785;6.62e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,2.46e-14,160;UBERON:0000925,2.46e-14,160;UBERON:0006595,2.46e-14,160;UBERON:0001007,1.44e-10,145;UBERON:0001555,1.44e-10,145;UBERON:0007026,1.44e-10,145;UBERON:0003729,1.43e-09,13;UBERON:0002108,2.12e-09,4;UBERON:0003126,2.13e-09,7;UBERON:0001005,2.13e-09,7;UBERON:0000344,2.85e-09,20;UBERON:0000160,4.13e-09,17;UBERON:0001949,6.05e-09,3;UBERON:0000365,1.31e-08,5;UBERON:0005409,2.18e-07,25;UBERON:0005910,3.60e-07,6;UBERON:0002050,9.82e-07,564;UBERON:0003343,9.94e-07,4;UBERON:0004785,9.94e-07,4 | |||
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| |||
|short_description=p23@LPAR1 | |||
}} |
Revision as of 06:57, 14 September 2013
Short description: | p23@LPAR1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_23_at_LPAR1_5end |
Coexpression cluster: | NA |
Association with transcript: | 29bp_to_uc010mub.2_5end |
EntrezGene: | LPAR1 |
HGNC: | 3166 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 1.39e-12 | 42 |
respiratory epithelial cell | 3.15e-09 | 13 |
gingival epithelial cell | 6.05e-09 | 3 |
duct epithelial cell | 1.99e-08 | 3 |
branched duct epithelial cell | 1.99e-08 | 3 |
tracheal epithelial cell | 1.99e-08 | 3 |
tracheoblast | 1.99e-08 | 3 |
epithelial cell of Malassez | 2.39e-08 | 3 |
general ecto-epithelial cell | 3.46e-08 | 14 |
endodermal cell | 4.87e-08 | 58 |
epithelial cell of alimentary canal | 1.30e-07 | 20 |
macrophage | 1.71e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 2.46e-14 | 160 |
endoderm | 2.46e-14 | 160 |
presumptive endoderm | 2.46e-14 | 160 |
digestive system | 1.44e-10 | 145 |
digestive tract | 1.44e-10 | 145 |
primitive gut | 1.44e-10 | 145 |
mouth mucosa | 1.43e-09 | 13 |
small intestine | 2.12e-09 | 4 |
trachea | 2.13e-09 | 7 |
respiratory airway | 2.13e-09 | 7 |
mucosa | 2.85e-09 | 20 |
intestine | 4.13e-09 | 17 |
gingival epithelium | 6.05e-09 | 3 |
urothelium | 1.31e-08 | 5 |
gastrointestinal system | 2.18e-07 | 25 |
transitional epithelium | 3.60e-07 | 6 |
embryonic structure | 9.82e-07 | 564 |
mucosa of oral region | 9.94e-07 | 4 |
respiratory system mucosa | 9.94e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 2.07e-08 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.