FFCP PHASE1:Mm9::chr6:128598890..128598904,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=126|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr6:128598890..128598904,+|id=chr6:128598890..128598904,+|ontology_enrichment_celltype=CL:0002563!8.11e-17!9;CL:0002251!8.11e-17!9;CL:0000239!1.53e-15!6;CL:0000677!1.53e-15!6;CL:0000212!1.53e-15!6;CL:0000584!1.53e-15!6;CL:0000075!3.35e-13!7;CL:0000066!4.20e-10!25;CL:0002076!1.67e-09!15;CL:0000473!1.57e-08!3;CL:0000627!1.57e-08!3;CL:0000682!1.57e-08!3;CL:0000223!9.04e-07!20|ontology_enrichment_celltype_v019_2=CL:0000239,4.83e-25,6;CL:0000677,4.83e-25,6;CL:0000584,4.83e-25,6;CL:0000075,2.11e-21,7;CL:0002563,1.53e-16,9;CL:0002251,1.53e-16,9;CL:0000682,2.91e-13,3;CL:0000066,2.19e-12,25;CL:0002076,1.03e-09,15;CL:0000223,3.80e-07,20|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000160!3.33e-27!43;UBERON:0000344!1.84e-26!15;UBERON:0001242!4.97e-22!13;UBERON:0000060!4.97e-22!13;UBERON:0001262!4.97e-22!13;UBERON:0004786!4.97e-22!13;UBERON:0005409!7.16e-22!59;UBERON:0003350!8.11e-17!9;UBERON:0004808!8.11e-17!9;UBERON:0001277!8.11e-17!9;UBERON:0004923!2.33e-15!24;UBERON:0000485!1.72e-13!11;UBERON:0000331!6.28e-09!3;UBERON:0002116!6.28e-09!3;UBERON:0001204!6.28e-09!3;UBERON:0001168!6.28e-09!3;UBERON:0001007!1.44e-08!128;UBERON:0001555!1.44e-08!128;UBERON:0007026!1.44e-08!128;UBERON:0004119!2.44e-08!130;UBERON:0000925!2.44e-08!130;UBERON:0006595!2.44e-08!130;UBERON:0004921!4.87e-07!126;UBERON:0004185!4.87e-07!126|ontology_enrichment_uberon_v019_2=UBERON:0000344,1.53e-32,15;UBERON:0000160,3.39e-27,31;UBERON:0001242,1.60e-25,13;UBERON:0001262,1.60e-25,13;UBERON:0004786,1.60e-25,13;UBERON:0004923,1.17e-19,24;UBERON:0005409,1.52e-19,47;UBERON:0003350,1.53e-16,9;UBERON:0004808,1.53e-16,9;UBERON:0001277,1.53e-16,9;UBERON:0000331,6.29e-14,3;UBERON:0002116,6.29e-14,3;UBERON:0001204,6.29e-14,3;UBERON:0001168,6.29e-14,3;UBERON:0000485,1.92e-13,11;UBERON:0002108,1.46e-10,4;UBERON:0001962,4.71e-09,2;UBERON:0001961,4.71e-09,2;UBERON:0001744,4.71e-09,2;UBERON:0001007,2.22e-08,116;UBERON:0001555,2.22e-08,116;UBERON:0007026,2.22e-08,116;UBERON:0004119,3.48e-08,118;UBERON:0000925,3.48e-08,118;UBERON:0006595,3.48e-08,118|phase1_expression=0,13.6100408979351,16.8349718574128,29.9439569193762,33.5600139064053,6.5472916045637,7.00837921786577,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,5.11975752938901,8.02932483735095,13.7815671387605,16.3689558540448,9.04979177280734,51.8763935115901,31.2517360902314,23.0599731081517,0,0,0,0.288851619751275,0,0.204169356262369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280888840263504,0,0,0,0,0,0,0,0,0,0,2.96878087269556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.86391761218122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.49565963328025,0,0,0.128867461322093,0,0,0.380451252225118,0.474529061544512,0.658795818896044,1.50801125280162,0.795825888164603,0.779856348476481,1.79763881730844,3.6743468478698,3.18626037206988,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.582961673259701,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0,0,0,0,0,3.24037433229482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0574354689556133,0,0,0.192909220463705,0,0,0,0,0,0,0,0,0.182927972872773,0,0.135804113845862,0,0.237270036248348,0,0,0,0,0,0,0,0,0,0|short_description=p@chr6:128598890..128598904,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=126 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr6:128598890..128598904,+ | |||
|id=chr6:128598890..128598904,+ | |||
|ontology_enrichment_celltype=CL:0002563!8.11e-17!9;CL:0002251!8.11e-17!9;CL:0000239!1.53e-15!6;CL:0000677!1.53e-15!6;CL:0000212!1.53e-15!6;CL:0000584!1.53e-15!6;CL:0000075!3.35e-13!7;CL:0000066!4.20e-10!25;CL:0002076!1.67e-09!15;CL:0000473!1.57e-08!3;CL:0000627!1.57e-08!3;CL:0000682!1.57e-08!3;CL:0000223!9.04e-07!20 | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,4.83e-25,6;CL:0000677,4.83e-25,6;CL:0000584,4.83e-25,6;CL:0000075,2.11e-21,7;CL:0002563,1.53e-16,9;CL:0002251,1.53e-16,9;CL:0000682,2.91e-13,3;CL:0000066,2.19e-12,25;CL:0002076,1.03e-09,15;CL:0000223,3.80e-07,20 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!3.33e-27!43;UBERON:0000344!1.84e-26!15;UBERON:0001242!4.97e-22!13;UBERON:0000060!4.97e-22!13;UBERON:0001262!4.97e-22!13;UBERON:0004786!4.97e-22!13;UBERON:0005409!7.16e-22!59;UBERON:0003350!8.11e-17!9;UBERON:0004808!8.11e-17!9;UBERON:0001277!8.11e-17!9;UBERON:0004923!2.33e-15!24;UBERON:0000485!1.72e-13!11;UBERON:0000331!6.28e-09!3;UBERON:0002116!6.28e-09!3;UBERON:0001204!6.28e-09!3;UBERON:0001168!6.28e-09!3;UBERON:0001007!1.44e-08!128;UBERON:0001555!1.44e-08!128;UBERON:0007026!1.44e-08!128;UBERON:0004119!2.44e-08!130;UBERON:0000925!2.44e-08!130;UBERON:0006595!2.44e-08!130;UBERON:0004921!4.87e-07!126;UBERON:0004185!4.87e-07!126 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,1.53e-32,15;UBERON:0000160,3.39e-27,31;UBERON:0001242,1.60e-25,13;UBERON:0001262,1.60e-25,13;UBERON:0004786,1.60e-25,13;UBERON:0004923,1.17e-19,24;UBERON:0005409,1.52e-19,47;UBERON:0003350,1.53e-16,9;UBERON:0004808,1.53e-16,9;UBERON:0001277,1.53e-16,9;UBERON:0000331,6.29e-14,3;UBERON:0002116,6.29e-14,3;UBERON:0001204,6.29e-14,3;UBERON:0001168,6.29e-14,3;UBERON:0000485,1.92e-13,11;UBERON:0002108,1.46e-10,4;UBERON:0001962,4.71e-09,2;UBERON:0001961,4.71e-09,2;UBERON:0001744,4.71e-09,2;UBERON:0001007,2.22e-08,116;UBERON:0001555,2.22e-08,116;UBERON:0007026,2.22e-08,116;UBERON:0004119,3.48e-08,118;UBERON:0000925,3.48e-08,118;UBERON:0006595,3.48e-08,118 | |||
|phase1_expression=0,13.6100408979351,16.8349718574128,29.9439569193762,33.5600139064053,6.5472916045637,7.00837921786577,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,5.11975752938901,8.02932483735095,13.7815671387605,16.3689558540448,9.04979177280734,51.8763935115901,31.2517360902314,23.0599731081517,0,0,0,0.288851619751275,0,0.204169356262369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280888840263504,0,0,0,0,0,0,0,0,0,0,2.96878087269556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.86391761218122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.49565963328025,0,0,0.128867461322093,0,0,0.380451252225118,0.474529061544512,0.658795818896044,1.50801125280162,0.795825888164603,0.779856348476481,1.79763881730844,3.6743468478698,3.18626037206988,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.582961673259701,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0,0,0,0,0,3.24037433229482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0574354689556133,0,0,0.192909220463705,0,0,0,0,0,0,0,0,0.182927972872773,0,0.135804113845862,0,0.237270036248348,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr6:128598890..128598904,+ | |||
}} |
Revision as of 09:02, 14 September 2013
Short description: | p@chr6:128598890..128598904, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr6:128598890..128598904, + |
Coexpression cluster: | MCL_coexpression_mm9:126 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 4.83e-25 | 6 |
gut absorptive cell | 4.83e-25 | 6 |
enterocyte | 4.83e-25 | 6 |
columnar/cuboidal epithelial cell | 2.11e-21 | 7 |
intestinal epithelial cell | 1.53e-16 | 9 |
epithelial cell of alimentary canal | 1.53e-16 | 9 |
M cell of gut | 2.91e-13 | 3 |
epithelial cell | 2.19e-12 | 25 |
endo-epithelial cell | 1.03e-09 | 15 |
endodermal cell | 3.80e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
mucosa | 1.53e-32 | 15 |
intestine | 3.39e-27 | 31 |
intestinal mucosa | 1.60e-25 | 13 |
wall of intestine | 1.60e-25 | 13 |
gastrointestinal system mucosa | 1.60e-25 | 13 |
organ component layer | 1.17e-19 | 24 |
gastrointestinal system | 1.52e-19 | 47 |
epithelium of mucosa | 1.53e-16 | 9 |
gastrointestinal system epithelium | 1.53e-16 | 9 |
intestinal epithelium | 1.53e-16 | 9 |
ileal mucosa | 6.29e-14 | 3 |
ileum | 6.29e-14 | 3 |
mucosa of small intestine | 6.29e-14 | 3 |
wall of small intestine | 6.29e-14 | 3 |
simple columnar epithelium | 1.92e-13 | 11 |
small intestine | 1.46e-10 | 4 |
gut-associated lymphoid tissue | 4.71e-09 | 2 |
mucosa-associated lymphoid tissue | 4.71e-09 | 2 |
lymphoid tissue | 4.71e-09 | 2 |
digestive system | 2.22e-08 | 116 |
digestive tract | 2.22e-08 | 116 |
primitive gut | 2.22e-08 | 116 |
endoderm-derived structure | 3.48e-08 | 118 |
endoderm | 3.48e-08 | 118 |
presumptive endoderm | 3.48e-08 | 118 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.