FFCP PHASE1:Hg19::chrX:123870918..123870949,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C476|description=CAGE_peak_at_chrX:123870918..123870949,-|id=chrX:123870918..123870949,-|ontology_enrichment_celltype=CL:0000791!3.41e-33!18;CL:0000789!3.41e-33!18;CL:0002420!3.41e-33!18;CL:0002419!3.41e-33!18;CL:0000790!3.41e-33!18;CL:0000084!5.04e-25!25;CL:0000827!5.04e-25!25;CL:0000625!7.81e-24!11;CL:0000838!7.27e-16!52;CL:0000542!1.94e-15!53;CL:0000051!1.94e-15!53;CL:0000624!3.06e-13!6;CL:0000738!1.29e-08!140;CL:0002087!2.07e-08!119;CL:0000898!3.48e-07!3;CL:0000842!4.20e-07!3;CL:0000623!8.25e-07!3;CL:0000825!8.25e-07!3|ontology_enrichment_celltype_v019=CL:0000791;8.60e-57;18!CL:0000789;8.60e-57;18!CL:0002419;8.60e-57;18!CL:0000625;1.29e-50;11!CL:0000084;6.29e-40;25!CL:0000624;3.13e-13;6!CL:0000542;1.70e-10;53|ontology_enrichment_celltype_v019_2=CL:0000791,5.50e-57,18;CL:0000789,5.50e-57,18;CL:0002420,5.50e-57,18;CL:0002419,5.50e-57,18;CL:0000790,5.50e-57,18;CL:0000625,8.27e-51,11;CL:0000084,4.58e-40,25;CL:0000827,4.58e-40,25;CL:0000838,5.83e-20,52;CL:0000542,1.63e-19,53;CL:0000051,1.63e-19,53;CL:0000624,2.95e-13,6;CL:0002087,4.25e-08,115;CL:0000738,2.99e-07,136|ontology_enrichment_development_v019=CL:0000790;8.60e-57;18!CL:0000051;1.70e-10;53|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000178!3.10e-15!15;UBERON:0000179!3.10e-15!15;UBERON:0000463!3.10e-15!15;UBERON:0007023!6.56e-11!115;UBERON:0001049!9.53e-11!57;UBERON:0005068!9.53e-11!57;UBERON:0006241!9.53e-11!57;UBERON:0007135!9.53e-11!57;UBERON:0002616!4.44e-09!59;UBERON:0001869!7.65e-09!32;UBERON:0002020!3.56e-08!34;UBERON:0003528!3.56e-08!34;UBERON:0001893!3.81e-08!34;UBERON:0004177!4.30e-08!7;UBERON:0002791!2.49e-07!33;UBERON:0002780!2.82e-07!41;UBERON:0001890!2.82e-07!41;UBERON:0006240!2.82e-07!41;UBERON:0003080!5.01e-07!42;UBERON:0000955!6.80e-07!69;UBERON:0006238!6.80e-07!69;UBERON:0003075!8.75e-07!86;UBERON:0007284!8.75e-07!86|ontology_enrichment_uberon_v019=UBERON:0002370;2.70e-11;2!UBERON:0005058;2.70e-11;2!UBERON:0009113;2.70e-11;2!UBERON:0000178;1.25e-10;15!UBERON:0000179;1.25e-10;15!UBERON:0000463;1.25e-10;15!UBERON:0002390;1.44e-09;32!UBERON:0004177;1.99e-09;5!UBERON:0005057;1.99e-09;5!UBERON:0002193;5.31e-07;42|ontology_enrichment_uberon_v019_2=UBERON:0002370,4.10e-12,4;UBERON:0005058,4.10e-12,4;UBERON:0009113,4.10e-12,4;UBERON:0003295,4.10e-12,4;UBERON:0005562,4.10e-12,4;UBERON:0004177,1.46e-11,7;UBERON:0005057,1.46e-11,7;UBERON:0000178,1.19e-10,15;UBERON:0000179,1.19e-10,15;UBERON:0000463,1.19e-10,15;UBERON:0003351,3.28e-08,6;UBERON:0001042,4.68e-08,10;UBERON:0009145,4.68e-08,10;UBERON:0006562,2.52e-07,11|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0,0,0.0764134057479513,0.0821005894499457,0,0,0.383829398097213,0.154816123316076,0,0,0,0,0,0,0,0.200544447470142,0.217010870715852,0.223915474239924,0.647787332037959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.90129310341499,2.35806457649499,2.46721798799411,0,0.651844533267181,1.89379122293893,1.94826728407911,0.334231370655521,0.589211814949674,1.10766947291811,1.62482318259009,0,0.130059347559878,0.822189523018381,0.829050053357545,1.44901542867526,10.8249191108304,14.9822863730239,5.22677619024884,1.13309342697566,6.13152789763074,5.49803912772208,8.8556892206826,4.77848121486145,5.85975108470777,3.8018081777935,4.81840381048873,4.35154477925022,4.99722906209383,5.20909954496837,2.46338399076314,3.22570789159572,1.60464117470104,1.88271725047639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.09024169590255,0,0.171567810298526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0.288239906833923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.37921532141349,0.215627574859517,0.898401253958239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.75566460082641,0.431428401637234,0.853820462427555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01489521846434,0.764637207142375,1.70894156152249,0.714695326373367,3.29089818468955,1.94541993357815,0.540031437238115,2.37937552888281,0,0,0,0,0,0.213425530045242,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.38141957765574,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,1.52581736317083,0.552896299656123,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C476 | |||
|description=CAGE_peak_at_chrX:123870918..123870949,- | |||
|id=chrX:123870918..123870949,- | |||
|ontology_enrichment_celltype=CL:0000791!3.41e-33!18;CL:0000789!3.41e-33!18;CL:0002420!3.41e-33!18;CL:0002419!3.41e-33!18;CL:0000790!3.41e-33!18;CL:0000084!5.04e-25!25;CL:0000827!5.04e-25!25;CL:0000625!7.81e-24!11;CL:0000838!7.27e-16!52;CL:0000542!1.94e-15!53;CL:0000051!1.94e-15!53;CL:0000624!3.06e-13!6;CL:0000738!1.29e-08!140;CL:0002087!2.07e-08!119;CL:0000898!3.48e-07!3;CL:0000842!4.20e-07!3;CL:0000623!8.25e-07!3;CL:0000825!8.25e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000791;8.60e-57;18!CL:0000789;8.60e-57;18!CL:0002419;8.60e-57;18!CL:0000625;1.29e-50;11!CL:0000084;6.29e-40;25!CL:0000624;3.13e-13;6!CL:0000542;1.70e-10;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,5.50e-57,18;CL:0000789,5.50e-57,18;CL:0002420,5.50e-57,18;CL:0002419,5.50e-57,18;CL:0000790,5.50e-57,18;CL:0000625,8.27e-51,11;CL:0000084,4.58e-40,25;CL:0000827,4.58e-40,25;CL:0000838,5.83e-20,52;CL:0000542,1.63e-19,53;CL:0000051,1.63e-19,53;CL:0000624,2.95e-13,6;CL:0002087,4.25e-08,115;CL:0000738,2.99e-07,136 | |||
|ontology_enrichment_development_v019=CL:0000790;8.60e-57;18!CL:0000051;1.70e-10;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!3.10e-15!15;UBERON:0000179!3.10e-15!15;UBERON:0000463!3.10e-15!15;UBERON:0007023!6.56e-11!115;UBERON:0001049!9.53e-11!57;UBERON:0005068!9.53e-11!57;UBERON:0006241!9.53e-11!57;UBERON:0007135!9.53e-11!57;UBERON:0002616!4.44e-09!59;UBERON:0001869!7.65e-09!32;UBERON:0002020!3.56e-08!34;UBERON:0003528!3.56e-08!34;UBERON:0001893!3.81e-08!34;UBERON:0004177!4.30e-08!7;UBERON:0002791!2.49e-07!33;UBERON:0002780!2.82e-07!41;UBERON:0001890!2.82e-07!41;UBERON:0006240!2.82e-07!41;UBERON:0003080!5.01e-07!42;UBERON:0000955!6.80e-07!69;UBERON:0006238!6.80e-07!69;UBERON:0003075!8.75e-07!86;UBERON:0007284!8.75e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;2.70e-11;2!UBERON:0005058;2.70e-11;2!UBERON:0009113;2.70e-11;2!UBERON:0000178;1.25e-10;15!UBERON:0000179;1.25e-10;15!UBERON:0000463;1.25e-10;15!UBERON:0002390;1.44e-09;32!UBERON:0004177;1.99e-09;5!UBERON:0005057;1.99e-09;5!UBERON:0002193;5.31e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,4.10e-12,4;UBERON:0005058,4.10e-12,4;UBERON:0009113,4.10e-12,4;UBERON:0003295,4.10e-12,4;UBERON:0005562,4.10e-12,4;UBERON:0004177,1.46e-11,7;UBERON:0005057,1.46e-11,7;UBERON:0000178,1.19e-10,15;UBERON:0000179,1.19e-10,15;UBERON:0000463,1.19e-10,15;UBERON:0003351,3.28e-08,6;UBERON:0001042,4.68e-08,10;UBERON:0009145,4.68e-08,10;UBERON:0006562,2.52e-07,11 | |||
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|short_description=p@chrX:123870918..123870949,- | |||
}} |
Revision as of 10:39, 14 September 2013
Short description: | p@chrX:123870918..123870949, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chrX:123870918..123870949, - |
Coexpression cluster: | C476_thymus_acute_Hodgkin_CD4_CD8_chronic_vein |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 5.50e-57 | 18 |
alpha-beta T cell | 5.50e-57 | 18 |
immature T cell | 5.50e-57 | 18 |
mature T cell | 5.50e-57 | 18 |
immature alpha-beta T cell | 5.50e-57 | 18 |
CD8-positive, alpha-beta T cell | 8.27e-51 | 11 |
T cell | 4.58e-40 | 25 |
pro-T cell | 4.58e-40 | 25 |
lymphoid lineage restricted progenitor cell | 5.83e-20 | 52 |
lymphocyte | 1.63e-19 | 53 |
common lymphoid progenitor | 1.63e-19 | 53 |
CD4-positive, alpha-beta T cell | 2.95e-13 | 6 |
nongranular leukocyte | 4.25e-08 | 115 |
leukocyte | 2.99e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
thymus | 4.10e-12 | 4 |
hemolymphoid system gland | 4.10e-12 | 4 |
thymic region | 4.10e-12 | 4 |
pharyngeal gland | 4.10e-12 | 4 |
thymus primordium | 4.10e-12 | 4 |
hemopoietic organ | 1.46e-11 | 7 |
immune organ | 1.46e-11 | 7 |
blood | 1.19e-10 | 15 |
haemolymphatic fluid | 1.19e-10 | 15 |
organism substance | 1.19e-10 | 15 |
pharyngeal epithelium | 3.28e-08 | 6 |
chordate pharynx | 4.68e-08 | 10 |
pharyngeal region of foregut | 4.68e-08 | 10 |
pharynx | 2.52e-07 | 11 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.