FFCP PHASE1:Mm9::chr6:78416766..78416773,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=219|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr6:78416766..78416773,+|id=chr6:78416766..78416773,+|ontology_enrichment_celltype=CL:0000239!2.37e-23!6;CL:0000677!2.37e-23!6;CL:0000212!2.37e-23!6;CL:0000584!2.37e-23!6;CL:0002563!1.49e-20!9;CL:0002251!1.49e-20!9;CL:0000075!5.94e-20!7;CL:0000066!3.01e-14!25;CL:0000473!7.18e-13!3;CL:0000627!7.18e-13!3;CL:0000682!7.18e-13!3;CL:0002076!5.11e-12!15;CL:0000223!8.28e-09!20|ontology_enrichment_celltype_v019_2=CL:0000682,2.34e-26,3;CL:0000239,6.75e-14,6;CL:0000677,6.75e-14,6;CL:0000584,6.75e-14,6;CL:0000066,1.80e-12,25;CL:0000075,5.26e-12,7;CL:0000473,1.04e-11,7;CL:0002563,1.79e-09,9;CL:0002251,1.79e-09,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000344!1.50e-42!15;UBERON:0001242!5.48e-35!13;UBERON:0000060!5.48e-35!13;UBERON:0001262!5.48e-35!13;UBERON:0004786!5.48e-35!13;UBERON:0004923!9.45e-26!24;UBERON:0003350!1.49e-20!9;UBERON:0004808!1.49e-20!9;UBERON:0001277!1.49e-20!9;UBERON:0000485!1.12e-16!11;UBERON:0000160!1.88e-15!43;UBERON:0000331!4.15e-13!3;UBERON:0002116!4.15e-13!3;UBERON:0001204!4.15e-13!3;UBERON:0001168!4.15e-13!3;UBERON:0005409!1.42e-10!59;UBERON:0001962!3.48e-09!2;UBERON:0001961!3.48e-09!2;UBERON:0001744!3.48e-09!2;UBERON:0001007!1.06e-07!128;UBERON:0001555!1.06e-07!128;UBERON:0007026!1.06e-07!128;UBERON:0004119!1.57e-07!130;UBERON:0000925!1.57e-07!130;UBERON:0006595!1.57e-07!130|ontology_enrichment_uberon_v019_2=UBERON:0000344,1.21e-28,15;UBERON:0001962,2.91e-18,2;UBERON:0001961,2.91e-18,2;UBERON:0001744,2.91e-18,2;UBERON:0004923,7.42e-18,24;UBERON:0001242,2.48e-17,13;UBERON:0001262,2.48e-17,13;UBERON:0004786,2.48e-17,13;UBERON:0000331,3.66e-13,3;UBERON:0002116,3.66e-13,3;UBERON:0001204,3.66e-13,3;UBERON:0001168,3.66e-13,3;UBERON:0002465,1.63e-12,3;UBERON:0002108,4.16e-10,4;UBERON:0003199,4.59e-10,1;UBERON:0003350,1.79e-09,9;UBERON:0004808,1.79e-09,9;UBERON:0001277,1.79e-09,9;UBERON:0000485,7.44e-08,11;UBERON:0000160,2.58e-07,31|phase1_expression=0,2.79180326111489,4.54999239389536,0.30246421130683,0.500895729946347,0.503637815735669,1.86890112476421,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.43993180514066,2.52350209173887,1.14846392823004,1.29228598847722,4.52489588640367,5.51067916423484,0.504060259519861,8.86922042621219,0,0,0,0,0,0.204169356262369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.68510327831436,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.510914110417183,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330418782983798,0.793351699990633,0,0,0,0,0,0,0.474529061544512,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0,0,0,0,0,0,0,0,0,0.163863314715738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100966449948148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr6:78416766..78416773,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=219 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr6:78416766..78416773,+ | |||
|id=chr6:78416766..78416773,+ | |||
|ontology_enrichment_celltype=CL:0000239!2.37e-23!6;CL:0000677!2.37e-23!6;CL:0000212!2.37e-23!6;CL:0000584!2.37e-23!6;CL:0002563!1.49e-20!9;CL:0002251!1.49e-20!9;CL:0000075!5.94e-20!7;CL:0000066!3.01e-14!25;CL:0000473!7.18e-13!3;CL:0000627!7.18e-13!3;CL:0000682!7.18e-13!3;CL:0002076!5.11e-12!15;CL:0000223!8.28e-09!20 | |||
|ontology_enrichment_celltype_v019_2=CL:0000682,2.34e-26,3;CL:0000239,6.75e-14,6;CL:0000677,6.75e-14,6;CL:0000584,6.75e-14,6;CL:0000066,1.80e-12,25;CL:0000075,5.26e-12,7;CL:0000473,1.04e-11,7;CL:0002563,1.79e-09,9;CL:0002251,1.79e-09,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!1.50e-42!15;UBERON:0001242!5.48e-35!13;UBERON:0000060!5.48e-35!13;UBERON:0001262!5.48e-35!13;UBERON:0004786!5.48e-35!13;UBERON:0004923!9.45e-26!24;UBERON:0003350!1.49e-20!9;UBERON:0004808!1.49e-20!9;UBERON:0001277!1.49e-20!9;UBERON:0000485!1.12e-16!11;UBERON:0000160!1.88e-15!43;UBERON:0000331!4.15e-13!3;UBERON:0002116!4.15e-13!3;UBERON:0001204!4.15e-13!3;UBERON:0001168!4.15e-13!3;UBERON:0005409!1.42e-10!59;UBERON:0001962!3.48e-09!2;UBERON:0001961!3.48e-09!2;UBERON:0001744!3.48e-09!2;UBERON:0001007!1.06e-07!128;UBERON:0001555!1.06e-07!128;UBERON:0007026!1.06e-07!128;UBERON:0004119!1.57e-07!130;UBERON:0000925!1.57e-07!130;UBERON:0006595!1.57e-07!130 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,1.21e-28,15;UBERON:0001962,2.91e-18,2;UBERON:0001961,2.91e-18,2;UBERON:0001744,2.91e-18,2;UBERON:0004923,7.42e-18,24;UBERON:0001242,2.48e-17,13;UBERON:0001262,2.48e-17,13;UBERON:0004786,2.48e-17,13;UBERON:0000331,3.66e-13,3;UBERON:0002116,3.66e-13,3;UBERON:0001204,3.66e-13,3;UBERON:0001168,3.66e-13,3;UBERON:0002465,1.63e-12,3;UBERON:0002108,4.16e-10,4;UBERON:0003199,4.59e-10,1;UBERON:0003350,1.79e-09,9;UBERON:0004808,1.79e-09,9;UBERON:0001277,1.79e-09,9;UBERON:0000485,7.44e-08,11;UBERON:0000160,2.58e-07,31 | |||
|phase1_expression=0,2.79180326111489,4.54999239389536,0.30246421130683,0.500895729946347,0.503637815735669,1.86890112476421,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.43993180514066,2.52350209173887,1.14846392823004,1.29228598847722,4.52489588640367,5.51067916423484,0.504060259519861,8.86922042621219,0,0,0,0,0,0.204169356262369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.68510327831436,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.510914110417183,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330418782983798,0.793351699990633,0,0,0,0,0,0,0.474529061544512,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0,0,0,0,0,0,0,0,0,0.163863314715738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100966449948148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr6:78416766..78416773,+ | |||
}} |
Revision as of 10:40, 14 September 2013
Short description: | p@chr6:78416766..78416773, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr6:78416766..78416773, + |
Coexpression cluster: | MCL_coexpression_mm9:219 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
M cell of gut | 2.34e-26 | 3 |
brush border epithelial cell | 6.75e-14 | 6 |
gut absorptive cell | 6.75e-14 | 6 |
enterocyte | 6.75e-14 | 6 |
epithelial cell | 1.80e-12 | 25 |
columnar/cuboidal epithelial cell | 5.26e-12 | 7 |
defensive cell | 1.04e-11 | 7 |
intestinal epithelial cell | 1.79e-09 | 9 |
epithelial cell of alimentary canal | 1.79e-09 | 9 |
Ontology term | p-value | n |
---|---|---|
mucosa | 1.21e-28 | 15 |
gut-associated lymphoid tissue | 2.91e-18 | 2 |
mucosa-associated lymphoid tissue | 2.91e-18 | 2 |
lymphoid tissue | 2.91e-18 | 2 |
organ component layer | 7.42e-18 | 24 |
intestinal mucosa | 2.48e-17 | 13 |
wall of intestine | 2.48e-17 | 13 |
gastrointestinal system mucosa | 2.48e-17 | 13 |
ileal mucosa | 3.66e-13 | 3 |
ileum | 3.66e-13 | 3 |
mucosa of small intestine | 3.66e-13 | 3 |
wall of small intestine | 3.66e-13 | 3 |
lymphoid system | 1.63e-12 | 3 |
small intestine | 4.16e-10 | 4 |
egg chamber | 4.59e-10 | 1 |
epithelium of mucosa | 1.79e-09 | 9 |
gastrointestinal system epithelium | 1.79e-09 | 9 |
intestinal epithelium | 1.79e-09 | 9 |
simple columnar epithelium | 7.44e-08 | 11 |
intestine | 2.58e-07 | 31 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.