FFCP PHASE1:Hg19::chrX:133119895..133119957,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=2719|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=4451|TSSclassifier=S|UniProt=P51654|association_with_transcript=0bp_to_ENST00000370818_5end|coexpression_cluster_id=C55|description=CAGE_peak_2_at_GPC3_5end|id=chrX:133119895..133119957,-|ontology_enrichment_celltype=CL:0000136!1.08e-08!15;CL:0000325!3.00e-08!39|ontology_enrichment_celltype_v019=CL:0000136;5.59e-11;13!CL:0002322;8.86e-08;5|ontology_enrichment_celltype_v019_2=CL:0000136,4.63e-09,15;CL:0002322,8.79e-08,5|ontology_enrichment_development_v019=UBERON:0003104;1.45e-09;31!UBERON:0009117;5.28e-08;10!UBERON:0005564;5.28e-08;10|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!2.96e-16!115;UBERON:0005743!5.86e-12!86;UBERON:0003075!7.10e-12!86;UBERON:0007284!7.10e-12!86;UBERON:0002346!3.49e-11!90;UBERON:0004121!6.63e-11!169;UBERON:0001017!9.61e-11!82;UBERON:0000924!1.57e-10!173;UBERON:0006601!1.57e-10!173;UBERON:0001049!3.49e-10!57;UBERON:0005068!3.49e-10!57;UBERON:0006241!3.49e-10!57;UBERON:0007135!3.49e-10!57;UBERON:0000153!4.18e-10!129;UBERON:0007811!4.18e-10!129;UBERON:0000073!4.47e-10!94;UBERON:0001016!4.47e-10!94;UBERON:0000475!5.88e-10!365;UBERON:0000468!9.71e-10!659;UBERON:0000033!1.21e-09!123;UBERON:0000064!2.52e-09!219;UBERON:0000062!2.64e-09!511;UBERON:0002616!4.00e-08!59;UBERON:0000481!5.42e-08!347;UBERON:0002417!8.88e-08!61;UBERON:0000916!8.88e-08!61;UBERON:0000922!1.31e-07!612;UBERON:0000955!2.34e-07!69;UBERON:0006238!2.34e-07!69;UBERON:0003056!3.88e-07!61|ontology_enrichment_uberon_v019=UBERON:0000922;1.40e-16;49|ontology_enrichment_uberon_v019_2=UBERON:0002417,8.51e-09,60;UBERON:0000916,8.51e-09,60|phase1_expression=6.54042165374004,6.85121676451146,13.6725771973092,4.00293193412522,10.2801051718276,0.872338524100369,20.2639902534648,1.26343974685366,18.0218083457889,0,0,4.58726881473362,0.527533956456907,0,0,0,0,0,0,0.61560529038394,0.204000691244253,0.626909442956176,0,0.136874425072884,0.376627918784408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329851300186716,0,0,0.290209238628584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.473447805734733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,0,2.81297636055767,0,0,0,0,0,0.0945348171640679,1.10864698731282,0.43917392846563,3.86388272718252,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0.112611480483322,0,0,0.183201743930407,0,0,0,0,0,0.132409180813219,0,0.709336764396714,1.68203280042692,0,0,4.97937656639626,0,0.163461903113459,1.21085942115945,0,0.937285727335186,0,0,0,0.587172493218824,0.809364721840658,0.140450806702248,0.204154171254893,0,0,3.56400857184616,11.3742787468136,0,0.718618141816238,0.505008341862199,1.37630371859161,0,4.82875382968922,0.612975591598039,9.314759652209,0.113432183160021,0.358779271377724,0.427114777637135,0,0,0,0,0,0.168776332241266,0,0,0.276149695926898,4.20279747728911,0,0,0,0.193260853163297,0,0,21.3453985726792,38.5661625815522,26.0274432027721,35.5557418702721,32.8017106138317,35.0378264712797,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0,0,0,0,0,2.8810180793198,2.94017422771084,0,0.982827216677626,1.18157981336281,2.6487785964879,29.7632021274335,1.02940686179115,0,0,0,0.370353780634118,0,0,1.44331342025273,1.04337364477569,0.587043471179108,0,0,0,0,0.858486162094873,0,0,0,0,0,0.141775097242386,0,0,0.383382679165211,0,0,0,0.144119953416961,0,0,0,0,1.71072446022705,0,0,0.285826432630578,0.224262168690721,0.43596006883328,0,1.55126058909333,0,0,0,0,0,0,0,1.57275793023962,8.13932408087165,1.64648067356154,0,1.06617584622764,0,2.1100756394171,0,3.29910870900788,1.2162378064119,0,0,0,0,0,0,0,0,0,0,0,0,0.508189248444927,0,1.54657762555539,0.335032530668698,1.27587750330633,0,0,0,0,0,0,0,0,0,0.117141414992713,0.601892199455438,2.27407504055985,0,0.664225598535437,0,0,0.195801157462741,0.343143423810856,0,0,0,0.606255142892519,0,15.4219049598137,2.23297027036899,0.920771839728375,4.2099014164961,4.99742682097234,2.55853624533352,1.12597744800525,1.48418066444991,0,0.177561725313127,0,0,0,21.2712631281255,0,0,0,0,0,1.35359883872224,1.69433741629712,0,1.46139224653261,0.316654886678627,0,0.170093705276516,0,0,0.541892875087706,2.00675909541941,0.254876273045038,1.66215201785745,0,0,0,1.02580050046556,3.60816110269676,0.325378394664303,18.6504231082377,1.37354197227515,0.990113999047056,0,0.650060246036521,0,0.096670718292122,0.308097234229289,0.307007349452259,0.275673144969061,0.107420244868274,0.290033387828457,0,1.4245125703478,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0.372158369359667,0,0,0.255897791311334,0.42793898803392,0,0,0.899362287916574,1.09814811894422,0.235624804691373,0.808729926293264,0,0,0,0,0,0,0,0,0.551365343546124,0,0,0,0,0,0,0,0.573645408816206,0.0982490410131212,0,0,0,0,1.13841952129715,0.699869440489966,0,0,0,19.3936229600165,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,82.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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=2719 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4451 | |||
|TSSclassifier=S | |||
|UniProt=P51654 | |||
|association_with_transcript=0bp_to_ENST00000370818_5end | |||
|coexpression_cluster_id=C55 | |||
|description=CAGE_peak_2_at_GPC3_5end | |||
|id=chrX:133119895..133119957,- | |||
|ontology_enrichment_celltype=CL:0000136!1.08e-08!15;CL:0000325!3.00e-08!39 | |||
|ontology_enrichment_celltype_v019=CL:0000136;5.59e-11;13!CL:0002322;8.86e-08;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,4.63e-09,15;CL:0002322,8.79e-08,5 | |||
|ontology_enrichment_development_v019=UBERON:0003104;1.45e-09;31!UBERON:0009117;5.28e-08;10!UBERON:0005564;5.28e-08;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.96e-16!115;UBERON:0005743!5.86e-12!86;UBERON:0003075!7.10e-12!86;UBERON:0007284!7.10e-12!86;UBERON:0002346!3.49e-11!90;UBERON:0004121!6.63e-11!169;UBERON:0001017!9.61e-11!82;UBERON:0000924!1.57e-10!173;UBERON:0006601!1.57e-10!173;UBERON:0001049!3.49e-10!57;UBERON:0005068!3.49e-10!57;UBERON:0006241!3.49e-10!57;UBERON:0007135!3.49e-10!57;UBERON:0000153!4.18e-10!129;UBERON:0007811!4.18e-10!129;UBERON:0000073!4.47e-10!94;UBERON:0001016!4.47e-10!94;UBERON:0000475!5.88e-10!365;UBERON:0000468!9.71e-10!659;UBERON:0000033!1.21e-09!123;UBERON:0000064!2.52e-09!219;UBERON:0000062!2.64e-09!511;UBERON:0002616!4.00e-08!59;UBERON:0000481!5.42e-08!347;UBERON:0002417!8.88e-08!61;UBERON:0000916!8.88e-08!61;UBERON:0000922!1.31e-07!612;UBERON:0000955!2.34e-07!69;UBERON:0006238!2.34e-07!69;UBERON:0003056!3.88e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0000922;1.40e-16;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002417,8.51e-09,60;UBERON:0000916,8.51e-09,60 | |||
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| |||
|short_description=p2@GPC3 | |||
}} |
Revision as of 10:47, 14 September 2013
Short description: | p2@GPC3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_GPC3_5end |
Coexpression cluster: | C55_hepatocellular_Intestinal_liver_Prostate_fibrosarcoma_Hepatocyte_hepatoblastoma |
Association with transcript: | 0bp_to_ENST00000370818_5end |
EntrezGene: | GPC3 |
HGNC: | 4451 |
UniProt: | P51654 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 4.63e-09 | 15 |
embryonic stem cell | 8.79e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
abdominal segment of trunk | 8.51e-09 | 60 |
abdomen | 8.51e-09 | 60 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.