FFCP PHASE1:Mm9::chr7:20334813..20334891,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=19294|HGNC=|MCL_coexpression_id=24|UniProt=P32507,Q8C6F2,Q80XJ5|association_with_transcript=30bp_to_ENSMUST00000075447,ENSMUST00000108450,NM_001159724,NM_008990,uc009fnd.2,uc009fne.2_5end|description=CAGE_peak_1_at_Pvrl2_5end|id=chr7:20334813..20334891,-|ontology_enrichment_celltype=CL:0000066!1.19e-07!25;CL:0002563!6.30e-07!9;CL:0002251!6.30e-07!9|ontology_enrichment_celltype_v019_2=CL:0000066,1.03e-07,25;CL:0002563,6.27e-07,9;CL:0002251,6.27e-07,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000160!3.76e-16!43;UBERON:0005409!1.04e-15!59;UBERON:0000344!1.09e-10!15;UBERON:0001242!2.02e-09!13;UBERON:0000060!2.02e-09!13;UBERON:0001262!2.02e-09!13;UBERON:0004786!2.02e-09!13;UBERON:0000466!5.63e-09!79;UBERON:0004119!6.04e-09!130;UBERON:0000925!6.04e-09!130;UBERON:0006595!6.04e-09!130;UBERON:0004923!1.73e-08!24;UBERON:0001007!3.66e-08!128;UBERON:0001555!3.66e-08!128;UBERON:0007026!3.66e-08!128;UBERON:0000464!5.90e-08!57;UBERON:0000485!8.60e-08!11;UBERON:0004921!2.18e-07!126;UBERON:0004185!2.18e-07!126;UBERON:0003350!6.30e-07!9;UBERON:0004808!6.30e-07!9;UBERON:0001277!6.30e-07!9|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.93e-16,31;UBERON:0005409,6.68e-15,47;UBERON:0000344,1.08e-10,15;UBERON:0001242,2.00e-09,13;UBERON:0001262,2.00e-09,13;UBERON:0004786,2.00e-09,13;UBERON:0004923,1.71e-08,24;UBERON:0000485,8.54e-08,11;UBERON:0004119,1.37e-07,118;UBERON:0000925,1.37e-07,118;UBERON:0006595,1.37e-07,118;UBERON:0003350,6.27e-07,9;UBERON:0004808,6.27e-07,9;UBERON:0001277,6.27e-07,9;UBERON:0001007,7.21e-07,116;UBERON:0001555,7.21e-07,116;UBERON:0007026,7.21e-07,116;UBERON:0005177,7.92e-07,79|phase1_expression=36.1936394456834,443.896718517267,457.274235586484,241.668904834157,264.472945411671,231.673395238408,163.528848416868,0.516493293766305,0.140788722151667,0,0,0,0,0,1.99865857089398,2.63217847606774,1.39912375625629,0.315462165358238,0,0.42438965179803,18.1142208021779,0.198581902401771,0,93.5955673341429,118.834007592794,331.331843294367,248.549671783786,246.930032658029,82.0901172051535,91.4869371028549,181.81901873735,1.27006134691926,1.84519436275371,0,50.5490334564731,35.7404487520759,53.6965406970031,0.418531630736908,0,0,0,0,0,18.0032449705076,17.8423398946346,41.48156598854,30.5132624295735,17.0059621976748,19.7717564461025,14.5822424305713,7.8392396110203,23.0004102983955,0,0,0,40.9042503297156,29.7994777536307,51.0515371354668,12.9482534950143,9.52183762689659,12.0427966666174,31.1736969503602,19.5644855144451,26.5470416598013,23.7327927016074,23.4458437932213,41.3448152515398,40.7271403640848,10.7837196800817,9.85543349821342,7.99234853135252,16.8534080798244,17.0068776532742,8.08439274818697,7.85932862349538,3.67687514644008,1.10115880999389,3.70293280447044,3.5329502648936,10.9465618816061,13.9061218275663,13.022834263919,4.4669279840221,8.4414391504752,5.19514042441154,12.6690291753677,12.2439645487229,14.911955666024,5.2251073399897,6.42358260907677,68.408019333596,38.7190744641624,10.1995700056163,30.7630819233556,33.7883737072788,59.5875759839456,15.7297750547562,1.02258193546835,0.519572009205738,2.12003744706204,48.4501364031781,1.28326477414318,0,0,31.1747099056148,35.2170213010387,23.25412447068,28.8885215689222,7.50919862576798,33.2510391505207,27.2371963022833,19.1813251336649,26.5207821844467,24.1156224884196,18.8141931417128,38.328310355551,51.6637482564841,15.7613299042704,2.65383165584962,6.14714029800155,3.5334642953663,3.87900202508178,27.9587641827183,2.04946557908083,2.72280718857492,61.0542361948533,0.359445373517761,0.599902730993408,1.14363204365758,3.59497534571574,1.83000241127451,10.178002521142,1.91206752211504,3.3243009452943,3.74018480207208,3.89379031362618,33.0977932513528,7.2156042953854,12.3834151632501,21.0441855886474,20.1686686592191,25.9789378009824,20.8872070574205,15.0704817835715,15.3762488082001,10.249097622788,12.4623293664439,8.79591460512653,15.3053274982318,17.0195472151037,17.7710635405588,22.1387689751851,12.7901734643775,13.9300866608867,14.404749548556,32.6416197582329,1.40442637462647,0.772043721344145,0.852490498186778,25.4764700218667,21.3418714582798,20.8871991294777,20.1233025247429,14.9540816128027,19.7461904495844,13.2544348507732,19.047411499373,16.4639132737709,14.3167069424728,14.9392392311977,11.7549773841491,13.8889988054066,11.6361561104257,15.5679445762031,1.89260953707715,9.98174740079059,95.1606094993338,36.4941781995691,25.5945900642281,22.9914305141834,30.6704557946582,34.0845156613449,33.8014626644203,33.8601614480355,59.7906617546085,40.1865449526587,37.9516165288407,41.3829461845594,40.1626019465388,51.2327062932906,42.1469197255654,53.7681437786791,29.5881925486807,26.1629093876279,45.0830942692322,22.8089487186752,26.7654432291324,27.7036488566758,22.3857341419871,14.7610147979602,9.41992367048249,15.9182341459123,22.8268522857105,13.1807633515714,12.3832166921318,7.42044970870017,8.72298521970563,8.20002343158217,9.42115651591253,15.8232875597946,33.3998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| ||
|EntrezGene=19294 | |||
|HGNC= | |||
|MCL_coexpression_id=24 | |||
|UniProt=P32507,Q8C6F2,Q80XJ5 | |||
|association_with_transcript=30bp_to_ENSMUST00000075447,ENSMUST00000108450,NM_001159724,NM_008990,uc009fnd.2,uc009fne.2_5end | |||
|description=CAGE_peak_1_at_Pvrl2_5end | |||
|id=chr7:20334813..20334891,- | |||
|ontology_enrichment_celltype=CL:0000066!1.19e-07!25;CL:0002563!6.30e-07!9;CL:0002251!6.30e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.03e-07,25;CL:0002563,6.27e-07,9;CL:0002251,6.27e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!3.76e-16!43;UBERON:0005409!1.04e-15!59;UBERON:0000344!1.09e-10!15;UBERON:0001242!2.02e-09!13;UBERON:0000060!2.02e-09!13;UBERON:0001262!2.02e-09!13;UBERON:0004786!2.02e-09!13;UBERON:0000466!5.63e-09!79;UBERON:0004119!6.04e-09!130;UBERON:0000925!6.04e-09!130;UBERON:0006595!6.04e-09!130;UBERON:0004923!1.73e-08!24;UBERON:0001007!3.66e-08!128;UBERON:0001555!3.66e-08!128;UBERON:0007026!3.66e-08!128;UBERON:0000464!5.90e-08!57;UBERON:0000485!8.60e-08!11;UBERON:0004921!2.18e-07!126;UBERON:0004185!2.18e-07!126;UBERON:0003350!6.30e-07!9;UBERON:0004808!6.30e-07!9;UBERON:0001277!6.30e-07!9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.93e-16,31;UBERON:0005409,6.68e-15,47;UBERON:0000344,1.08e-10,15;UBERON:0001242,2.00e-09,13;UBERON:0001262,2.00e-09,13;UBERON:0004786,2.00e-09,13;UBERON:0004923,1.71e-08,24;UBERON:0000485,8.54e-08,11;UBERON:0004119,1.37e-07,118;UBERON:0000925,1.37e-07,118;UBERON:0006595,1.37e-07,118;UBERON:0003350,6.27e-07,9;UBERON:0004808,6.27e-07,9;UBERON:0001277,6.27e-07,9;UBERON:0001007,7.21e-07,116;UBERON:0001555,7.21e-07,116;UBERON:0007026,7.21e-07,116;UBERON:0005177,7.92e-07,79 | |||
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| |||
|short_description=p1@Pvrl2 | |||
}} | |||
Revision as of 12:45, 14 September 2013
| Short description: | p1@Pvrl2 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_1_at_Pvrl2_5end |
| Coexpression cluster: | MCL_coexpression_mm9:24 |
| Association with transcript: | 30bp_to_ENSMUST00000075447, ENSMUST00000108450, NM_001159724, NM_008990, uc009fnd.2, uc009fne.2_5end |
| EntrezGene: | Pvrl2 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| epithelial cell | 1.03e-07 | 25 |
| intestinal epithelial cell | 6.27e-07 | 9 |
| epithelial cell of alimentary canal | 6.27e-07 | 9 |
| Ontology term | p-value | n |
|---|---|---|
| intestine | 2.93e-16 | 31 |
| gastrointestinal system | 6.68e-15 | 47 |
| mucosa | 1.08e-10 | 15 |
| intestinal mucosa | 2.00e-09 | 13 |
| wall of intestine | 2.00e-09 | 13 |
| gastrointestinal system mucosa | 2.00e-09 | 13 |
| organ component layer | 1.71e-08 | 24 |
| simple columnar epithelium | 8.54e-08 | 11 |
| endoderm-derived structure | 1.37e-07 | 118 |
| endoderm | 1.37e-07 | 118 |
| presumptive endoderm | 1.37e-07 | 118 |
| epithelium of mucosa | 6.27e-07 | 9 |
| gastrointestinal system epithelium | 6.27e-07 | 9 |
| intestinal epithelium | 6.27e-07 | 9 |
| digestive system | 7.21e-07 | 116 |
| digestive tract | 7.21e-07 | 116 |
| primitive gut | 7.21e-07 | 116 |
| trunk region element | 7.92e-07 | 79 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
