FFCP PHASE1:Hg19::chr1:32169761..32169776,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1307 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2193 | |||
|TSSclassifier=strong | |||
|UniProt=A6NDR9,Q07092 | |||
|association_with_transcript=0bp_to_ENST00000271069,NM_001856,uc001btk.1,uc001btl.3_5end | |||
|description=CAGE_peak_3_at_COL16A1_5end | |||
|id=chr1:32169761..32169776,- | |||
|ontology_enrichment_celltype=CL:0000055!3.04e-18!180;CL:0000680!6.68e-13!57;CL:0000056!6.68e-13!57;CL:0000355!6.68e-13!57;CL:0000183!9.50e-13!59;CL:0000187!3.91e-12!54;CL:0000192!6.85e-12!42;CL:0000514!6.85e-12!42;CL:0000393!5.86e-11!60;CL:0000211!5.86e-11!60;CL:0000359!4.26e-10!32;CL:0000057!1.86e-08!75 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.23e-09;32!CL:0002368;1.94e-08;13!CL:0002076;3.84e-08;42!CL:0000192;1.08e-07;43!CL:0002159;3.02e-07;14!CL:0000349;9.01e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000680,3.59e-11,58;CL:0000056,3.59e-11,58;CL:0000355,3.59e-11,58;CL:0000192,1.04e-10,43;CL:0000514,1.04e-10,43;CL:0000359,2.79e-10,32;CL:0000187,2.89e-10,55;CL:0002076,4.99e-10,42;CL:0002368,1.65e-08,13;CL:0000393,3.88e-08,61;CL:0000211,3.88e-08,61;CL:0002321,7.44e-08,250;CL:0002159,2.44e-07,14;CL:0000057,6.60e-07,76;CL:0000349,8.23e-07,19 | |||
|ontology_enrichment_development_v019=CL:0000514;1.08e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;7.75e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,8.94e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0000475!7.94e-16!365;UBERON:0000486!9.16e-15!82;UBERON:0000914!1.56e-12!83;UBERON:0002329!1.56e-12!83;UBERON:0003077!1.56e-12!83;UBERON:0003059!1.56e-12!83;UBERON:0007282!1.56e-12!83;UBERON:0009618!1.56e-12!83;UBERON:0007285!1.56e-12!83;UBERON:0000468!9.35e-12!659;UBERON:0002385!1.83e-11!63;UBERON:0001015!1.83e-11!63;UBERON:0000383!1.83e-11!63;UBERON:0001134!2.57e-11!61;UBERON:0002036!2.57e-11!61;UBERON:0003082!2.57e-11!61;UBERON:0004290!5.41e-11!70;UBERON:0003102!1.12e-10!95;UBERON:0000481!2.01e-09!347;UBERON:0005256!2.37e-08!143;UBERON:0000922!2.57e-08!612;UBERON:0000119!4.17e-08!312;UBERON:0000483!4.83e-08!309;UBERON:0002050!1.55e-07!605;UBERON:0005423!1.55e-07!605;UBERON:0000923!2.27e-07!604;UBERON:0005291!2.27e-07!604;UBERON:0006598!2.27e-07!604;UBERON:0002532!2.27e-07!604;UBERON:0002100!2.55e-07!216;UBERON:0000467!3.55e-07!625;UBERON:0004573!4.14e-07!33;UBERON:0004571!4.14e-07!33;UBERON:0004923!4.66e-07!57;UBERON:0000480!4.93e-07!626 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;8.10e-08;33!UBERON:0004571;8.10e-08;33!UBERON:0000486;4.14e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000486,4.26e-13,83;UBERON:0001134,1.21e-09,62;UBERON:0002036,1.21e-09,62;UBERON:0003082,1.21e-09,62;UBERON:0003102,1.37e-09,99;UBERON:0002385,1.62e-09,64;UBERON:0001015,1.62e-09,64;UBERON:0000383,1.62e-09,64;UBERON:0004573,8.93e-09,33;UBERON:0004571,8.93e-09,33;UBERON:0001637,1.22e-08,42;UBERON:0003509,1.22e-08,42;UBERON:0004572,1.22e-08,42;UBERON:0002329,1.26e-08,71;UBERON:0003059,1.26e-08,71;UBERON:0007282,1.26e-08,71;UBERON:0004290,1.26e-08,71;UBERON:0009618,1.26e-08,71;UBERON:0003077,2.46e-08,72;UBERON:0007285,2.46e-08,72;UBERON:0007524,4.69e-08,73;UBERON:0007503,1.08e-07,78;UBERON:0005256,7.84e-07,122 | |||
|phase1_expression=5.26867299884614,1.49870366723688,4.36958652697511,1.0007329835313,3.12872766099101,3.48935409640147,0,0,0.261185628199839,1.72013755551056,0,11.358951350769,15.0347177590219,1.48519623552056,2.31978163009541,0.672325146451775,3.61616716814386,3.65155045193687,4.87932798790507,0.492484232307152,0.612002073732759,0.940364164434263,0.572471974262113,0,0.376627918784408,0.305653622991805,0.328402357799783,0.236132343941038,0,0,0.154816123316076,33.0991640812414,24.3976794210383,24.7735186811748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,1.40648818027883,1.80719576192283,1.50401373190767,3.91085601194224,4.7717156823066,18.0054902011975,0.567208902984407,1.55210578223795,1.22968699970376,0.851363990735132,59.7444272799769,28.9211865371855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22452937262617,0,0,0,0,0,0,50.586910048534,10.4364109856017,3.54565432660823,11.51959873075,9.75244510545967,3.19201543978521,2.24271040056923,13.8773694448616,6.41335625884616,0.311211035399766,1.34710672069688,0.163461903113459,2.72443369760877,3.45705554687999,0,1.87296046098192,0,0.597794722207204,0.587172493218824,0.161872944368132,0.140450806702248,0,0.245668634623536,0.619954687054593,0,0.494533858557114,0,4.31170885089743,0.505008341862199,0,0,0.877955241761676,2.14541457059314,1.35214253015937,1.36118619792025,3.04962380671065,1.70845911054854,1.48352330811693,5.10154863343484,0.618315175430633,6.69865404118636,2.41951913231067,4.72573730275545,1.75386609290158,4.29137416214995,0.644349290496095,0.323292113637624,2.4850671476163,0.906768884048762,1.52604533079439,17.3934767846967,24.0016586119934,14.6270343648392,0.243947412259191,0.662648841607426,0.464775771478074,1.14027160516907,1.51392510525377,1.45990943630332,3.12899064659632,1.92972281457866,0,1.85747171212792,0,0,0,0,0,0,0,0,0,0,0,0,4.5273141246454,5.88034845542168,0,0,0,0,0,0,30.4008290581893,26.9764207818287,14.0740561376283,29.9986562313636,1.3032332212413,0,0,0.231860809950154,2.11335649624479,0,0,0,0,0,0,0,0,10.3107217385455,12.7666417431133,10.3495820986942,16.2996511319184,20.3443756959773,18.0189859207649,0,0,0,0,0,0.063497894292169,0,0,1.71072446022705,0,0,0,1.12131084345361,0,1.24675085895615,17.1931381957844,0,2.535908257668,2.92531928243358,3.12022310734098,1.54324424557285,1.41849132023278,0.532844358032199,0.428933980974443,4.88359444852299,4.93944202068461,0,1.06617584622764,4.75171123760058,0.904318131178758,2.61460037580088,2.49932477955143,0,0,0,4.55287225434007,11.4861935834114,0,2.46128221334885,3.08214483825575,1.07436577943937,0,0,0,0,0,1.30139853857622,0,0.167516265334349,0,0,0,0,1.71768088406796,0.500170521059677,0.813795071099207,3.11956292296211,1.96271887676878,2.68094105557689,6.32563640960651,0,0,1.03473071292505,3.32112799267718,1.47495334833363,0.434418072340414,5.67823356641948,2.74514739048685,0,0,0,4.24378600024763,21.6366071363646,13.9099534931653,6.4508030032882,17.9550508747033,8.13914273855913,6.79137491055215,6.14048698880044,7.72098821489316,8.90508398669946,0.616838775210622,3.19611105563629,0.657017248110473,0.519254429183621,1.27831416305955,0,15.8400111539595,12.2467715284742,1.83703117063371,1.82091168006717,1.18011973463482,0.451199612907412,0.0770153371044148,0,0,0.211103257785751,0,0,0.431831832204279,0,2.43851793789468,1.00337954770971,0,0,0,0,0,0,1.31205858279882,0.976135183992909,0.103041011647722,0,0,16.653700601889,20.8019278731687,3.21367859688319,1.93341436584244,1.23238893691716,0.767518373630648,0.689182862422653,1.82614416276065,0.725083469571143,1.44885266607372,2.1367688555217,18.1813406897076,21.3330974775268,53.7249519602199,22.7605006924987,0,12.9073062200562,3.485186350803,4.92853728281742,3.19383618190213,5.21959795245044,6.11569923042936,4.29374660225974,1.116475108079,0.949138274156178,0.571890581771475,1.79128453917934,0.42793898803392,1.90921948755562,5.49464048139461,1.79872457583315,2.19629623788844,2.5918728516051,3.03273722359974,3.17020642346017,3.79132610615083,5.36397112998549,9.99225307488266,3.16950440270266,0.272999822815972,2.68670320712054,0,3.30819206127675,9.28814565337708,3.5076070820301,1.73632660280006,0.655894752046633,4.05820753925408,2.16876448669825,1.40847801266121,0.860468113224309,2.06322986127554,4.280052617775,0.354761064070598,2.9555068941673,2.30506425071931,0,0.349934720244983,18.4746456432983,27.4823932969673,13.0669181833587,0.376575203107117,50.7996339752051,33.6942951335251,43.4561550465942,30.3234888273186,0,0,0,0,0,0,0,0,1.92283328029452,0,0.980160863924127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,8.61197574414652,0,0.994147647766298,0.140669416410513,0,15.9859757999957,0,0.996239941255349,0.276283915531148,0.251932747854276,0,1.47701766553283,1.55519793830904,0.808815160325942,0,0,0.591860433821602,0,1.1113699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| |||
|short_description=p3@COL16A1 | |||
}} |
Revision as of 17:34, 10 January 2014
Short description: | p3@COL16A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_COL16A1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000271069, NM_001856, uc001btk.1, uc001btl.3_5end |
EntrezGene: | COL16A1 |
HGNC: | 2193 |
UniProt: | A6NDR9Q07092 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle precursor cell | 3.59e-11 | 58 |
myoblast | 3.59e-11 | 58 |
multi-potent skeletal muscle stem cell | 3.59e-11 | 58 |
smooth muscle cell | 1.04e-10 | 43 |
smooth muscle myoblast | 1.04e-10 | 43 |
vascular associated smooth muscle cell | 2.79e-10 | 32 |
muscle cell | 2.89e-10 | 55 |
endo-epithelial cell | 4.99e-10 | 42 |
respiratory epithelial cell | 1.65e-08 | 13 |
electrically responsive cell | 3.88e-08 | 61 |
electrically active cell | 3.88e-08 | 61 |
embryonic cell | 7.44e-08 | 250 |
general ecto-epithelial cell | 2.44e-07 | 14 |
fibroblast | 6.60e-07 | 76 |
extraembryonic cell | 8.23e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
multilaminar epithelium | 4.26e-13 | 83 |
skeletal muscle tissue | 1.21e-09 | 62 |
striated muscle tissue | 1.21e-09 | 62 |
myotome | 1.21e-09 | 62 |
surface structure | 1.37e-09 | 99 |
muscle tissue | 1.62e-09 | 64 |
musculature | 1.62e-09 | 64 |
musculature of body | 1.62e-09 | 64 |
systemic artery | 8.93e-09 | 33 |
systemic arterial system | 8.93e-09 | 33 |
artery | 1.22e-08 | 42 |
arterial blood vessel | 1.22e-08 | 42 |
arterial system | 1.22e-08 | 42 |
somite | 1.26e-08 | 71 |
presomitic mesoderm | 1.26e-08 | 71 |
presumptive segmental plate | 1.26e-08 | 71 |
dermomyotome | 1.26e-08 | 71 |
trunk paraxial mesoderm | 1.26e-08 | 71 |
paraxial mesoderm | 2.46e-08 | 72 |
presumptive paraxial mesoderm | 2.46e-08 | 72 |
dense mesenchyme tissue | 4.69e-08 | 73 |
epithelial vesicle | 1.08e-07 | 78 |
trunk mesenchyme | 7.84e-07 | 122 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 8.94e-08 | 14 |