FFCP PHASE1:Hg19::chr1:155225232..155225284,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10712 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1233 | |||
|TSSclassifier=strong | |||
|UniProt=E9PDD8,P81408,Q96AD8,Q96H71 | |||
|association_with_transcript=0bp_to_ENST00000323361,ENST00000481822,NM_006589,NM_198264,uc001fjm.2,uc001fjn.2,uc001fjo.2,uc001fjp.2,uc001fjq.1_5end | |||
|description=CAGE_peak_1_at_FAM189B_5end | |||
|id=chr1:155225232..155225284,- | |||
|ontology_enrichment_celltype=CL:0000220!1.27e-14!246;CL:0002321!1.45e-14!248;CL:0000066!1.87e-13!254;CL:0000055!3.18e-12!180;CL:0000222!1.36e-11!119;CL:0000183!6.38e-09!59;CL:1000449!5.48e-07!16;CL:0000187!6.85e-07!54 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,2.62e-15,250;CL:0000066,4.30e-13,253;CL:0000222,2.17e-12,121;CL:0000187,2.63e-07,55;CL:0000680,4.29e-07,58;CL:0000056,4.29e-07,58;CL:0000355,4.29e-07,58;CL:0000076,9.29e-07,63 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000119!3.26e-21!312;UBERON:0000483!2.71e-20!309;UBERON:0000475!3.54e-20!365;UBERON:0000481!3.67e-19!347;UBERON:0004111!1.20e-14!241;UBERON:0000477!1.87e-14!286;UBERON:0002100!9.04e-13!216;UBERON:0003104!1.44e-12!238;UBERON:0009142!1.44e-12!238;UBERON:0000025!2.99e-12!194;UBERON:0005256!8.17e-12!143;UBERON:0000064!9.59e-12!219;UBERON:0003914!6.39e-10!118;UBERON:0000923!1.54e-09!604;UBERON:0005291!1.54e-09!604;UBERON:0006598!1.54e-09!604;UBERON:0002532!1.54e-09!604;UBERON:0002050!1.85e-09!605;UBERON:0005423!1.85e-09!605;UBERON:0000922!2.93e-09!612;UBERON:0000486!6.07e-09!82;UBERON:0000914!2.45e-08!83;UBERON:0002329!2.45e-08!83;UBERON:0003077!2.45e-08!83;UBERON:0003059!2.45e-08!83;UBERON:0007282!2.45e-08!83;UBERON:0009618!2.45e-08!83;UBERON:0007285!2.45e-08!83;UBERON:0000924!4.27e-08!173;UBERON:0006601!4.27e-08!173;UBERON:0004290!5.72e-08!70;UBERON:0005177!1.56e-07!107;UBERON:0004121!1.98e-07!169;UBERON:0002049!3.18e-07!79;UBERON:0007798!3.18e-07!79;UBERON:0000468!3.75e-07!659;UBERON:0000055!4.04e-07!69;UBERON:0004211!5.48e-07!16;UBERON:0001285!5.48e-07!16;UBERON:0007684!5.48e-07!16;UBERON:0003220!5.48e-07!16;UBERON:0004208!5.48e-07!16;UBERON:0000490!6.54e-07!138;UBERON:0001981!7.35e-07!60;UBERON:0007500!7.35e-07!60;UBERON:0004537!7.35e-07!60;UBERON:0006965!7.35e-07!60;UBERON:0004872!7.86e-07!84;UBERON:0000480!8.28e-07!626 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000119,1.32e-20,309;UBERON:0000483,1.06e-19,306;UBERON:0004111,8.11e-14,240;UBERON:0003104,6.34e-12,160;UBERON:0009142,6.34e-12,160;UBERON:0002100,6.74e-12,199;UBERON:0000025,1.25e-11,192;UBERON:0007503,5.05e-11,78;UBERON:0005256,9.15e-10,122;UBERON:0003914,1.52e-09,117;UBERON:0000486,2.37e-09,83;UBERON:0000490,9.12e-09,148;UBERON:0003077,1.61e-08,72;UBERON:0007285,1.61e-08,72;UBERON:0002329,2.23e-08,71;UBERON:0003059,2.23e-08,71;UBERON:0007282,2.23e-08,71;UBERON:0004290,2.23e-08,71;UBERON:0009618,2.23e-08,71;UBERON:0007524,2.94e-08,73;UBERON:0000922,9.22e-08,592;UBERON:0004121,1.16e-07,171;UBERON:0000924,1.16e-07,171;UBERON:0006601,1.16e-07,171;UBERON:0002049,2.59e-07,78;UBERON:0007798,2.59e-07,78;UBERON:0000055,3.20e-07,68;UBERON:0007500,5.71e-07,59;UBERON:0001981,5.71e-07,59;UBERON:0004537,5.71e-07,59;UBERON:0006965,5.71e-07,59;UBERON:0005423,5.72e-07,581;UBERON:0005177,6.18e-07,101;UBERON:0004872,6.54e-07,83 | |||
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| |||
|short_description=p1@FAM189B | |||
}} |
Revision as of 21:16, 10 January 2014
Short description: | p1@FAM189B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_FAM189B_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000323361, ENST00000481822, NM_006589, NM_198264, uc001fjm.2, uc001fjn.2, uc001fjo.2, uc001fjp.2, uc001fjq.1_5end |
EntrezGene: | FAM189B |
HGNC: | 1233 |
UniProt: | E9PDD8P81408Q96AD8Q96H71 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 2.62e-15 | 250 |
epithelial cell | 4.30e-13 | 253 |
mesodermal cell | 2.17e-12 | 121 |
muscle cell | 2.63e-07 | 55 |
muscle precursor cell | 4.29e-07 | 58 |
myoblast | 4.29e-07 | 58 |
multi-potent skeletal muscle stem cell | 4.29e-07 | 58 |
squamous epithelial cell | 9.29e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
cell layer | 1.32e-20 | 309 |
epithelium | 1.06e-19 | 306 |
anatomical conduit | 8.11e-14 | 240 |
mesenchyme | 6.34e-12 | 160 |
entire embryonic mesenchyme | 6.34e-12 | 160 |
trunk | 6.74e-12 | 199 |
tube | 1.25e-11 | 192 |
epithelial vesicle | 5.05e-11 | 78 |
trunk mesenchyme | 9.15e-10 | 122 |
epithelial tube | 1.52e-09 | 117 |
multilaminar epithelium | 2.37e-09 | 83 |
unilaminar epithelium | 9.12e-09 | 148 |
paraxial mesoderm | 1.61e-08 | 72 |
presumptive paraxial mesoderm | 1.61e-08 | 72 |
somite | 2.23e-08 | 71 |
presomitic mesoderm | 2.23e-08 | 71 |
presumptive segmental plate | 2.23e-08 | 71 |
dermomyotome | 2.23e-08 | 71 |
trunk paraxial mesoderm | 2.23e-08 | 71 |
dense mesenchyme tissue | 2.94e-08 | 73 |
embryo | 9.22e-08 | 592 |
ectoderm-derived structure | 1.16e-07 | 171 |
ectoderm | 1.16e-07 | 171 |
presumptive ectoderm | 1.16e-07 | 171 |
vasculature | 2.59e-07 | 78 |
vascular system | 2.59e-07 | 78 |
vessel | 3.20e-07 | 68 |
epithelial tube open at both ends | 5.71e-07 | 59 |
blood vessel | 5.71e-07 | 59 |
blood vasculature | 5.71e-07 | 59 |
vascular cord | 5.71e-07 | 59 |
developing anatomical structure | 5.72e-07 | 581 |
trunk region element | 6.18e-07 | 101 |
splanchnic layer of lateral plate mesoderm | 6.54e-07 | 83 |