FFCP PHASE1:Hg19::chr1:242612809..242612816,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=200150 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26879 | |||
|TSSclassifier=strong | |||
|UniProt=Q8N7P1 | |||
|association_with_transcript=-25bp_to_ENST00000427495,NM_001195811,NM_001195812_5end | |||
|coexpression_cluster_id=C11 | |||
|description=CAGE_peak_10_at_PLD5_5end | |||
|id=chr1:242612809..242612816,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006215;7.79e-88;3!UBERON:0003056;3.66e-23;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005743!4.47e-35!86;UBERON:0000073!1.73e-31!94;UBERON:0001016!1.73e-31!94;UBERON:0001049!3.90e-31!57;UBERON:0005068!3.90e-31!57;UBERON:0006241!3.90e-31!57;UBERON:0007135!3.90e-31!57;UBERON:0002616!5.31e-30!59;UBERON:0001017!1.10e-29!82;UBERON:0003075!9.53e-29!86;UBERON:0007284!9.53e-29!86;UBERON:0000955!3.03e-28!69;UBERON:0006238!3.03e-28!69;UBERON:0002346!2.46e-27!90;UBERON:0007023!7.68e-21!115;UBERON:0002780!3.00e-20!41;UBERON:0001890!3.00e-20!41;UBERON:0006240!3.00e-20!41;UBERON:0003080!9.79e-20!42;UBERON:0000033!6.42e-19!123;UBERON:0003056!1.07e-18!61;UBERON:0003296!1.45e-18!4;UBERON:0010133!1.45e-18!4;UBERON:0000153!6.80e-18!129;UBERON:0007811!6.80e-18!129;UBERON:0000007!5.32e-17!2;UBERON:0001950!5.66e-17!20;UBERON:0004733!2.86e-16!12;UBERON:0002028!2.86e-16!12;UBERON:0007277!2.86e-16!12;UBERON:0004121!3.73e-16!169;UBERON:0000924!1.06e-15!173;UBERON:0006601!1.06e-15!173;UBERON:0002619!1.96e-15!22;UBERON:0004732!5.24e-15!13;UBERON:0001869!1.16e-13!32;UBERON:0000956!1.45e-13!25;UBERON:0000203!1.45e-13!25;UBERON:0002791!3.13e-13!33;UBERON:0003076!5.50e-13!15;UBERON:0003057!5.50e-13!15;UBERON:0002020!8.02e-13!34;UBERON:0003528!8.02e-13!34;UBERON:0001893!8.02e-13!34;UBERON:0001896!1.84e-11!3;UBERON:0005290!1.84e-11!3;UBERON:0010096!1.84e-11!3;UBERON:0001894!7.67e-11!7;UBERON:0006222!7.67e-11!7;UBERON:0002298!3.09e-09!8;UBERON:0002022!3.31e-09!1;UBERON:0001282!7.85e-09!1;UBERON:0009842!7.85e-09!1;UBERON:0003704!7.85e-09!1;UBERON:0001171!7.85e-09!1;UBERON:0001172!7.85e-09!1;UBERON:0002680!1.94e-08!9;UBERON:0001895!1.94e-08!9;UBERON:0010092!1.94e-08!9;UBERON:0000025!2.71e-08!194;UBERON:0000966!2.54e-07!5;UBERON:0005388!2.54e-07!5;UBERON:0001802!2.54e-07!5;UBERON:0002021!3.57e-07!5;UBERON:0000064!5.94e-07!219 | |||
|ontology_enrichment_uberon_v019=UBERON:0002037;1.09e-44;6!UBERON:0002680;2.87e-30;9!UBERON:0001895;2.87e-30;9!UBERON:0004733;4.86e-23;12!UBERON:0002028;4.86e-23;12!UBERON:0004732;2.28e-21;13!UBERON:0000966;1.71e-14;5!UBERON:0005388;1.71e-14;5!UBERON:0001802;1.71e-14;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,9.76e-45,6;UBERON:0006215,9.76e-45,6;UBERON:0002680,2.66e-30,9;UBERON:0001895,2.66e-30,9;UBERON:0010092,2.66e-30,9;UBERON:0004733,4.59e-23,12;UBERON:0002028,4.59e-23,12;UBERON:0007277,4.59e-23,12;UBERON:0004732,2.16e-21,13;UBERON:0003076,1.04e-18,15;UBERON:0003057,1.04e-18,15;UBERON:0000966,2.74e-12,6;UBERON:0005388,2.74e-12,6;UBERON:0001802,2.74e-12,6;UBERON:0003075,3.31e-08,82;UBERON:0007284,3.31e-08,82;UBERON:0002346,7.10e-08,86 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325378394664303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222886768554957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,6.08185929621735,1.77328571372128,0.219385397153973,0,0,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126621591911757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.242998226632099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.887432412294818,0.18628920882415,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.319267718114302,0.205116364240755,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0,0,0,0,0.336283722218824,0.606965604236632,0.455324382702595,0,0,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,1.35805433935647,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198950775161368,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0.18378979906969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p10@PLD5 | |||
}} |
Revision as of 01:03, 11 January 2014
Short description: | p10@PLD5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_PLD5_5end |
Coexpression cluster: | C11_cerebellum_medulla_pons_parietal_occipital_middle_medial |
Association with transcript: | -25bp_to_ENST00000427495, NM_001195811, NM_001195812_5end |
EntrezGene: | PLD5 |
HGNC: | 26879 |
UniProt: | Q8N7P1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cerebellum | 9.76e-45 | 6 |
rhombic lip | 9.76e-45 | 6 |
regional part of metencephalon | 2.66e-30 | 9 |
metencephalon | 2.66e-30 | 9 |
future metencephalon | 2.66e-30 | 9 |
segmental subdivision of hindbrain | 4.59e-23 | 12 |
hindbrain | 4.59e-23 | 12 |
presumptive hindbrain | 4.59e-23 | 12 |
segmental subdivision of nervous system | 2.16e-21 | 13 |
posterior neural tube | 1.04e-18 | 15 |
chordal neural plate | 1.04e-18 | 15 |
retina | 2.74e-12 | 6 |
photoreceptor array | 2.74e-12 | 6 |
posterior segment of eyeball | 2.74e-12 | 6 |
neural plate | 3.31e-08 | 82 |
presumptive neural plate | 3.31e-08 | 82 |
neurectoderm | 7.10e-08 | 86 |