FFCP PHASE1:Hg19::chr10:28033530..28033552,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=weak | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C199 | |||
|description=CAGE_peak_at_chr10:28033530..28033552,- | |||
|id=chr10:28033530..28033552,- | |||
|ontology_enrichment_celltype=CL:0000057!1.25e-14!75;CL:0002620!6.10e-12!23;CL:0002552!1.19e-09!5;CL:0000136!1.61e-09!15;CL:0002556!8.29e-08!6;CL:0000055!1.33e-07!180 | |||
|ontology_enrichment_celltype_v019=CL:0000135;1.86e-15;3!CL:0000388;1.86e-15;3!CL:0002620;1.13e-12;23!CL:0002552;5.28e-10;5!CL:0000499;5.89e-10;28!CL:0002556;2.39e-08;6!CL:0000057;4.46e-08;73!CL:0002580;2.12e-07;3!CL:0002622;2.12e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,4.93e-22,76;CL:0000135,1.91e-15,3;CL:0000388,1.91e-15,3;CL:0002620,1.15e-12,23;CL:0002552,4.83e-10,5;CL:0000499,6.13e-10,28;CL:0002556,1.99e-08,6;CL:0002580,1.69e-07,3;CL:0002622,2.06e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:17!2.63e-09!5;DOID:450!2.63e-09!5;DOID:66!2.63e-09!5;DOID:423!2.63e-09!5;DOID:0080000!2.63e-09!5;DOID:11722!2.63e-09!5 | |||
|ontology_enrichment_disease_v019=DOID:3307;1.93e-11;2!DOID:17;7.71e-10;5!DOID:450;7.71e-10;5!DOID:66;7.71e-10;5!DOID:423;7.71e-10;5!DOID:0080000;7.71e-10;5!DOID:11722;7.71e-10;5 | |||
|ontology_enrichment_disease_v019_2=DOID:3307,1.70e-11,2;DOID:17,6.54e-10,5;DOID:450,6.54e-10,5;DOID:66,6.54e-10,5;DOID:423,6.54e-10,5;DOID:0080000,6.54e-10,5;DOID:11722,6.54e-10,5 | |||
|ontology_enrichment_uberon=UBERON:0003102!5.14e-15!95;UBERON:0001758!8.29e-08!6;UBERON:0003672!8.29e-08!6;UBERON:0002097!2.14e-07!40;UBERON:0002199!4.38e-07!45;UBERON:0002416!4.38e-07!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0007846;1.86e-15;3!UBERON:0000043;1.86e-15;3!UBERON:0007845;1.86e-15;3!UBERON:0001758;2.39e-08;6!UBERON:0003672;2.39e-08;6!UBERON:0011137;9.56e-08;11!UBERON:0010323;9.56e-08;11!UBERON:0002367;2.51e-07;11!UBERON:0010147;2.51e-07;11!UBERON:0003129;3.27e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,8.07e-16,99;UBERON:0007846,1.91e-15,3;UBERON:0000043,1.91e-15,3;UBERON:0007845,1.91e-15,3;UBERON:0001758,1.99e-08,6;UBERON:0003672,1.99e-08,6;UBERON:0002097,2.51e-08,41;UBERON:0000165,5.82e-08,29;UBERON:0000930,5.82e-08,29;UBERON:0010323,8.37e-08,11;UBERON:0000161,8.76e-08,36;UBERON:0003129,2.79e-07,7;UBERON:0002367,2.89e-07,11;UBERON:0010147,2.89e-07,11;UBERON:0009846,2.89e-07,11;UBERON:0003353,2.89e-07,11;UBERON:0004902,2.89e-07,11;UBERON:0003820,2.89e-07,11;UBERON:0009847,2.89e-07,11;UBERON:0002199,2.92e-07,46;UBERON:0002416,2.92e-07,46 | |||
|phase1_expression=0.363356758541113,0.642301571672949,0.281908808191942,5.00366491765652,0.446961094427288,0.872338524100369,0,0,0.522371256399677,0,0,0,0,0,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44575660953827,0,1.15877215168659,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0.323745888736263,0,0.408308342509787,0.491337269247072,1.44656093646072,5.94001428641027,6.18167323196392,0,0,0,0.625592599359821,0.277064115484183,4.38977620880838,1.83892677479412,5.55880817954408,0,0.358779271377724,2.98980344345994,2.96704661623387,0.300091096084402,2.26715564324566,1.8034837803194,2.04728541964749,0,0.292311015483596,0.757301322732344,1.74894807420369,0,1.06502877754984,0.10075209822764,1.18692414617341,0,0,0,0,0,0,0,0,0,0,1.92972281457866,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.790204397959275,0.858486162094873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.39344304926383,4.16029747645464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.271265023699736,0,0.892144943985809,0.630809660135739,0,0,0,0,0,0.368738337083406,1.47702144595741,0,0,0,0,0,0,0,0,0,1.38115775959256,1.96462066103151,0,5.11707249066703,0,0,0,0,0,0,0,0,0,0,1.37777337797528,0.182091168006717,1.70461739447251,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137836572484531,0,0.145016693914229,0.0852266274161009,0.178064071293475,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0.255897791311334,0,0,0,0,0,0,0,0,0,0,0,0,2.32049849393576,0.141405431953713,0,0,0,0,0,0,0,0,0,0,0,0,0,0.844430541190656,0.658589785919804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,2.22617410045812,0,0,0.398495976502139,0.552567831062295,0,0,0,0,0,0,0,0.394573622547734,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0,0,0,0,0,0.21787692703798,0.41827123283581,0.230850775511391,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0,3.0957485844891,0,0,0,0.193978032976839,0,0.225980740780532,0,0,0.0633107959558787,0,0,0.426905989478705,0,0,0,0,0,0.248505071130865,0.471388069233591,28.6757874815326,17.1548667952226,0,0,0,0,0,0,0,0,0,0,0,0,0.223171457441873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.13223260174269,0,0,0,0,0.414239055347196,0,0,0,0,0,0,0.306345576763462,0,0,0,0,0,0,0.110929051536852,0.310482014706917,0,0,0,0,0,0,0,0,0,0,0,0.251567901752575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343395705182793,0.336749488765919,0,0,0,0,0,0,0,0,0,0.219284049578707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.558644917973244,0,0,0,3.17408349321616,0.3062454773532,0,0,0,0,0,0,0,0,0,0.235939446695481,0,0,0,0,0.198916222116275,0.150420656698515,0,0,0,0.327543835020193,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02041020705668,0,0,0,0,0,0.214429632529969,0,0,0,2.40513409419076,0,0,0,0,0,0.0852134047591577,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0.33883824611688,0,0,0,0,0,0.735444965261716,0,0,0.297046400327086,0,2.0391253762538,0,0,0,0.178553938605658,0,0,0,0,0,0,0,0,0.5290268405154,2.97596014533401,1.38652688589425,1.29787968637137,0,0,0,0,0,0,0,0,0,0,0,0,0.23806443146374,0,0,0.448527450322454,0,0,0,0,0,0,0.332660356546013,0.162806537221949,1.28072815053259,3.8614456457388,0,0,0.122241444182866,0.406896178315738,0,0.402547587182052,0 | |||
|short_description=p@chr10:28033530..28033552,- | |||
}} |
Revision as of 02:18, 11 January 2014
Short description: | p@chr10:28033530..28033552, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr10:28033530..28033552, - |
Coexpression cluster: | C199_glioblastoma_B_osteosarcoma_Fibroblast_heart_rhabdomyosarcoma_myxofibrosarcoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.93e-22 | 76 |
fibrocyte | 1.91e-15 | 3 |
tendon cell | 1.91e-15 | 3 |
skin fibroblast | 1.15e-12 | 23 |
fibroblast of gingiva | 4.83e-10 | 5 |
stromal cell | 6.13e-10 | 28 |
fibroblast of periodontium | 1.99e-08 | 6 |
preadipocyte of the breast | 1.69e-07 | 3 |
prostate stromal cell | 2.06e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
surface structure | 8.07e-16 | 99 |
dense regular connective tissue | 1.91e-15 | 3 |
tendon | 1.91e-15 | 3 |
regular connective tissue | 1.91e-15 | 3 |
periodontium | 1.99e-08 | 6 |
dentition | 1.99e-08 | 6 |
skin of body | 2.51e-08 | 41 |
mouth | 5.82e-08 | 29 |
stomodeum | 5.82e-08 | 29 |
cranial skeletal system | 8.37e-08 | 11 |
orifice | 8.76e-08 | 36 |
skull | 2.79e-07 | 7 |
prostate gland | 2.89e-07 | 11 |
male accessory sex gland | 2.89e-07 | 11 |
embryonic cloacal epithelium | 2.89e-07 | 11 |
epithelium of hindgut | 2.89e-07 | 11 |
urogenital sinus epithelium | 2.89e-07 | 11 |
prostate bud | 2.89e-07 | 11 |
prostate field | 2.89e-07 | 11 |
integument | 2.92e-07 | 46 |
integumental system | 2.92e-07 | 46 |
Ontology term | p-value | n |
---|---|---|
teratoma | 1.70e-11 | 2 |
musculoskeletal system disease | 6.54e-10 | 5 |
myotonic disease | 6.54e-10 | 5 |
muscle tissue disease | 6.54e-10 | 5 |
myopathy | 6.54e-10 | 5 |
muscular disease | 6.54e-10 | 5 |
myotonic dystrophy | 6.54e-10 | 5 |