FFCP PHASE1:Hg19::chr10:126138597..126138612,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=390010 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=31652 | |||
|TSSclassifier=strong | |||
|UniProt=G3V2X8,Q9UD57 | |||
|association_with_transcript=-47bp_to_ENST00000440536,NM_001146340,uc010quf.1_5end | |||
|coexpression_cluster_id=C196 | |||
|description=CAGE_peak_1_at_NKX1-2_5end | |||
|id=chr10:126138597..126138612,- | |||
|ontology_enrichment_celltype=CL:0002076!3.82e-14!43;CL:0000066!4.52e-14!254;CL:0000223!2.02e-13!59;CL:0002322!1.28e-11!5;CL:0002251!8.47e-09!21;CL:0002166!9.05e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002322;8.49e-30;5!CL:0002321;8.65e-10;15!CL:0000540;1.20e-09;6!CL:0000404;1.20e-09;6!CL:0000039;1.70e-08;7!CL:0000586;1.70e-08;7!CL:1001319;8.92e-07;1!CL:1000600;8.92e-07;1!CL:0000313;8.92e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,8.49e-30,5;CL:0000540,1.18e-09,6;CL:0000031,1.18e-09,6;CL:0000404,1.18e-09,6;CL:0000066,5.04e-09,253;CL:0000039,1.70e-08,7;CL:0000586,1.70e-08,7;CL:0000047,2.42e-07,8;CL:0000313,9.18e-07,1 | |||
|ontology_enrichment_development_v019=UBERON:0009117;1.07e-14;10!UBERON:0005564;1.07e-14;10!CL:0000031;1.20e-09;6 | |||
|ontology_enrichment_disease_v019=DOID:3151;3.82e-07;1!DOID:3149;3.82e-07;1!DOID:2152;8.92e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.87e-10,106;DOID:0050687,5.29e-08,143;DOID:3151,3.82e-07,1;DOID:3149,3.82e-07,1;DOID:2152,9.18e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0001017!2.29e-08!82;UBERON:0000033!4.73e-08!123;UBERON:0005743!1.07e-07!86;UBERON:0001893!2.28e-07!34;UBERON:0000153!2.56e-07!129;UBERON:0007811!2.56e-07!129;UBERON:0000924!4.16e-07!173;UBERON:0006601!4.16e-07!173;UBERON:0004121!5.80e-07!169;UBERON:0000955!6.13e-07!69;UBERON:0006238!6.13e-07!69 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;1.75e-07;8!UBERON:0000991;7.34e-07;21!UBERON:0004645;8.92e-07;1!UBERON:0004911;8.92e-07;1!UBERON:0001256;8.92e-07;1!UBERON:0001259;8.92e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,1.75e-07,8;UBERON:0000991,7.43e-07,21;UBERON:0009196,7.43e-07,21;UBERON:0009117,7.43e-07,21;UBERON:0005564,7.43e-07,21;UBERON:0004911,9.18e-07,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290209238628584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.312160076830321,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.57978255948989,0.818238361772504,0.573609190778008,12.1973706129595,13.5180363687915,10.4574548582567,5.80501908086074,10.0928340350251,5.10968302706162,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.860919069801795,0,5.81676512665715,0,0.100528972411631,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,1.87467667973554,0.671928512795438,0.425325291727159,0,0.290633938513962,1.53353071666084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,6.41620704970512,0.184161977871793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574265537996172,2.60024098414608,0,0,0,0,0,0,0,0,0,0,0.192190067365106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288666338176536,0,0,0,0,0,0,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0.735120647943095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,1.22722419002586,0,0,0.0898683511473268,0,0,0,0,0,0.969332746095218,0,0,0,0,0,12.4034858631195,9.40738506083235,0,0,0,0,0,0,0,0.110579259931225,0,0,0,1.25481369850743,0.0769502585037971,0,0,0,0,0,0.549585560411174,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0.141353071433941,0,0,0,0,0,0,0,0.134802265961354,0,0,0,0.586993856796269,0.242780379534093,0,0,0,0,0.150323419414493,0.311064574191741,0,0,0.313932918407225,0,0.284609546029793,0,5.0332324117188,0.195984794828755,2.69883540399248,0,0,0,0,0,0,0,0,0,0,0,0,0.64127056201227,0,0,2.01726584015748,0.229073192331831,3.60349495510126,0,0,0,0,0,0.305994652908965,0,0,0.136905378891993,0,0,0,0,0,0,0.199679000498991,0,0,0,0,2.32991899054908,0,0,0,0.0984274815147488,0,0,0.136203406111576,25.077491160543,13.6164042231261,8.3088067605837,0,0,0,5.70238968918752,0,0,0,0,2.87872795979168,0,0,0,0,0,0,0,0,0,0,0,0,0.258565912723101,0,0.513260513652988,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0.1251909307065,0,0.110929051536852,0,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0.0642292250964595,0,0.319267718114302,0.41023272848151,0,0.0691572524642179,0.322951291263702,0,0,0.11796972334774,0.917142992608395,0.346576998451015,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0.620060389503552,0.0634158101939068,0,0,0,0,2.55524855279191,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.158013611732727,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23040974977572,0,0,0,0,0,0,0,0.198950775161368,0,0,0,0,0.0771741581079447,0.218559560503957,0,0,0,0,0,1.2679671827502,0,0,0,0,0.178553938605658,0.352894871715692,0,0,0,0.143339583151451,7.73080654746605,0.135982980381829,0,0,0,0,0,3.28032704571205,1.09265571963696,0.886889507080059,49.3625935951192,26.9889579318216,28.5793137553368,0.752122617877125,0,0,0,0,0,0,0,0,0,0,0,0.217716747896961,0,0,0,0,1.13964576055364,0,0,0,0,0,0,0,0,0 | |||
|short_description=p1@NKX1-2 | |||
}} |
Revision as of 05:27, 11 January 2014
Short description: | p1@NKX1-2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_NKX1-2_5end |
Coexpression cluster: | C196_testicular_iPS_H9_teratocarcinoma_HES3GFP_choriocarcinoma_endometrial |
Association with transcript: | -47bp_to_ENST00000440536, NM_001146340, uc010quf.1_5end |
EntrezGene: | NKX1-2 |
HGNC: | 31652 |
UniProt: | G3V2X8Q9UD57 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 8.49e-30 | 5 |
neuron | 1.18e-09 | 6 |
neuroblast | 1.18e-09 | 6 |
electrically signaling cell | 1.18e-09 | 6 |
epithelial cell | 5.04e-09 | 253 |
germ line cell | 1.70e-08 | 7 |
germ cell | 1.70e-08 | 7 |
neuronal stem cell | 2.42e-07 | 8 |
serous secreting cell | 9.18e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
testis | 1.75e-07 | 8 |
gonad | 7.43e-07 | 21 |
indifferent external genitalia | 7.43e-07 | 21 |
indifferent gonad | 7.43e-07 | 21 |
gonad primordium | 7.43e-07 | 21 |
epithelium of female gonad | 9.18e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.87e-10 | 106 |
cell type cancer | 5.29e-08 | 143 |
skin squamous cell carcinoma | 3.82e-07 | 1 |
keratoacanthoma | 3.82e-07 | 1 |
ovary epithelial cancer | 9.18e-07 | 1 |