FFCP PHASE1:Hg19::chr15:56207597..56207614,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4734 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7727 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-23bp_to_AK307541_5end | |||
|description=CAGE_peak_4_at_NEDD4_5end | |||
|id=chr15:56207597..56207614,- | |||
|ontology_enrichment_celltype=CL:0000055!7.69e-35!180;CL:0000057!3.92e-22!75;CL:0000548!2.55e-14!679;CL:0000004!2.55e-14!679;CL:0000255!2.55e-14!679;CL:0000012!6.66e-14!682;CL:0000680!6.92e-12!57;CL:0000056!6.92e-12!57;CL:0000355!6.92e-12!57;CL:0002620!5.36e-11!23;CL:0000144!1.66e-10!625;CL:0000187!3.69e-10!54;CL:0002371!7.74e-10!591;CL:0000003!7.96e-10!722;CL:0000393!4.24e-09!60;CL:0000211!4.24e-09!60;CL:0000183!8.44e-09!59;CL:0000048!1.74e-08!430;CL:0000723!4.91e-08!436;CL:0000034!3.53e-07!444;CL:0000222!4.28e-07!119;CL:0000220!6.34e-07!246 | |||
|ontology_enrichment_celltype_v019=CL:0002620;2.32e-09;23!CL:0000057;7.27e-08;73!CL:0000680;3.94e-07;7!CL:0000723;6.02e-07;61!CL:0002320;7.51e-07;188 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,9.78e-18,76;CL:0000048,4.14e-10,427;CL:0000723,1.36e-09,433;CL:0000680,1.92e-09,58;CL:0000056,1.92e-09,58;CL:0000355,1.92e-09,58;CL:0002620,3.26e-09,23;CL:0000034,6.23e-09,441;CL:0000187,1.85e-07,55 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!7.88e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;3.78e-10;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.84e-10,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!1.22e-20!83;UBERON:0002329!1.22e-20!83;UBERON:0003077!1.22e-20!83;UBERON:0003059!1.22e-20!83;UBERON:0007282!1.22e-20!83;UBERON:0009618!1.22e-20!83;UBERON:0007285!1.22e-20!83;UBERON:0004290!2.75e-15!70;UBERON:0000486!1.21e-14!82;UBERON:0005256!1.23e-12!143;UBERON:0003102!2.36e-12!95;UBERON:0001134!9.65e-12!61;UBERON:0002036!9.65e-12!61;UBERON:0003082!9.65e-12!61;UBERON:0002385!6.31e-11!63;UBERON:0001015!6.31e-11!63;UBERON:0000383!6.31e-11!63;UBERON:0002100!3.17e-10!216;UBERON:0000475!5.04e-10!365;UBERON:0002199!1.67e-09!45;UBERON:0002416!1.67e-09!45;UBERON:0003104!8.97e-09!238;UBERON:0009142!8.97e-09!238;UBERON:0002097!3.83e-08!40;UBERON:0000481!3.59e-07!347;UBERON:0000075!5.77e-07!13;UBERON:0005944!5.77e-07!13;UBERON:0004288!5.77e-07!13;UBERON:0003089!5.77e-07!13 | |||
|ontology_enrichment_uberon_v019=UBERON:0002385;7.83e-09;31!UBERON:0001015;7.83e-09;31!UBERON:0000383;7.83e-09;31!UBERON:0002097;2.31e-07;41!UBERON:0002199;2.93e-07;46!UBERON:0002416;2.93e-07;46!UBERON:0002118;3.07e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,3.57e-13,73;UBERON:0002329,7.66e-13,71;UBERON:0003059,7.66e-13,71;UBERON:0007282,7.66e-13,71;UBERON:0004290,7.66e-13,71;UBERON:0009618,7.66e-13,71;UBERON:0003077,1.60e-12,72;UBERON:0007285,1.60e-12,72;UBERON:0003102,2.02e-12,99;UBERON:0002199,1.04e-11,46;UBERON:0002416,1.04e-11,46;UBERON:0000486,3.61e-11,83;UBERON:0007503,8.54e-11,78;UBERON:0002097,1.49e-09,41;UBERON:0001134,4.41e-09,62;UBERON:0002036,4.41e-09,62;UBERON:0003082,4.41e-09,62;UBERON:0005256,1.25e-08,122;UBERON:0002385,1.46e-08,64;UBERON:0001015,1.46e-08,64;UBERON:0000383,1.46e-08,64;UBERON:0002118,2.32e-07,5;UBERON:0003104,3.96e-07,160;UBERON:0009142,3.96e-07,160;UBERON:0000490,4.39e-07,148 | |||
|phase1_expression=2.90685406832891,3.42560838225573,2.53717927372748,3.00219895059391,2.23480547213644,0,2.53299878168311,1.26343974685366,0,0,0,0,0,1.36142988256051,0.994192127183747,2.01697543935533,2.41077811209591,1.46062018077475,1.95173119516203,0.123121058076788,0.204000691244253,0,0,0.547497700291537,0,0,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01210257911091,0.383587685530591,0.361439152384566,0,0,0,0,0,0.443458794925128,0,0,0,0,0,0,0,0,0,0,0.198762407366705,0.860234595106124,0,0,0,0,0,0.258416759169329,0.35576626268671,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.96366342034382,0.886413581652058,2.25095607382472,0.286836620748814,0.354668382198357,1.12135520028461,1.06748995729705,0.74000264525148,2.48968828319813,0.67355336034844,0.817309515567294,0.756787138224657,3.45705554687999,0,3.1216007683032,2.2818872861778,0.896692083310806,1.29177948508141,2.10434827678571,2.94946694074722,3.26646674007829,1.96534907698829,1.54988671763648,0,0.494533858557114,0,0,1.85169725349473,0.875829639103749,7.48073111807294,6.58466431321257,2.45190236639216,1.20190447125277,1.24775401476023,2.51145489964407,0.640672166455702,0.847727604638247,2.10063767259082,1.75189299705346,2.31876486041066,0.37223371266318,4.05063197379039,1.65642908774038,2.27190396819703,0.920498986422993,0,2.13005755509969,1.20902517873168,0.339121184620975,0.386521706326594,1.36373060295417,2.86804595389004,0,0,0,0,0,0,1.56449532329816,1.92972281457866,0,5.10804720835177,2.16563844500876,1.18306800039844,0.505754070234305,0.723033089650446,1.21323370005633,1.74303555273925,0.71181185733329,1.21348177344148,0.196221465125346,0,0,0,0,0,0,0,0,0,0,0.686271241194102,0,0,0,0.0925884451585296,0.651616610620649,0,0,0.463721619900307,0.352226082707465,0,0,0,0,0,0,0,0,1.87467667973554,0.335964256397719,0.708875486211932,0.179117045405697,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0.224262168690721,0,0.66004457238855,1.42198887333556,0,2.535908257668,0,0,0,0,0.532844358032199,2.00169191121407,2.17048642156577,0.823240336780769,1.62868092146868,2.84313558994037,3.16780749173372,6.33022691825131,4.35766729300147,3.99891964728228,0,0,0,2.63587341040741,1.14861935834114,0,4.92256442669769,1.43833425785268,11.4599016473533,0,0,0,0,0,0,0.773288812777695,0.167516265334349,0,0,0,0,0.24538298343828,0.500170521059677,0.813795071099207,0.831883446123229,5.70972764150918,5.36188211115378,3.5142424497814,3.61135319673263,2.27407504055985,1.03473071292505,1.32845119707087,0.553107505625109,0.955719759148911,0,0,0,0,0,0,0,0.30239029332968,0.992431231275107,8.74733247741956,1.96462066103151,0.640695746278505,1.53512174720011,0.965123526861645,0,1.54209693802656,1.42049380250502,2.54594183642808,2.59627214591811,1.62694529843943,0,0,0,1.7222167224691,2.73136752010076,1.83574180943194,0,0.462092022626489,0,0,0,0,0.170093705276516,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183138929636687,0.577566499444116,0,1.30012049207304,3.21367859688319,0.48335359146061,1.07834031980251,0.921022048356777,4.13509717453592,3.75970857038958,2.75531718437034,2.89770533214743,1.51354460599453,0.330569830721956,0.192190067365106,0.638063562472921,0,1.85938219718914,4.09256050879832,0.6970372701606,0,0,0,1.11194531462352,0.286249773483982,1.48863347743867,3.48017367190598,3.43134349062885,0.255897791311334,1.71175595213568,0,0,2.69808686374972,0.823611089208164,1.17812402345686,0.202182481573316,0,0,0.48763373908959,1.21856744815642,0,0.136499911407986,1.27264888758341,0,0,1.32687795048244,0.438450885253763,0.578775534266688,0,0.405820753925408,0,0.281695602532241,3.01163839628508,1.27723753317057,0,0.354761064070598,0.633322905892992,0,0,0.349934720244983,1.25088746543166,0.670302275535787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0.121360521749513,0,0,0,0,0,0,0,2.44879151050393,0,0,0,0,0,6.44292699763575,0,4.0435146396035,0.0898683511473268,0,0,0,0,13.3364388173564,0,0,0,0,0,0,0,0,0.236387681767936,0,0,0,0,0,0,0.110579259931225,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210998064528027,0,0,0,0,0,0,0,0,0,0,0.802577647298789,0,0,0,0,0,0,0,0.505492637027904,0,0,0,0.661983911750998,0,0,0,1.10939738410511,0,0,1.39294730528644,0,6.53546923392143,0.483781656445426,0,0.492692742319255,0,0.706049013532002,0,0,2.58328995213887,0,0,0,0,0,0,0,0.171594997861965,0,4.22458620922471,0,2.71808412147228,2.71967400412066,2.44795722327172,2.88950589901519,0,0,0,0,0,0,0,0,0,0,0,0,2.88239906833923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236417121897595,0,1.90080605734932,0,0,0,0,0.25426853765475,0,0.864221491201268,0,0,0,1.36310417428337,0,0.146552233678082,0,0,0,2.22412889249628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,2.08956724041624,1.16856654923612,0,6.06089616880285,1.25783950876288,0.889811221596536,0.686520205190771,0.302461847526478,0.932623203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| |||
|short_description=p4@NEDD4 | |||
}} |
Revision as of 23:42, 11 January 2014
Short description: | p4@NEDD4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_NEDD4_5end |
Coexpression cluster: | NA |
Association with transcript: | -23bp_to_AK307541_5end |
EntrezGene: | NEDD4 |
HGNC: | 7727 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 9.78e-18 | 76 |
multi fate stem cell | 4.14e-10 | 427 |
somatic stem cell | 1.36e-09 | 433 |
muscle precursor cell | 1.92e-09 | 58 |
myoblast | 1.92e-09 | 58 |
multi-potent skeletal muscle stem cell | 1.92e-09 | 58 |
skin fibroblast | 3.26e-09 | 23 |
stem cell | 6.23e-09 | 441 |
muscle cell | 1.85e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 3.57e-13 | 73 |
somite | 7.66e-13 | 71 |
presomitic mesoderm | 7.66e-13 | 71 |
presumptive segmental plate | 7.66e-13 | 71 |
dermomyotome | 7.66e-13 | 71 |
trunk paraxial mesoderm | 7.66e-13 | 71 |
paraxial mesoderm | 1.60e-12 | 72 |
presumptive paraxial mesoderm | 1.60e-12 | 72 |
surface structure | 2.02e-12 | 99 |
integument | 1.04e-11 | 46 |
integumental system | 1.04e-11 | 46 |
multilaminar epithelium | 3.61e-11 | 83 |
epithelial vesicle | 8.54e-11 | 78 |
skin of body | 1.49e-09 | 41 |
skeletal muscle tissue | 4.41e-09 | 62 |
striated muscle tissue | 4.41e-09 | 62 |
myotome | 4.41e-09 | 62 |
trunk mesenchyme | 1.25e-08 | 122 |
muscle tissue | 1.46e-08 | 64 |
musculature | 1.46e-08 | 64 |
musculature of body | 1.46e-08 | 64 |
right ovary | 2.32e-07 | 5 |
mesenchyme | 3.96e-07 | 160 |
entire embryonic mesenchyme | 3.96e-07 | 160 |
unilaminar epithelium | 4.39e-07 | 148 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.84e-10 | 14 |