FFCP PHASE1:Hg19::chr2:149895029..149895054,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=130576 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=27018 | |||
|TSSclassifier=strong | |||
|UniProt=Q8NI32 | |||
|association_with_transcript=48bp_to_ENST00000409642,NM_177964,uc002twv.1,uc002tww.1_5end | |||
|coexpression_cluster_id=C2660 | |||
|description=CAGE_peak_3_at_LYPD6B_5end | |||
|id=chr2:149895029..149895054,+ | |||
|ontology_enrichment_celltype=CL:0002620!5.75e-10!23 | |||
|ontology_enrichment_celltype_v019=CL:0002586;4.73e-10;3!CL:0000346;2.52e-09;3!CL:1000428;2.52e-09;3!CL:0000197;3.84e-09;6!CL:0000098;3.84e-09;6!CL:0002167;3.84e-09;6!CL:0000064;4.06e-09;3!CL:0000067;4.06e-09;3!CL:0005012;4.06e-09;3!CL:0002304;4.06e-09;3!CL:0000710;1.69e-08;20!CL:0000149;1.27e-07;4!CL:0000075;1.65e-07;27 | |||
|ontology_enrichment_celltype_v019_2=CL:0002586,3.01e-10,3;CL:0000346,1.71e-09,3;CL:1000428,1.71e-09,3;CL:0000064,3.74e-09,3;CL:0000067,3.74e-09,3;CL:0005012,3.74e-09,3;CL:0002304,3.74e-09,3;CL:0000197,3.86e-09,6;CL:0000098,3.86e-09,6;CL:0002167,3.86e-09,6;CL:0000710,1.53e-08,20;CL:0000149,9.08e-08,4;CL:0000075,1.57e-07,27 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3451;5.64e-07;2!DOID:4159;5.64e-07;2!DOID:0060122;5.64e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3451,6.19e-07,2;DOID:4159,6.19e-07,2;DOID:0060122,6.19e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0002097!3.05e-11!40;UBERON:0002199!9.06e-10!45;UBERON:0002416!9.06e-10!45;UBERON:0000475!5.21e-09!365;UBERON:0003056!6.50e-08!61;UBERON:0007625!1.03e-07!11;UBERON:0004121!4.03e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0007625;5.81e-16;11!UBERON:0000488;1.70e-11;4!UBERON:0001781;4.73e-10;3!UBERON:0001782;4.73e-10;3!UBERON:0000412;2.52e-09;3!UBERON:0001992;2.52e-09;3!UBERON:0001778;4.06e-09;3!UBERON:0001775;4.06e-09;3!UBERON:0010371;1.20e-08;31!UBERON:0000019;1.20e-08;19!UBERON:0000047;1.20e-08;19!UBERON:0004088;1.20e-08;19!UBERON:0010230;1.20e-08;19!UBERON:0000970;3.81e-08;20!UBERON:0002104;1.08e-07;21!UBERON:0001456;1.08e-07;21!UBERON:0002203;1.11e-07;6!UBERON:0001768;1.11e-07;6!UBERON:0002200;1.11e-07;6!UBERON:0000020;6.61e-07;23 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007625,3.39e-16,11;UBERON:0000488,1.13e-11,4;UBERON:0001782,3.01e-10,3;UBERON:0005424,3.01e-10,3;UBERON:0000412,1.71e-09,3;UBERON:0001992,1.71e-09,3;UBERON:0005085,2.81e-09,31;UBERON:0001778,3.74e-09,3;UBERON:0001775,3.74e-09,3;UBERON:0000019,2.90e-08,20;UBERON:0000047,2.90e-08,20;UBERON:0010312,2.90e-08,20;UBERON:0004088,2.90e-08,20;UBERON:0010230,2.90e-08,20;UBERON:0003072,2.90e-08,20;UBERON:0004128,2.90e-08,20;UBERON:0003071,2.90e-08,20;UBERON:0002097,4.79e-08,41;UBERON:0000970,8.35e-08,21;UBERON:0002104,8.35e-08,21;UBERON:0002203,8.57e-08,6;UBERON:0001768,8.57e-08,6;UBERON:0002200,8.57e-08,6;UBERON:0001781,9.08e-08,4;UBERON:0001456,2.18e-07,22;UBERON:0002199,6.82e-07,46;UBERON:0002416,6.82e-07,46 | |||
|phase1_expression=0,0,0,3.00219895059391,0,0,0,0,0,0.245733936501509,0,0.436882744260345,0,0,0,0,0,0,0,0,0.204000691244253,0,0,0,0,0.0764134057479513,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15877215168659,0,0,1.13441780596881,1.99556457716308,2.45937399940753,0.327447688744282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12135520028461,0,0,0,0.134710672069688,0,0,0,0.234321431833797,0,0,0,0.352303495931295,0.485618833104395,0.280901613404497,0,0.122834317311768,0,0,1.23633464639278,0,0,0,0,0,2.19488810440419,2.45190236639216,0.45071417671979,0,3.40840307808838,5.76604949810132,0.635795703478686,0,0.103052529238439,2.06112432036503,4.46680455195816,0.168776332241266,0.584622030967192,0.757301322732344,1.93304787148829,0.80823028409406,3.55009592516614,5.23910910783729,0.169560592310488,0,0,0,0.487894824518382,0.132529768321485,0.348581828608555,0,0.504641701751257,0,1.56449532329816,1.92972281457866,4.14404764057442,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,2.80483547606892,0,0,0,0,0,0,0.245976877086227,1.88724591328378,0,0,0,0,0,0,0,0.811512834825538,2.34817388471643,0,0,0,0.790204397959275,0.858486162094873,0,0,0,0,0,0.283550194484773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0.142977993658148,0.542621605391443,1.64648067356154,0,0,1.58390374586686,0,0,0,0,0,0,0,0,0,3.04040744001916,0.410952645100767,1.79060963239896,0,0,0,0,0,1.30139853857622,0,0,0,0,0,0.414415513436035,0,0,0,5.40724239980099,9.99202337264106,24.4438743302599,10.7770101793296,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0,0,1.81434175997808,0,0.306923946576125,0,0,2.04682899626681,0,0,0,0.177561725313127,0,0,0,0.362578348774867,0,0.184161977871793,0.229628896329213,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0.270946437543853,0,0,0,0,0,0,2.82095137628028,7.21632220539353,2.92840555197873,0.103041011647722,1.28197250745681,0.907604499126468,0,0,1.6068392984416,0,0,0,0,0.107420244868274,0,0.0852266274161009,0,0.330569830721956,0.192190067365106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235624804691373,0,0,0,0,0,0,0,0.141405431953713,0,0,0,0.438450885253763,0,0,0,0,0,0.143411352204052,1.47373561519682,0,0,0,0,0,0.349934720244983,0.0962221127255121,0,0,0.0941438007767792,0,0,0.443430153536676,0,1.01489521846434,0,0.569647187174163,0,0,0,0,0,1.81600920916704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.851692475380653,0,0,0,0.166849141711909,0,0,0,0,0,0,0,0,0,0,0,0.47748896947538,0.296964680832639,0.307160702099232,0.994147647766298,0,0.111308705022906,0,0.211125408127993,0,0,0,0,0,5.59871257791253,0,0,0,0,0,0,0.969332746095218,0.0927680981618513,3.99227596002388,1.04171104434093,0.262379999988587,0.724999575434793,0,0,0.472775363535873,0.344743373241465,0,0,0,0,0,0,0.295547618953547,0,0,0,0,2.16489906109302,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0,0,0,0,0.067401132980677,0,0,0.547364367646998,0,0,0.789168805698781,0,0,0,0.901940516486955,0.622129148383483,0,0,0,0,0,0,1.21491816834592,0.195984794828755,0.0870592065804026,0,0,0,0,0,0,0,0.677942222341597,0.822251547880505,0,0.633107959558787,0.195551382734803,0,0.426905989478705,0,0.144090417154106,0,0,0,3.60332353139754,0,0,0,6.73188236399724,0.288950589901519,0,0,0,3.43812353135966,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,1.37798474120648,0,1.59045937961861,0.408610218334727,0.321506296930038,0,0,0,0.77380195455795,0.364497339948148,1.34173875039706,0.236417121897595,0.419636705079985,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0.681552087141687,2.71949019648302,0,0,0,0,0.171086837884329,0.704815022316672,0,2.67247318669432,1.24271716604159,0,0,0,0,0,0,0,0,0,0.886068179966986,0.122026264901963,0,0,0.110929051536852,0.124192805882767,0,1.24980407962107,0,0,1.6468607378872,0.468334905806882,0.144921028610825,0,0,0,0.189403005275089,0.251567901752575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.181848659202559,0,0,0.398095888698616,9.20063858725253,0,0,21.4514326988707,0,0,2.60994291965212,6.80117776536817,0.926089897295336,0.244736704506468,0.179088841081487,2.77921302444875,0,0.353378291891762,0,0,0,1.72715170865599,1.21543982470953,0.138258436151731,0,0,0,0,0.245772908753719,0,0,0,0,0.567515953566836,0,0,0,0,0,0,0.109209638192014,0,0,0,0,0.636008701306837,0,0,0,2.4499638188256,0.256916900385838,0,0,0.205116364240755,0.756215088665154,0.207471757392654,0,0,0.0981477185010256,0.707818340086442,0,0,1.90691047733584,2.0710797781803,0.596748666348824,0.0752103283492573,0.20170506870352,0,0,0,0,0.270150338473579,0,0,0.317079050969534,1.64092442705466,0,0,0,0.255524855279191,0.535701835878287,0.336283722218824,0,0,0.0887023701626388,0,0,0.0679697329768317,0.328863867814245,0,0,0.235479278551542,0.157115589916002,0.560544326627578,0,0,0,0.0714765441766563,0,0.116241425368125,0,0,0,0,0.691259661814092,0,0,0,0,0.22910686854405,0,0,0,0.196300467230486,0.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| |||
|short_description=p3@LYPD6B | |||
}} |
Revision as of 05:54, 21 January 2014
Short description: | p3@LYPD6B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LYPD6B_5end |
Coexpression cluster: | C2660_Olfactory_mesodermal_mesenchymal_Retinal_glioblastoma_Fibroblast_basal |
Association with transcript: | 48bp_to_ENST00000409642, NM_177964, uc002twv.1, uc002tww.1_5end |
EntrezGene: | LYPD6B |
HGNC: | 27018 |
UniProt: | Q8NI32 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
retinal pigment epithelial cell | 3.01e-10 | 3 |
hair follicle dermal papilla cell | 1.71e-09 | 3 |
stem cell of epidermis | 1.71e-09 | 3 |
ciliated cell | 3.74e-09 | 3 |
ciliated epithelial cell | 3.74e-09 | 3 |
multi-ciliated epithelial cell | 3.74e-09 | 3 |
non-pigmented ciliary epithelial cell | 3.74e-09 | 3 |
receptor cell | 3.86e-09 | 6 |
sensory epithelial cell | 3.86e-09 | 6 |
olfactory epithelial cell | 3.86e-09 | 6 |
neurecto-epithelial cell | 1.53e-08 | 20 |
visual pigment cell | 9.08e-08 | 4 |
columnar/cuboidal epithelial cell | 1.57e-07 | 27 |
Ontology term | p-value | n |
---|---|---|
pigment epithelium of eye | 3.39e-16 | 11 |
atypical epithelium | 1.13e-11 | 4 |
pigmented layer of retina | 3.01e-10 | 3 |
presumptive retinal pigmented epithelium | 3.01e-10 | 3 |
dermal papilla | 1.71e-09 | 3 |
papillary layer of dermis | 1.71e-09 | 3 |
ectodermal placode | 2.81e-09 | 31 |
ciliary epithelium | 3.74e-09 | 3 |
ciliary body | 3.74e-09 | 3 |
camera-type eye | 2.90e-08 | 20 |
simple eye | 2.90e-08 | 20 |
immature eye | 2.90e-08 | 20 |
ocular region | 2.90e-08 | 20 |
eyeball of camera-type eye | 2.90e-08 | 20 |
optic cup | 2.90e-08 | 20 |
optic vesicle | 2.90e-08 | 20 |
eye primordium | 2.90e-08 | 20 |
skin of body | 4.79e-08 | 41 |
eye | 8.35e-08 | 21 |
visual system | 8.35e-08 | 21 |
vasculature of eye | 8.57e-08 | 6 |
uvea | 8.57e-08 | 6 |
vasculature of head | 8.57e-08 | 6 |
layer of retina | 9.08e-08 | 4 |
face | 2.18e-07 | 22 |
integument | 6.82e-07 | 46 |
integumental system | 6.82e-07 | 46 |
Ontology term | p-value | n |
---|---|---|
skin carcinoma | 6.19e-07 | 2 |
skin cancer | 6.19e-07 | 2 |
integumentary system cancer | 6.19e-07 | 2 |