FFCP PHASE1:Hg19::chr20:10400400..10400411,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C619 | |||
|description=CAGE_peak_at_chr20:10400400..10400411,- | |||
|id=chr20:10400400..10400411,- | |||
|ontology_enrichment_celltype=CL:0000066!2.39e-30!254;CL:0000223!7.18e-15!59;CL:0002076!1.38e-13!43;CL:0000076!1.04e-12!62;CL:0002159!8.54e-10!13;CL:0000244!1.39e-09!4;CL:0000731!1.39e-09!4;CL:0002166!1.33e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000307;8.23e-09;3!CL:0000167;1.10e-07;1!CL:0000164;1.10e-07;1!CL:0000502;1.10e-07;1!CL:0000172;1.10e-07;1!CL:0000173;1.10e-07;1!CL:0002251;1.57e-07;20!CL:0002336;3.20e-07;1!CL:0002261;3.20e-07;1!CL:0002170;3.20e-07;1!CL:0000244;4.91e-07;4!CL:0000731;4.91e-07;4!CL:0002076;7.72e-07;42!CL:0000083;8.18e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.27e-13,253;CL:0000076,9.61e-10,63;CL:0000068,9.28e-09,3;CL:0000069,9.28e-09,3;CL:0000307,9.28e-09,3;CL:0000377,9.28e-09,3;CL:0000223,1.17e-08,58;CL:0002076,4.08e-08,42;CL:0000167,1.25e-07,1;CL:0000164,1.25e-07,1;CL:0000502,1.25e-07,1;CL:0000172,1.25e-07,1;CL:0000173,1.25e-07,1;CL:0002351,1.25e-07,1;CL:0002251,1.74e-07,20;CL:0002336,4.61e-07,1;CL:0002261,4.61e-07,1;CL:0002170,4.61e-07,1;CL:0000244,5.38e-07,4;CL:0000731,5.38e-07,4;CL:0000083,8.69e-07,4 | |||
|ontology_enrichment_development_v019=CL:0000377;8.23e-09;3!CL:0002351;1.10e-07;1 | |||
|ontology_enrichment_disease=DOID:305!1.20e-24!106;DOID:0050687!6.27e-23!143;DOID:1749!1.40e-21!14;DOID:162!6.73e-13!235;DOID:14566!2.41e-12!239;DOID:299!7.19e-08!25 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.83e-34;14!DOID:4074;8.98e-13;2!DOID:4905;8.98e-13;2!DOID:3498;8.98e-13;2!DOID:4430;1.10e-07;1!DOID:1793;8.18e-07;4!DOID:1324;8.40e-07;15 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,1.37e-34,14;DOID:305,2.60e-13,106;DOID:4074,1.01e-12,2;DOID:4905,1.01e-12,2;DOID:3498,1.01e-12,2;DOID:0050687,2.92e-10,143;DOID:4430,1.25e-07,1;DOID:1324,8.34e-07,15;DOID:1793,8.69e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0004119!7.35e-14!169;UBERON:0000925!7.35e-14!169;UBERON:0006595!7.35e-14!169;UBERON:0003729!1.47e-11!5;UBERON:0000365!2.09e-11!5;UBERON:0001264!1.49e-10!10;UBERON:0003922!1.49e-10!10;UBERON:0003923!1.49e-10!10;UBERON:0003924!1.49e-10!10;UBERON:0003921!1.49e-10!10;UBERON:0002114!6.10e-10!12;UBERON:0001007!7.59e-10!155;UBERON:0001555!7.59e-10!155;UBERON:0007026!7.59e-10!155;UBERON:0003343!1.42e-09!4;UBERON:0004785!1.42e-09!4;UBERON:0001045!1.77e-09!11;UBERON:0005910!2.01e-09!6;UBERON:0002394!8.25e-09!4;UBERON:0003928!8.25e-09!4;UBERON:0004921!1.80e-08!129;UBERON:0004185!1.80e-08!129;UBERON:0000344!2.01e-08!12;UBERON:0002108!2.09e-08!14;UBERON:0001041!3.81e-08!98;UBERON:0000077!4.36e-07!130;UBERON:0005911!4.74e-07!82;UBERON:0002075!7.40e-07!18 | |||
|ontology_enrichment_uberon_v019=UBERON:0001264;6.18e-15;10!UBERON:0003343;1.78e-14;4!UBERON:0004785;1.78e-14;4!UBERON:0000974;8.08e-10;6!UBERON:0002075;3.31e-08;18!UBERON:0003729;1.12e-07;13!UBERON:0000997;3.20e-07;1!UBERON:0005056;3.20e-07;1!UBERON:0004176;3.20e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001264,6.28e-15,10;UBERON:0003343,1.91e-14,4;UBERON:0004785,1.91e-14,4;UBERON:0002075,3.34e-08,18;UBERON:0003729,1.28e-07,13;UBERON:0000997,2.66e-07,1;UBERON:0005056,2.66e-07,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0.728590576585084,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329250856225877,1.1240175325762,0.402115889646523,1.11106134190236,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,1.87467667973554,0.839910640994298,0.708875486211932,2.86587272649115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.40101294060657,0.828728900423067,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0.831076008928724,0,0,0,0,0,0.650756789328606,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,3.63626813794152,0.384380134730212,0,0.30347334256665,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.274537029736055,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.73199802905922,0,1.08890984861323,0,1.29151611801369,3.36942951335251,0.443430153536676,0.689170200620878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,0,0,0.111308705022906,0,0,0,0,0,0,0,0,0.539210106883961,5.37063524026827,0,0,0,0,0,0,0,0,0,0,0.227586896570999,0,0,0,0,0,0,0,0,0,0,0,1.41620002574687,0.139423744278603,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.421996129056054,0.326465616318295,0,0,0,0,0,0,0,0,0,0,0,0,1.17398771359254,1.45668227720456,0,0,0,0,1.9542044523884,0,1.32930774541437,0.661983911750998,3.7671950208867,2.38944859545918,0.569219092059585,0.138674673013139,0,1.56787835863004,0.0870592065804026,0,0,0,0.0730893170861856,0.0821154570532092,0,0,0,0.274083849293502,0,0,0,0,0,0,0.288180834308212,0,0,3.16920555573929,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.688992370603241,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0.105600336519406,0,3.45447355175002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.39521573038061,0,0,0,0,0,0,0,1.91502377331055,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0.385239660814607,0,0.782982875895635,0,0,0.244736704506468,0,0,0,0,0.192914038270915,0.168942440653073,0,0,0,0,0,0,0,0.327609848846413,0,0.845248493434508,0,0,0,0,0,1.258915569475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.06110208852154,2.00548529691159,2.93485757634686,0.115525666150338,0,0,0,0,0,0,0,0.163771917510097,0.147856086217045,0,0,0,0,0,0,0,0.175871244359621,0.383287282918786,0,0,0,0,0,0,0,0,0,0.354581522651905,0,0,0,0,0,0,0,0,0,0.348724276104376,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,5.79086378329934,0.365753774946808,0,0,0,0,0,0,0,0,0,1.35866559210006,0,0,3.76253837089218,0,3.29947165942276,0,0,0,0,0,0,0,4.99951028095841,4.58763333230399,21.2639621726296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217716747896961,0,0,0.0717222053926763,0,0.488419611665847,0,0,0.269475606319761,0,0,0,0,0,0 | |||
|short_description=p@chr20:10400400..10400411,- | |||
}} |
Revision as of 10:17, 21 January 2014
Short description: | p@chr20:10400400..10400411, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:10400400..10400411, - |
Coexpression cluster: | C619_squamous_bile_Small_Mammary_mucinous_Tracheal_giant |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.27e-13 | 253 |
squamous epithelial cell | 9.61e-10 | 63 |
duct epithelial cell | 9.28e-09 | 3 |
branched duct epithelial cell | 9.28e-09 | 3 |
tracheal epithelial cell | 9.28e-09 | 3 |
tracheoblast | 9.28e-09 | 3 |
endodermal cell | 1.17e-08 | 58 |
endo-epithelial cell | 4.08e-08 | 42 |
peptide hormone secreting cell | 1.25e-07 | 1 |
enteroendocrine cell | 1.25e-07 | 1 |
type D enteroendocrine cell | 1.25e-07 | 1 |
somatostatin secreting cell | 1.25e-07 | 1 |
pancreatic D cell | 1.25e-07 | 1 |
progenitor cell of endocrine pancreas | 1.25e-07 | 1 |
epithelial cell of alimentary canal | 1.74e-07 | 20 |
buccal mucosa cell | 4.61e-07 | 1 |
endothelial cell of viscerocranial mucosa | 4.61e-07 | 1 |
keratinized cell of the oral mucosa | 4.61e-07 | 1 |
transitional epithelial cell | 5.38e-07 | 4 |
urothelial cell | 5.38e-07 | 4 |
epithelial cell of pancreas | 8.69e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
pancreas | 6.28e-15 | 10 |
mucosa of oral region | 1.91e-14 | 4 |
respiratory system mucosa | 1.91e-14 | 4 |
viscus | 3.34e-08 | 18 |
mouth mucosa | 1.28e-07 | 13 |
mammalian vulva | 2.66e-07 | 1 |
external female genitalia | 2.66e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.37e-34 | 14 |
carcinoma | 2.60e-13 | 106 |
pancreas adenocarcinoma | 1.01e-12 | 2 |
pancreatic carcinoma | 1.01e-12 | 2 |
pancreatic ductal adenocarcinoma | 1.01e-12 | 2 |
cell type cancer | 2.92e-10 | 143 |
somatostatinoma | 1.25e-07 | 1 |
lung cancer | 8.34e-07 | 15 |
pancreatic cancer | 8.69e-07 | 4 |