FFCP PHASE1:Hg19::chr3:30449903..30449909,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport= | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr3:30449903..30449909,+ | |||
|id=chr3:30449903..30449909,+ | |||
|ontology_enrichment_celltype=CL:0002540!2.19e-18!6;CL:0002564!7.39e-14!3;CL:0000064!2.83e-12!3;CL:0005012!2.83e-12!3;CL:0000067!2.83e-12!3;CL:0002304!2.83e-12!3;CL:0000188!2.25e-11!9;CL:0002092!6.68e-11!10;CL:0002623!9.37e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000515;2.38e-44;3!CL:0000056;1.38e-33;4!CL:0000680;1.04e-19;7!CL:0002623;2.19e-12;3!CL:0002564;2.89e-12;3!CL:0002321;9.24e-10;15!CL:0000622;5.92e-08;5!CL:0000138;7.17e-07;6!CL:0000154;7.80e-07;6!CL:0002540;7.80e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000515,1.17e-33,4;CL:0002623,2.31e-12,3;CL:0002564,3.24e-12,3;CL:0000622,6.13e-08,5;CL:0000058,7.17e-07,6;CL:0000138,7.17e-07,6;CL:0002540,7.58e-07,6;CL:0000154,8.02e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000515;1.38e-33;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3371;1.84e-34;1!DOID:4549;1.84e-34;1!DOID:5861;1.84e-34;1!DOID:6496;1.84e-34;1!DOID:201;7.17e-07;6!DOID:0060100;7.17e-07;6 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,1.84e-34,1;DOID:4549,1.84e-34,1;DOID:5861,1.84e-34,1;DOID:6496,1.84e-34,1;DOID:201,7.17e-07,6;DOID:0060100,7.17e-07,6 | |||
|ontology_enrichment_uberon=UBERON:0002242!7.39e-14!3;UBERON:0003068!7.39e-14!3;UBERON:0002328!7.39e-14!3;UBERON:0004880!7.39e-14!3;UBERON:0002200!8.71e-13!11;UBERON:0006876!8.71e-13!11;UBERON:0001778!2.83e-12!3;UBERON:0001775!2.83e-12!3;UBERON:0000488!2.49e-09!4;UBERON:0005284!3.19e-08!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0002418;1.85e-12;3!UBERON:0004755;1.85e-12;3!UBERON:0002242;2.89e-12;3!UBERON:0004765;3.19e-12;26!UBERON:0001134;3.27e-09;16!UBERON:0002036;3.27e-09;16!UBERON:0001474;2.13e-08;18!UBERON:0001434;4.02e-08;36!UBERON:0011135;7.01e-08;5!UBERON:0002216;7.01e-08;5!UBERON:0011134;7.01e-08;5!UBERON:0002209;7.01e-08;5!UBERON:0002213;7.01e-08;5!UBERON:0007844;7.01e-08;5!UBERON:0011138;7.01e-08;5!UBERON:0001130;7.01e-08;5!UBERON:0001066;7.01e-08;5!UBERON:0001468;7.01e-08;5!UBERON:0001044;7.80e-07;6!UBERON:0003293;7.80e-07;6!UBERON:0003294;7.80e-07;6!UBERON:0010047;7.80e-07;6!UBERON:0003408;7.80e-07;6!UBERON:0000167;7.80e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002418,1.85e-12,3;UBERON:0004755,1.85e-12,3;UBERON:0002242,3.24e-12,3;UBERON:0003068,3.24e-12,3;UBERON:0002328,3.24e-12,3;UBERON:0004880,3.24e-12,3;UBERON:0011135,7.49e-08,5;UBERON:0002216,7.49e-08,5;UBERON:0011134,7.49e-08,5;UBERON:0002209,7.49e-08,5;UBERON:0002213,7.49e-08,5;UBERON:0005856,7.49e-08,5;UBERON:0005866,7.49e-08,5;UBERON:0005863,7.49e-08,5;UBERON:0007844,7.49e-08,5;UBERON:0011138,7.49e-08,5;UBERON:0001130,7.49e-08,5;UBERON:0001066,7.49e-08,5;UBERON:0001468,7.49e-08,5;UBERON:0001044,8.02e-07,6;UBERON:0003293,8.02e-07,6;UBERON:0003294,8.02e-07,6;UBERON:0010047,8.02e-07,6;UBERON:0000167,8.02e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.247532705920093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0.221729397462564,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.397227542439656,0,0,0,0,0,0,0.404132016209064,0.163461903113459,0.302714855289863,0,0,0,0,0,0,0,0,0.408308342509787,0,0,0,0,0,0,0,0.375355559615893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.36669142910475,0,0,0,0,0,0.514414748524284,0,0.532844358032199,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0.239624855491583,0,0,0,1.64381058040307,1.07436577943937,0,0,0,0,0,0,0,0,0,0,0,0,0.36807447515742,1.00034104211935,0.813795071099207,0.415941723061614,0,0,0.117141414992713,0.300946099727719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0,0.0821271560138091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.096670718292122,0.770243085573222,0.767518373630648,0,0,0.145016693914229,0.255679882248303,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372158369359667,0.632758849437452,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.578775534266688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0,0,0,0,0.227884111694002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.61850119435151,0,0,0,0,0,0,0,0.19980960958213,0,0,0,0,0,0,0,0.104602846312333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.298509605773748,0,0,0.757612021100357,2.26411111577318,0.889811221596536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109209638192014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.690359926060101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.07216164163037,0.3414369541879,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr3:30449903..30449909,+ | |||
}} | |||
Revision as of 18:00, 21 January 2014
| Short description: | p@chr3:30449903..30449909, + |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | No |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_at_chr3:30449903..30449909, + |
| Coexpression cluster: | NA |
| Association with transcript: | NA |
| EntrezGene: | NA |
| HGNC: | NA |
| UniProt: | NA |
| Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| skeletal muscle myoblast | 1.17e-33 | 4 |
| acinar cell of salivary gland | 2.31e-12 | 3 |
| nucleus pulposus cell of intervertebral disc | 3.24e-12 | 3 |
| acinar cell | 6.13e-08 | 5 |
| chondroblast | 7.17e-07 | 6 |
| chondrocyte | 7.17e-07 | 6 |
| mesenchymal stem cell of the bone marrow | 7.58e-07 | 6 |
| protein secreting cell | 8.02e-07 | 6 |
| Ontology term | p-value | n |
|---|---|---|
| cartilage tissue | 1.85e-12 | 3 |
| skeletal tissue | 1.85e-12 | 3 |
| nucleus pulposus | 3.24e-12 | 3 |
| axial mesoderm | 3.24e-12 | 3 |
| notochord | 3.24e-12 | 3 |
| chordamesoderm | 3.24e-12 | 3 |
| intervertebral cartilage | 7.49e-08 | 5 |
| symphysis | 7.49e-08 | 5 |
| nonsynovial joint | 7.49e-08 | 5 |
| fibrous joint | 7.49e-08 | 5 |
| cartilaginous joint | 7.49e-08 | 5 |
| developing mesenchymal condensation | 7.49e-08 | 5 |
| pre-cartilage condensation | 7.49e-08 | 5 |
| cartilaginous condensation | 7.49e-08 | 5 |
| cartilage element | 7.49e-08 | 5 |
| post-cranial axial skeletal system | 7.49e-08 | 5 |
| vertebral column | 7.49e-08 | 5 |
| intervertebral disk | 7.49e-08 | 5 |
| intervertebral joint | 7.49e-08 | 5 |
| saliva-secreting gland | 8.02e-07 | 6 |
| gland of oral region | 8.02e-07 | 6 |
| gland of foregut | 8.02e-07 | 6 |
| oral gland | 8.02e-07 | 6 |
| oral cavity | 8.02e-07 | 6 |
| Ontology term | p-value | n |
|---|---|---|
| chondrosarcoma | 1.84e-34 | 1 |
| extraosseous chondrosarcoma | 1.84e-34 | 1 |
| myxoid chondrosarcoma | 1.84e-34 | 1 |
| extraskeletal myxoid chondrosarcoma | 1.84e-34 | 1 |
| connective tissue cancer | 7.17e-07 | 6 |
| musculoskeletal system cancer | 7.17e-07 | 6 |
