FFCP PHASE1:Hg19::chr3:142607946..142607965,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=26577 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8739 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-12bp_to_uc003evd.2_5end | |||
|coexpression_cluster_id=C29 | |||
|description=CAGE_peak_5_at_PCOLCE2_5end | |||
|id=chr3:142607946..142607965,- | |||
|ontology_enrichment_celltype=CL:0000055!2.46e-12!180;CL:0000136!3.83e-12!15;CL:0000057!3.85e-07!75;CL:0000153!9.91e-07!9;CL:0000447!9.91e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000136;2.25e-21;13!CL:0002334;7.84e-13;12!CL:0000153;2.79e-12;9!CL:0000447;2.79e-12;9!CL:0000138;1.01e-09;6!CL:0000135;9.09e-09;3!CL:0000388;9.09e-09;3!CL:0002615;1.33e-07;3!CL:0002579;5.80e-07;3!CL:0000327;6.75e-07;15!CL:0000499;8.34e-07;28!CL:0002580;9.31e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,2.60e-25,15;CL:0002334,1.01e-12,12;CL:0000153,3.19e-12,9;CL:0000447,3.19e-12,9;CL:0000058,1.24e-09,6;CL:0000138,1.24e-09,6;CL:0000135,9.01e-09,3;CL:0000388,9.01e-09,3;CL:0002615,1.94e-07,3;CL:0002579,6.55e-07,3;CL:0000327,7.28e-07,15;CL:0000499,8.78e-07,28;CL:0002580,9.43e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007100!1.09e-10!27;UBERON:0000948!1.53e-08!24;UBERON:0005498!1.53e-08!24;UBERON:0004140!1.53e-08!24;UBERON:0009881!1.53e-08!24;UBERON:0004141!1.53e-08!24;UBERON:0003084!1.53e-08!24;UBERON:0007005!1.53e-08!24;UBERON:0004139!1.53e-08!24;UBERON:0004291!1.53e-08!24;UBERON:0003135!3.66e-07!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;3.48e-15;9!UBERON:0000042;3.48e-15;9!UBERON:0003688;6.66e-13;6!UBERON:0002358;6.66e-13;6!UBERON:0003684;6.66e-13;6!UBERON:0001178;6.66e-13;6!UBERON:0001443;2.49e-09;11!UBERON:0007846;9.09e-09;3!UBERON:0000043;9.09e-09;3!UBERON:0007845;9.09e-09;3!UBERON:0004151;1.23e-08;3!UBERON:0003978;1.53e-08;3!UBERON:0000946;1.53e-08;3!UBERON:0005904;1.80e-08;4!UBERON:0000310;9.78e-08;10!UBERON:0007100;1.04e-07;25!UBERON:0006947;9.31e-07;3!UBERON:0004054;9.31e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,1.08e-12,6;UBERON:0002358,1.08e-12,6;UBERON:0003684,1.08e-12,6;UBERON:0001178,1.08e-12,6;UBERON:0004797,1.19e-11,7;UBERON:0004457,6.76e-11,12;UBERON:0000042,6.76e-11,12;UBERON:0001443,2.46e-09,11;UBERON:0007846,9.01e-09,3;UBERON:0000043,9.01e-09,3;UBERON:0007845,9.01e-09,3;UBERON:0007100,1.23e-08,27;UBERON:0004151,1.27e-08,3;UBERON:0005904,1.29e-08,4;UBERON:0003978,1.67e-08,3;UBERON:0009751,1.67e-08,3;UBERON:0000946,1.67e-08,3;UBERON:0002523,1.67e-08,3;UBERON:0005983,1.67e-08,3;UBERON:0002165,1.67e-08,3;UBERON:0002062,1.67e-08,3;UBERON:0007280,1.67e-08,3;UBERON:0007023,6.52e-08,114;UBERON:0000310,9.87e-08,10;UBERON:0006947,7.29e-07,3;UBERON:0004054,7.29e-07,3 | |||
|phase1_expression=4.36028110249336,7.27941781229343,6.3429481843187,1.0007329835313,3.12872766099101,0.872338524100369,0,2.52687949370732,6.26845507679612,0,0,0,0,0,0,0,0.602694528023977,0.730310090387373,0.975865597581014,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.12786256184353,1.0843174571537,1.50401373190767,3.0417768981773,7.95285947051099,31.6312665696713,0.0945348171640679,0,0.175669571386252,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.993943903390637,2.15271869829786,0.662045904066094,1.14734648299525,1.77334191099179,0,0,0.24666754841716,0.311211035399766,0,0.326923806226917,0,0.576175924479999,0,0,0,0.448346041655403,0,0,0,0,0,0,0,0.247266929278557,0,0,0,0.125118519871964,0,0.438977620880838,0.30648779579902,0.150238058906597,0.226864366320042,0,0.213557388818567,0.211931901159562,0.300091096084402,0.206105058476878,0,1.30281799432113,4.05063197379039,1.46155507741798,0.252433774244115,0.184099797284599,0,1.06502877754984,0.403008392910561,0,0,0,0,0.365921118388786,0,0,0.207322110030741,0.252320850875628,0.36497735907583,0,0,0,0,0,0.118306800039844,0,0.241011029883482,0.220587945464788,0,0.237270619111097,0.134831308160164,0,0,0,0,0.8231480226628,0,0,0,0.590789906681404,0,0,0,0.109750285408626,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0.148631162288728,0,0,0,0.0895585227028483,0,0,0,0,0,0.144119953416961,0,0.317489471460845,0.381988425558278,0,1.71072446022705,0.205654985406647,0,0.285826432630578,0,0,0.07333828582095,0,3.57656445851882,0.845302752556,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0.301439377059586,0,0,0,0,0,0.239624855491583,0,0,6.51515880004106,0.61642896765115,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0.24538298343828,0,0,0,0.178428988797162,0.157702415033935,0.117141414992713,0.300946099727719,0,0,0,0,0,0,0,0,0,0,0,0,0,1.24053903909388,1.68808170616869,1.40330047216537,1.79394808957981,2.04682899626681,1.12597744800525,0,0.308419387605311,3.01854933032316,2.05317890034523,0,1.39452454151951,0,0.200506470303285,0,0.114814448164607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0.515205058238611,0.732555718546747,0.990113999047056,0,0,1.6068392984416,0,0,0.15350367472613,0,0.107420244868274,0.290033387828457,0.0852266274161009,0.178064071293475,0,0,0,0,0,2.83331112147576,4.1822236209636,1.23213432070436,0.532306030317022,2.60979897622522,0,0.715624433709956,0,0,0,0,0,0.318203247925937,0,0,0,0,2.22400729730648,0,0.421258456238981,0,1.70599442741899,0,0,0,4.52032466480971,0.551365343546124,1.99031692572366,0,0,0,0,0,0.845086807596724,0,0,0,0.354761064070598,17.0997184591108,3.95153871551882,0,0,0,0,0,0.470719003883896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307240764308458,0,0,0,0,0,0,0,0,0,8.05794985995417,0,0,0.568272293612826,0,0,0,0,0,0,0.329607748453519,0,4.5827037297746,0.552567831062295,0,0,0,0.622079175323615,0.0898683511473268,0,0,4.34030984802508,0,2.22273980289274,0,0,0,0,0,7.97499532978273,0.341380344856499,0,0,0,0,0.347249989866585,0,0,0,0,0,0,0,0.278847488557207,2.30850775511391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.98104772431402,0.973033209536731,0,0,0,0,0,2.40773294189637,0,0,0.19566461893209,0,1.97292201424695,0,0,0.31593289814244,0.450970258243478,0.933193722575224,0,0,0,0,0,0,0,0.0979923974143777,0,1.57254001417827,1.0319161948297,0.387025325156341,0.219267951258557,0.492692742319255,3.006659511141,0,0.677942222341597,0,0,0.0633107959558787,0,0.881747022766871,0.640358984218058,0,0,0,0,0,0,0,0.543616824294456,0.313808538937,0,0.288950589901519,0,0.136905378891993,0,0,0,17.8740736814243,4.12488763221031,11.485968393229,1.99679000498991,3.43380838509257,8.9268582976749,0.940568614814168,0.360299883542404,0,0,0,0,0,0,0,0,0.321506296930038,0.550157746388935,0,0,0,0,0,0.157611414598396,0.157363764404994,0,0.179287339332845,0,9.29103924285377,7.28301167401975,0,6.51599522104455,0.864221491201268,0.653174720218818,0,0,0.681552087141687,0.113312091520126,0,0,0,0,0,0,0.747511887973863,0,0.828478110694391,0.496166021811951,0,0,0,47.3295488931442,51.8928080626989,29.4091753692923,20.0002304732981,0.157054096250234,0,0,0,0,0,0,0.553394539744923,0.249960815924213,0.303298235083296,1.7127920012698,0,0.468334905806882,0,0.597019211547496,0,0,0.189403005275089,1.25783950876288,4.44905610798268,1.83072054717539,0.756154618816195,0.932623203496683,0.591420599958536,0,0,0.155262956876259,0.414706207840855,0,0,0,0,0,0.181848659202559,0,0,0,0,3.09056134664514,4.37774335395695,0,0.192619830407303,0,0,0,0.231522474323834,0,0,0,0,0.530067437837643,0,0,0.256241518587947,0,0,0,0,0,0,0,0.983091635014877,0,0,0.213383459388282,0,0,0.184105950251841,0,0,0,0.539124056983409,0,0,0,0,0,0,2.22603045457393,0,0,0,0,0,0,0,0,0,0,0,0,0.196295437002051,0,0,0,0,2.0710797781803,1.3924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| |||
|short_description=p5@PCOLCE2 | |||
}} |
Revision as of 21:45, 21 January 2014
Short description: | p5@PCOLCE2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_PCOLCE2_5end |
Coexpression cluster: | C29_mature_adipose_Adipocyte_breast_Lymphatic_vein_heart |
Association with transcript: | -12bp_to_uc003evd.2_5end |
EntrezGene: | PCOLCE2 |
HGNC: | 8739 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 2.60e-25 | 15 |
preadipocyte | 1.01e-12 | 12 |
GAG secreting cell | 3.19e-12 | 9 |
carbohydrate secreting cell | 3.19e-12 | 9 |
chondroblast | 1.24e-09 | 6 |
chondrocyte | 1.24e-09 | 6 |
fibrocyte | 9.01e-09 | 3 |
tendon cell | 9.01e-09 | 3 |
adipocyte of omentum tissue | 1.94e-07 | 3 |
omentum preadipocyte | 6.55e-07 | 3 |
extracellular matrix secreting cell | 7.28e-07 | 15 |
stromal cell | 8.78e-07 | 28 |
preadipocyte of the breast | 9.43e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
omentum | 1.08e-12 | 6 |
peritoneum | 1.08e-12 | 6 |
abdominal cavity | 1.08e-12 | 6 |
visceral peritoneum | 1.08e-12 | 6 |
blood vessel layer | 1.19e-11 | 7 |
cavity lining | 6.76e-11 | 12 |
serous membrane | 6.76e-11 | 12 |
chest | 2.46e-09 | 11 |
dense regular connective tissue | 9.01e-09 | 3 |
tendon | 9.01e-09 | 3 |
regular connective tissue | 9.01e-09 | 3 |
primary circulatory organ | 1.23e-08 | 27 |
cardiac chamber | 1.27e-08 | 3 |
duct of male reproductive system | 1.29e-08 | 4 |
valve | 1.67e-08 | 3 |
cardiac mesenchyme | 1.67e-08 | 3 |
cardial valve | 1.67e-08 | 3 |
tunica intima | 1.67e-08 | 3 |
heart layer | 1.67e-08 | 3 |
endocardium | 1.67e-08 | 3 |
endocardial cushion | 1.67e-08 | 3 |
presumptive endocardium | 1.67e-08 | 3 |
adult organism | 6.52e-08 | 114 |
breast | 9.87e-08 | 10 |
male genital duct | 7.29e-07 | 3 |
internal male genitalia | 7.29e-07 | 3 |