FFCP PHASE1:Hg19::chr4:90758565..90758580,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6622 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11138 | |||
|TSSclassifier=weak | |||
|UniProt=P37840 | |||
|association_with_transcript=-186bp_to_ENST00000394991_5end | |||
|description=CAGE_peak_9_at_SNCA_5end | |||
|id=chr4:90758565..90758580,- | |||
|ontology_enrichment_celltype=CL:0002139!8.67e-14!24;CL:0000115!2.08e-11!35;CL:0005020!8.28e-09!6;CL:0002138!8.28e-09!6;CL:0005022!8.28e-09!6;CL:0002078!9.93e-09!44;CL:0000071!1.02e-07!18;CL:0002546!1.02e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0002139;4.74e-12;24!CL:0000115;1.14e-10;36!CL:0002138;3.42e-10;6!CL:0002618;3.68e-09;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,1.56e-12,36;CL:0002139,5.66e-12,24;CL:0005020,5.06e-10,6;CL:0002138,5.06e-10,6;CL:0005022,5.06e-10,6;CL:0002078,9.68e-10,45;CL:0002618,3.12e-09,3;CL:0000213,3.05e-07,58;CL:0000215,3.05e-07,58 | |||
|ontology_enrichment_development_v019=CL:0005022;3.42e-10;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.09e-28!115;UBERON:0001049!1.20e-20!57;UBERON:0005068!1.20e-20!57;UBERON:0006241!1.20e-20!57;UBERON:0007135!1.20e-20!57;UBERON:0002020!4.08e-19!34;UBERON:0003528!4.08e-19!34;UBERON:0001893!7.60e-19!34;UBERON:0002780!1.36e-18!41;UBERON:0001890!1.36e-18!41;UBERON:0006240!1.36e-18!41;UBERON:0002616!2.67e-18!59;UBERON:0003080!6.05e-18!42;UBERON:0002791!8.21e-18!33;UBERON:0001869!2.98e-17!32;UBERON:0005743!9.93e-17!86;UBERON:0000073!1.69e-16!94;UBERON:0001016!1.69e-16!94;UBERON:0000955!5.62e-16!69;UBERON:0006238!5.62e-16!69;UBERON:0001017!2.71e-15!82;UBERON:0003075!4.88e-15!86;UBERON:0007284!4.88e-15!86;UBERON:0002346!7.89e-14!90;UBERON:0002619!1.92e-12!22;UBERON:0003056!2.02e-12!61;UBERON:0002308!1.27e-11!9;UBERON:0000125!1.27e-11!9;UBERON:0000956!1.93e-10!25;UBERON:0000203!1.93e-10!25;UBERON:0001950!1.94e-10!20;UBERON:0009663!1.49e-09!7;UBERON:0002420!2.62e-09!9;UBERON:0007245!2.62e-09!9;UBERON:0010009!2.62e-09!9;UBERON:0010011!2.62e-09!9;UBERON:0000454!2.62e-09!9;UBERON:0000200!4.57e-09!6;UBERON:0000033!9.59e-09!123;UBERON:0000153!7.91e-08!129;UBERON:0007811!7.91e-08!129;UBERON:0002193!7.96e-08!112;UBERON:0001986!1.02e-07!18;UBERON:0004638!1.02e-07!18;UBERON:0004852!1.02e-07!18;UBERON:0004111!2.79e-07!241;UBERON:0000025!6.30e-07!194 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.76e-20;15!UBERON:0000179;1.76e-20;15!UBERON:0000463;1.76e-20;15!UBERON:0002193;8.95e-11;42!UBERON:0002390;8.57e-09;32!UBERON:0001473;9.34e-08;8!UBERON:0004536;9.34e-08;8!UBERON:0006558;9.34e-08;8!UBERON:0002022;1.74e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.08e-20,15;UBERON:0000179,2.08e-20,15;UBERON:0000463,2.08e-20,15;UBERON:0004535,1.21e-08,109;UBERON:0001009,2.43e-08,112;UBERON:0001473,1.25e-07,8;UBERON:0004536,1.25e-07,8;UBERON:0006558,1.25e-07,8;UBERON:0002022,1.30e-07,1;UBERON:0002193,2.28e-07,108;UBERON:0007023,7.32e-07,114 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0.587200878669695,0,0.200544447470142,0,0.447830948479849,0,0.257575567634187,0.581592955118259,0,0.242584061187816,0,0,0,0,0,0,0,0,2.70852973188684,0.188242339542605,0.545812300115692,0.224723484445085,0,0,0,0.659702600373432,0.199463657621632,0,0.290209238628584,0.56738522469114,0,0,0,0,0,0,0,0.211255286311942,0,0,0.336985893439485,0.600707571366025,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382273228125229,1.32171328579026,0,0.526768169550154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.571994910780128,0.74291500265913,0.596287222100115,0,0.347140501607594,2.82653970962005,0.419499436209906,0,0,0.775250277507987,0.35576626268671,1.00416183829401,0,0.760272105718513,0,1.10298924103761,0,0.892997282840798,1.12264686313085,1.57656072676651,0,0.949265659568129,0.366403487860815,0,0,0,0,0,0,0,0,0,0,0.24666754841716,0,0.134710672069688,0,0,0,0,0,0.570471821544449,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0.168336113954066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100528972411631,0,0,0,0,0,0,0.433099343283221,2.31492756288305,2.09279567458058,0,0,0.246217006087397,0.702012795417713,0.743155811443641,0,0,0,0,0,0,0,0,0,0,0,0.444485260045183,0.381988425558278,0,0,0.411309970813294,1.8020583470635,0.285826432630578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2162378064119,1.50677127429638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.262248829918848,0,0,0,0,0,1.13733384070897,1.02056223165909,0,0,0,0,0,0,0,0.438519753291869,0.522870902049801,0.256450125116389,0.328014645699706,0,0,0.0915694648183434,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192190067365106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0.823611089208164,0.353437207037059,0,0,0,0,0,0,0,0.848432591722276,0,0,0,0,0,0,0,0,0,0,0.0982490410131212,0,0,0.211107635297664,0,0,0,0,0,0,0,0,0,0,0.229723400206959,2.02979043692868,3.82318603571188,2.27858874869665,0.238231775457789,0,1.29694662238543,2.16012574895246,3.17250070517708,2.88424992044177,0,0,0,0,0,0,0,0,0.423347165447766,0.324621940274555,0.842391534340376,0,0,0,1.01575066680962,0,0,0,0,0,0,0,0,0.278406173895242,0,1.35227839237992,0.66614393599564,0,0,0.146508179271894,0,0,0,0,0,0,0,0.703347082052564,0.111308705022906,0,0,0,0,0,0,0,0,0,0,0,0,2.3948309234694,0,0,1.02044907978036,0,0,0,0,0.227586896570999,0,0,0,0,0,0.885741385813839,0.723578631752448,0,0.221158519862449,0.295547618953547,0.658156191461918,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.158936578980379,0,0,0.141353071433941,0,0,0.176915129006678,0,0,0,0,0.067401132980677,0,0.468528891450678,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0.316553979779393,0,0,0.213452994739353,0,0,3.6651710773093,0,0,0,0,0,0,0,0.288950589901519,0.600420288709789,0.273810757783986,0,0,0,0.279282401272254,0,0,0,0,0,0,0,0,0,0,0,0.0984274815147488,0,1.59045937961861,0.408610218334727,0.160753148465019,0,0,0.674921674654501,0,1.39723980313457,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164185041498678,0,0,0,0,0.904980694530854,0.26446520348538,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0.886068179966986,1.34228891392159,1.1267183763585,0,0.332787154610557,0.496771223531068,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256241518587947,0,0,0.967809053062115,0,0,0.327130788511688,0,0,0,0,0,0,0,0,0,0,0.127894371303652,0,0,0,0,0,0,0,0,0,0,0,0,0.899209151350433,0,0.478901577171454,0.41023272848151,0,0.484100767249525,0.807378228159255,0,0.0981477185010256,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0.675375846183947,0,1.03343398250592,0.570742291745161,0,0,0,0,0,0,0,0,0.227662191351298,0,0,0,1.56330385846713,0.591954962065642,0,0,0,0.942693539496011,0,0,0,0,0.0714765441766563,0,0,0.173858272302579,0,0,0,0,0,0.473328002922261,0.0852134047591577,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118920090777569,0,0.219881033490858,0,0,0,0,0,0,0,0.297046400327086,0,0,0.0939839179798536,0.128915775947154,0,0,0,0,0,0.458729283404541,0.573358332605805,0,0.815897882290976,0.436350690340377,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.517164979309476,0,0,0,0,0,0,0,0.217716747896961,0,0,0,0,0,0,0,0,0,0.611207220914332,0,0,0.201273793591026,0 | |||
|short_description=p9@SNCA | |||
}} |
Revision as of 02:16, 22 January 2014
Short description: | p9@SNCA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_SNCA_5end |
Coexpression cluster: | NA |
Association with transcript: | -186bp_to_ENST00000394991_5end |
EntrezGene: | SNCA |
HGNC: | 11138 |
UniProt: | P37840 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 1.56e-12 | 36 |
endothelial cell of vascular tree | 5.66e-12 | 24 |
lymphangioblast | 5.06e-10 | 6 |
endothelial cell of lymphatic vessel | 5.06e-10 | 6 |
vascular lymphangioblast | 5.06e-10 | 6 |
meso-epithelial cell | 9.68e-10 | 45 |
endothelial cell of umbilical vein | 3.12e-09 | 3 |
lining cell | 3.05e-07 | 58 |
barrier cell | 3.05e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
blood | 2.08e-20 | 15 |
haemolymphatic fluid | 2.08e-20 | 15 |
organism substance | 2.08e-20 | 15 |
cardiovascular system | 1.21e-08 | 109 |
circulatory system | 2.43e-08 | 112 |
lymphatic vessel | 1.25e-07 | 8 |
lymph vasculature | 1.25e-07 | 8 |
lymphatic part of lymphoid system | 1.25e-07 | 8 |
insula | 1.30e-07 | 1 |
hemolymphoid system | 2.28e-07 | 108 |
adult organism | 7.32e-07 | 114 |