FFCP PHASE1:Hg19::chr6:105404974..105404989,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=389421 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=32207 | |||
|TSSclassifier=strong | |||
|UniProt=Q6ZN17 | |||
|association_with_transcript=51bp_to_ENST00000345080,NM_001004317,uc003pqv.1_5end | |||
|coexpression_cluster_id=C1967 | |||
|description=CAGE_peak_2_at_LIN28B_5end | |||
|id=chr6:105404974..105404989,+ | |||
|ontology_enrichment_celltype=CL:0002322!3.38e-11!5;CL:0000133!2.70e-08!59;CL:0000333!2.63e-07!41;CL:0000039!4.03e-07!7;CL:0000586!4.03e-07!7;CL:0000221!7.18e-07!71;CL:0002319!8.40e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0002322;2.26e-16;5!CL:0002321;4.54e-16;15!CL:0000333;1.17e-10;5!CL:0000039;2.61e-07;7!CL:0000586;2.61e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,1.78e-16,5;CL:0000039,3.13e-07,7;CL:0000586,3.13e-07,7;CL:0000133,3.91e-07,59;CL:0000333,7.87e-07,41 | |||
|ontology_enrichment_development_v019=UBERON:0009117;1.19e-07;10!UBERON:0005564;1.19e-07;10 | |||
|ontology_enrichment_disease=DOID:14566!2.27e-20!239;DOID:162!2.62e-19!235;DOID:3095!5.52e-18!22;DOID:2994!5.52e-18!22;DOID:171!1.23e-12!10;DOID:2531!2.56e-12!51;DOID:0060083!2.56e-12!51;DOID:169!2.89e-12!6;DOID:1240!3.31e-11!39;DOID:0050687!1.39e-10!143;DOID:8692!5.72e-10!31;DOID:1036!1.47e-09!8;DOID:0050686!6.50e-08!137 | |||
|ontology_enrichment_disease_v019=DOID:3095;1.70e-18;22!DOID:2994;1.70e-18;22!DOID:171;2.11e-11;10!DOID:1036;9.68e-11;8!DOID:169;6.92e-09;6!DOID:8692;1.44e-08;31!DOID:1240;9.71e-08;39!DOID:74;1.34e-07;2!DOID:2531;2.02e-07;51!DOID:0060083;2.02e-07;51!DOID:154;3.62e-07;2!DOID:4236;3.62e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,1.71e-18,22;DOID:2994,1.71e-18,22;DOID:14566,9.30e-18,239;DOID:162,2.59e-17,235;DOID:171,1.71e-11,10;DOID:1036,9.59e-11,8;DOID:0050687,1.11e-10,143;DOID:1240,1.12e-09,39;DOID:2531,1.67e-09,51;DOID:0060083,1.67e-09,51;DOID:169,5.27e-09,6;DOID:8692,9.32e-09,31;DOID:74,1.56e-07,2;DOID:0050686,1.88e-07,137;DOID:154,3.51e-07,2;DOID:4236,3.51e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0000013!8.43e-11!5;UBERON:0002410!8.43e-11!5;UBERON:0000010!1.13e-10!8 | |||
|ontology_enrichment_uberon_v019=UBERON:0000013;1.17e-10;5!UBERON:0002410;1.17e-10;5!UBERON:0000010;1.03e-08;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000013,8.41e-11,5;UBERON:0002410,8.41e-11,5;UBERON:0000010,8.42e-09,8 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.0821005894499457,0.157421562627358,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.29329006549908,1.98794652482228,2.78865462886844,5.07939169575315,4.03713361401005,1.82488679537915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10689594688802,0,0,0,0.100528972411631,0,0,0,0,0.115930404975077,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0,3.98836183652353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.69133312117807,0,1.71528151186722,0,0,4.62421981764692,0,0.199579371432817,0,0,2.921597462471,0,0.684704037099577,0,2.50634477090067,0,0,1.00899853595524,0,0,0,0,0,0,4.45449878232388,0,1.89318974933188,4.66300755196948,0,0,0,0.121360521749513,0,0,0,0.296964680832639,0,0,0,0,0,14.3565277527036,0,0,0,0,4.4310529965985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.13692047889758,2.33283690706603,2.2571249341328,0,0.120596438625408,0,0,0,0,0,0,0,0,0.23056390438806,0,0,0,0,0,4.08773192782946,0,0.332423363800313,5.41429585481234,4.70550082362575,6.54504189205787,6.64138064534648,0,0,0,1.97894300007517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.56843490662608,11.3020128622999,0,0,0.627865836814451,0,1.13843818411917,0,0,0,0,0,0,0,0,0,0,0,0,0.274083849293502,0.19871461170299,0.0633107959558787,0,0.881747022766871,0,0,0,0,0,0,0,0,0,0,0,2.02265412931063,0,0,0,0,0,0,0,0,0,0,0,0,0,10.4846354574708,9.21763232994517,12.362378757175,10.4475492973987,0,9.14471986310472,0,0,3.3758161177654,1.78801267576404,2.07720169014593,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0.513260513652988,0,0,0,0,0,0.197611631897944,0,0,0,0,0,0,0,0,0,0,0,0,0,1.93688088910723,0.37494122388632,0.909894705249887,0,0,0.936669811613763,2.02889440055155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.63804924423206,0.737318726261158,0,0.19998739585493,1.38699248602383,0,0,0,0,0,2.81367616868034,1.83302179374359,0.629063767423586,5.89732046236875,6.78930119816101,3.18862380152524,0,3.91051442581271,0,0,1.60114149657094,0,0,0,0,0.159633859057151,0,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135075169236789,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26757386311357,0,0,0,0,0,0,0.157115589916002,0,0,0,0,0,0,3.48724276104376,8.17133879822123,0,0,0,0,0,0.946656005844523,1.53384128566484,0,0,0,0,0,0,0,0,0,0,0,0.233939463462106,0,0,0,0,1.35866559210006,0,0,0,0,0.235676547101626,0,0,0,0,0,0.0644578879735772,1.49911733887393,0,0,0,0,0,0,0,0,0,0,0,0,0,2.14482922219634,2.4038425832013,0,1.63182127587171,5.07713070004565,1.47031839255752,1.25353769646188,0,0,0,0,0,0,0,0.434523000071005,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p2@LIN28B | |||
}} |
Revision as of 13:09, 22 January 2014
Short description: | p2@LIN28B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LIN28B_5end |
Coexpression cluster: | C1967_anaplastic_embryonic_hepatoblastoma_chronic_hepatocellular_Wilms_hereditary |
Association with transcript: | 51bp_to_ENST00000345080, NM_001004317, uc003pqv.1_5end |
EntrezGene: | LIN28B |
HGNC: | 32207 |
UniProt: | Q6ZN17 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 1.78e-16 | 5 |
germ line cell | 3.13e-07 | 7 |
germ cell | 3.13e-07 | 7 |
neurectodermal cell | 3.91e-07 | 59 |
migratory neural crest cell | 7.87e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
sympathetic nervous system | 8.41e-11 | 5 |
autonomic nervous system | 8.41e-11 | 5 |
peripheral nervous system | 8.42e-09 | 8 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 1.71e-18 | 22 |
germ cell cancer | 1.71e-18 | 22 |
disease of cellular proliferation | 9.30e-18 | 239 |
cancer | 2.59e-17 | 235 |
neuroectodermal tumor | 1.71e-11 | 10 |
chronic leukemia | 9.59e-11 | 8 |
cell type cancer | 1.11e-10 | 143 |
leukemia | 1.12e-09 | 39 |
hematologic cancer | 1.67e-09 | 51 |
immune system cancer | 1.67e-09 | 51 |
neuroendocrine tumor | 5.27e-09 | 6 |
myeloid leukemia | 9.32e-09 | 31 |
hematopoietic system disease | 1.56e-07 | 2 |
organ system cancer | 1.88e-07 | 137 |
mixed cell type cancer | 3.51e-07 | 2 |
carcinosarcoma | 3.51e-07 | 2 |