FFCP PHASE1:Hg19::chrX:128657457..128657475,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6594 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11097 | |||
|TSSclassifier=strong | |||
|UniProt=P28370,Q86UA8 | |||
|association_with_transcript=0bp_to_ENST00000371121,NM_003069,NM_139035,uc004eun.3,uc004eup.3,uc011muk.1,uc011mul.1_5end | |||
|description=CAGE_peak_1_at_SMARCA1_5end | |||
|id=chrX:128657457..128657475,- | |||
|ontology_enrichment_celltype=CL:0000055!2.64e-19!180;CL:0002321!5.16e-12!248;CL:0000220!1.54e-11!246;CL:0000187!3.59e-09!54;CL:0000393!3.70e-09!60;CL:0000211!3.70e-09!60;CL:0000680!3.90e-09!57;CL:0000056!3.90e-09!57;CL:0000355!3.90e-09!57;CL:0000057!5.33e-09!75;CL:0000183!9.89e-08!59;CL:0000222!1.14e-07!119 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,9.39e-12,250;CL:0000187,1.50e-09,55;CL:0000393,1.58e-09,61;CL:0000211,1.58e-09,61;CL:0000680,1.65e-09,58;CL:0000056,1.65e-09,58;CL:0000355,1.65e-09,58;CL:0000057,3.27e-09,76;CL:0000222,1.36e-07,121;CL:0000192,4.71e-07,43;CL:0000514,4.71e-07,43 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!1.22e-22!365;UBERON:0000481!8.30e-20!347;UBERON:0000119!8.81e-17!312;UBERON:0000483!1.27e-16!309;UBERON:0005256!1.37e-15!143;UBERON:0002100!2.16e-15!216;UBERON:0000468!3.63e-15!659;UBERON:0000477!7.14e-13!286;UBERON:0000914!1.87e-11!83;UBERON:0002329!1.87e-11!83;UBERON:0003077!1.87e-11!83;UBERON:0003059!1.87e-11!83;UBERON:0007282!1.87e-11!83;UBERON:0009618!1.87e-11!83;UBERON:0007285!1.87e-11!83;UBERON:0000490!2.46e-11!138;UBERON:0003104!3.55e-11!238;UBERON:0009142!3.55e-11!238;UBERON:0000467!4.55e-11!625;UBERON:0004111!5.08e-11!241;UBERON:0000480!8.60e-11!626;UBERON:0001134!1.74e-09!61;UBERON:0002036!1.74e-09!61;UBERON:0003082!1.74e-09!61;UBERON:0004290!2.08e-09!70;UBERON:0002385!2.76e-09!63;UBERON:0001015!2.76e-09!63;UBERON:0000383!2.76e-09!63;UBERON:0000486!2.96e-09!82;UBERON:0000025!2.96e-09!194;UBERON:0000922!8.86e-09!612;UBERON:0003914!1.18e-07!118;UBERON:0000062!2.84e-07!511;UBERON:0002050!2.84e-07!605;UBERON:0005423!2.84e-07!605;UBERON:0000923!4.80e-07!604;UBERON:0005291!4.80e-07!604;UBERON:0006598!4.80e-07!604;UBERON:0002532!4.80e-07!604;UBERON:0000924!8.26e-07!173;UBERON:0006601!8.26e-07!173;UBERON:0001048!8.44e-07!168 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000119,1.30e-15,309;UBERON:0003104,1.63e-15,160;UBERON:0009142,1.63e-15,160;UBERON:0000483,1.85e-15,306;UBERON:0005256,3.43e-14,122;UBERON:0002100,6.89e-13,199;UBERON:0000490,6.93e-12,148;UBERON:0004111,9.52e-11,240;UBERON:0001134,7.31e-10,62;UBERON:0002036,7.31e-10,62;UBERON:0003082,7.31e-10,62;UBERON:0007524,8.11e-10,73;UBERON:0002329,9.02e-10,71;UBERON:0003059,9.02e-10,71;UBERON:0007282,9.02e-10,71;UBERON:0004290,9.02e-10,71;UBERON:0009618,9.02e-10,71;UBERON:0002385,1.18e-09,64;UBERON:0001015,1.18e-09,64;UBERON:0000383,1.18e-09,64;UBERON:0000486,1.32e-09,83;UBERON:0003077,1.57e-09,72;UBERON:0007285,1.57e-09,72;UBERON:0000025,6.63e-09,192;UBERON:0007503,2.24e-08,78;UBERON:0010314,3.09e-08,132;UBERON:0000922,1.10e-07,592;UBERON:0003914,2.14e-07,117;UBERON:0011216,7.57e-07,223 | |||
|phase1_expression=12.5358081696684,9.84862409898522,17.0554828956125,14.0102617694383,16.9845215882369,13.9574163856059,2.53299878168311,8.2123583545488,5.22371256399677,3.93174298402414,3.48900583986214,8.95609625733706,5.01157258634062,28.7137938867308,22.8664189252262,21.5144046864568,19.8889194247912,29.2124036154949,22.4449087443633,9.97280570421982,6.73202281106035,4.38836610069323,18.6053391635187,21.7630335865886,16.3205431473244,0,0.0821005894499457,0,0,0,1.08371286321253,8.27479102031034,6.32532429434325,7.02532619316897,0,0,0.587200878669695,0.553995408531877,0,0,0.223915474239924,0.32389366601898,0.257575567634187,0,0,0,0,0,0.309706370895104,0,0,0,0,1.93645405075148,0,0,0,0.224723484445085,0,0,0,0,0,0,0,1.70215567407342,1.24564449799115,0,0,0.217188844705117,0,2.20966581592539,0.632924774881769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569212969109448,0,0,1.32171328579026,0,0.263384084775077,0,0,0.411202997999018,0,0,0.473447805734733,3.89653456815823,0,0,0,0,0,0,0,0,0,0.741432815810302,1.33770414044857,3.1360657141493,0,0,0,0,0.95569624297229,0,0,0,0.639933055772092,1.24930726552346,0.473554504088034,0,0,0,0.144824403882799,43.8852359365131,18.1089232119982,28.6412138529508,13.7346877906135,11.0294340339896,12.1671075927092,20.6774346233286,10.2193322763554,32.5199771044393,23.5033161310318,28.2828009931866,27.8985430810128,3.64295288292542,1.11235332835329,0.324547393654683,0,0,0.238490624305342,0,1.11437250398869,7.55297147993479,5.16140757063675,4.85996702250632,15.2633144319483,5.87299210693868,4.67700671298115,6.89683389571475,18.864423419361,25.2594046507564,26.1082077956443,5.63961043952806,7.60272105718513,8.05404789908959,9.92690316933846,9.72170337458112,22.3249320710199,20.4321729089815,14.0764350604153,7.66583187329416,9.49265659568129,8.06087673293792,0,0,2.18047026071267,14.9091585508596,20.5141428896619,66.7342271298623,43.5991663538197,10.6400514659507,17.3810056044115,17.0798393167528,13.3200476145266,45.1256001329661,16.1652806483626,19.4519664705016,21.1900398702904,29.9611480729599,4.92075006850973,11.5499228427219,6.84566185853339,4.18456305545043,14.0921398372518,12.4642167163461,12.6405726032024,15.7198711866268,14.3716151254769,17.5653827998801,19.0080457165129,14.5887488274349,3.64064544775211,0.718618141816238,16.4969391674985,14.01327422566,19.9486163148612,17.9980824561144,14.7114141983529,16.375948420819,18.0357171224433,46.6413052791041,22.8506406035867,20.9812582147966,32.7099294731998,26.8967101312326,51.7857485491715,18.611685633159,35.6118061029072,20.1694600683681,64.3706124322492,30.2844166533165,36.5320088410515,59.9966211353078,25.490280851593,15.4300139002544,14.8810856935739,16.0920211148592,14.6270343648392,20.8575037481608,26.9035429692615,23.3549825167732,38.3545903556871,26.9983310436922,33.9428943940522,20.3384392028761,27.0161194041012,8.28809528114883,12.5379340568634,6.49691533502627,3.31259040111563,4.55178663210875,5.06123162755312,4.41175890929576,2.83243277320128,4.03360052488864,4.98875840192608,3.53198637225623,5.00171304030308,6.64339909162183,5.60967095213783,9.0546282492908,4.41026134156626,34.2238594018943,28.5019892836512,17.7236972004421,0,28.7792946190886,32.4263161464213,17.5600456653801,5.62008766288098,7.13755704122579,25.6469993089127,2.28065813717227,2.07986957055916,30.3095818253074,22.1427073502397,58.7043471179108,8.51762041790336,5.09284063834272,7.22965778491473,0,0,0,0,0,10.3107217385455,16.9661949480848,29.9145455181435,9.85143749731331,6.39394664730716,4.98397482914775,0,0,0.829312462163088,2.59415916150531,0.12624243342638,7.36575573789161,6.49380323449072,10.5495702489042,1.71072446022705,9.97426679222238,18.320926528479,17.4354123904653,11.5495016875722,10.0270815831654,14.3743040209062,29.8617663400467,0,7.607724773004,25.7959973087324,19.7614130131596,5.40135485950498,2.83698264046557,5.86128793835419,36.1734323955113,7.5967024754802,9.05564370458846,8.14340460734338,33.0514512330568,4.75171123760058,36.7756040012695,25.2744702994085,27.0926806103375,0,0,0,29.9531069364478,18.3779097334582,12.8373214536647,16.0707250401013,9.04095819221687,12.1761455003129,0,0,0,0.128343036279748,32.0159226520304,22.1237751557957,13.1459098172208,10.8885572467327,10.8449587781038,0,0,0,26.1332877361768,17.005797716029,15.4621063508849,15.3898437532797,11.9547422494098,13.2470028628505,21.6711617736519,12.6397361885642,9.09630016223939,5.17365356462525,17.2698655619213,14.933902651878,25.1093645812759,5.48243240895674,5.49029478097369,0,0,0.106727557803444,4.24378600024763,4.99306318531491,8.76931850656073,15.1345762769454,55.8601582768547,14.0330047216537,24.858994955606,27.1204842005353,23.4846724869667,13.3576259800492,8.48153315914606,9.23320971628261,15.8505411106652,15.058378446325,9.99409254755649,10.0313343161046,19.8501405600252,1.47329582297434,15.6147649503865,6.00900854422166,12.5879438361047,4.96319574198153,24.3368465249951,10.980896768476,4.38417673959782,23.6435648720042,6.8240030442538,5.61309227412502,20.2960961136011,3.0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| |||
|short_description=p1@SMARCA1 | |||
}} |
Revision as of 06:53, 23 January 2014
Short description: | p1@SMARCA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SMARCA1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000371121, NM_003069, NM_139035, uc004eun.3, uc004eup.3, uc011muk.1, uc011mul.1_5end |
EntrezGene: | SMARCA1 |
HGNC: | 11097 |
UniProt: | P28370Q86UA8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 9.39e-12 | 250 |
muscle cell | 1.50e-09 | 55 |
electrically responsive cell | 1.58e-09 | 61 |
electrically active cell | 1.58e-09 | 61 |
muscle precursor cell | 1.65e-09 | 58 |
myoblast | 1.65e-09 | 58 |
multi-potent skeletal muscle stem cell | 1.65e-09 | 58 |
fibroblast | 3.27e-09 | 76 |
mesodermal cell | 1.36e-07 | 121 |
smooth muscle cell | 4.71e-07 | 43 |
smooth muscle myoblast | 4.71e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
cell layer | 1.30e-15 | 309 |
mesenchyme | 1.63e-15 | 160 |
entire embryonic mesenchyme | 1.63e-15 | 160 |
epithelium | 1.85e-15 | 306 |
trunk mesenchyme | 3.43e-14 | 122 |
trunk | 6.89e-13 | 199 |
unilaminar epithelium | 6.93e-12 | 148 |
anatomical conduit | 9.52e-11 | 240 |
skeletal muscle tissue | 7.31e-10 | 62 |
striated muscle tissue | 7.31e-10 | 62 |
myotome | 7.31e-10 | 62 |
dense mesenchyme tissue | 8.11e-10 | 73 |
somite | 9.02e-10 | 71 |
presomitic mesoderm | 9.02e-10 | 71 |
presumptive segmental plate | 9.02e-10 | 71 |
dermomyotome | 9.02e-10 | 71 |
trunk paraxial mesoderm | 9.02e-10 | 71 |
muscle tissue | 1.18e-09 | 64 |
musculature | 1.18e-09 | 64 |
musculature of body | 1.18e-09 | 64 |
multilaminar epithelium | 1.32e-09 | 83 |
paraxial mesoderm | 1.57e-09 | 72 |
presumptive paraxial mesoderm | 1.57e-09 | 72 |
tube | 6.63e-09 | 192 |
epithelial vesicle | 2.24e-08 | 78 |
structure with developmental contribution from neural crest | 3.09e-08 | 132 |
embryo | 1.10e-07 | 592 |
epithelial tube | 2.14e-07 | 117 |
organ system subdivision | 7.57e-07 | 223 |