Personal tools

CL:0002429: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{CL
{{CL
|id=CL:0002429
|alt_id=
|name=CD69-positive double-positive thymocyte
|namespace=cell;;efo
|def="A double-positive thymocyte that is CD69-positive and has begun positive selection." [GOC:tfm, http://www.immgen.org/index_content.html]
|xref=
|is_a=CL:0000809
|synonym="T.DP69+.Th" EXACT []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2010-10-21T02:11:52Z
|def="A double-positive thymocyte that is CD69-positive and has begun positive selection." [GOC:tfm, http://www.immgen.org/index_content.html]
|subset=
|derives_from=
|derives_from=
|develops_from=CL:0002428
|develops_from=CL:0002428
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002429
|is_a=CL:0000809
|is_obsolete=
|located_in=
|located_in=
|name=CD69-positive double-positive thymocyte
|namespace=cell;;efo
|obo_creation_date=2010-10-21T02:11:52Z
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="T.DP69+.Th" EXACT []
|union_of=
|xref=
}}
}}

Revision as of 10:27, 12 September 2014

Name:CD69-positive double-positive thymocyte
Namespace:cell;;efo
Definition:"A double-positive thymocyte that is CD69-positive and has begun positive selection." [GOC:tfm, http://www.immgen.org/index_content.html]
Synonyms: "T.DP69+.Th" EXACT []
Created by:tmeehan
Creation date:2010-10-21T02:11:52Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000809(double-positive, alpha-beta thymocyte)
develops_from:CL:0002428(double-positive blast)



Children


develops from:CL:0002431 (CD4-positive, CD8-intermediate double-positive thymocyte)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.



Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002429 (CD69-positive double-positive thymocyte), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.55e-98FFCP PHASE1:Hg19::chr2:162762361..162762364,+#_c8e735064bb15e067ab8dc5556b4b480p@chr2:162762361..162762364, +
2.55e-98FFCP PHASE2:Hg19::chr2:162762361..162762364,+#_c8e735064bb15e067ab8dc5556b4b480p@chr2:162762361..162762364, +
2.55e-98FFCP PHASE1:Hg19::chr1:183622379..183622388,-#_c8e735064bb15e067ab8dc5556b4b480p4@APOBEC4
2.55e-98FFCP PHASE2:Hg19::chr1:183622379..183622388,-#_c8e735064bb15e067ab8dc5556b4b480p4@APOBEC4
1.36e-86FFCP PHASE1:Mm9::chrX:54476786..54476810,+#_8f7fe110d7a6ba193cb564c79147655fp@chrX:54476786..54476810, +
1.36e-86FFCP PHASE1:Mm9::chr13:30878406..30878419,+#_8f7fe110d7a6ba193cb564c79147655fp@chr13:30878406..30878419, +
1.36e-86FFCP PHASE2:Mm9::chr13:30878406..30878419,+#_8f7fe110d7a6ba193cb564c79147655fp@chr13:30878406..30878419, +
1.36e-86FFCP PHASE2:Mm9::chrX:54476786..54476810,+#_8f7fe110d7a6ba193cb564c79147655fp@chrX:54476786..54476810, +
1.01e-74FFCP PHASE1:Mm9::chr16:52032670..52032685,+#_3d704f5e5a88c65211a6f14d80282679p@chr16:52032670..52032685, +
1.01e-74FFCP PHASE2:Mm9::chr16:52032670..52032685,+#_3d704f5e5a88c65211a6f14d80282679p@chr16:52032670..52032685, +
2.41e-74FFCP PHASE1:Mm9::chr14:54795946..54795960,+#_c10e5dc1ea191d4bdb6085a95d477e95p1@ENSMUST00000103701
2.41e-74FFCP PHASE2:Mm9::chr14:54795946..54795960,+#_c10e5dc1ea191d4bdb6085a95d477e95p1@ENSMUST00000103701
2.41e-74FFCP PHASE2:Mm9::chr16:93777453..93777464,+#_c10e5dc1ea191d4bdb6085a95d477e95p@chr16:93777453..93777464, +
2.41e-74FFCP PHASE1:Mm9::chr16:93777453..93777464,+#_c10e5dc1ea191d4bdb6085a95d477e95p@chr16:93777453..93777464, +
2.48e-72FFCP PHASE1:Mm9::chr11:11587720..11587735,+#_10f18fe3d95d5857dd41c06d56e54ac1p@chr11:11587720..11587735, +
2.48e-72FFCP PHASE2:Mm9::chr11:11587720..11587735,+#_10f18fe3d95d5857dd41c06d56e54ac1p@chr11:11587720..11587735, +
2.48e-72FFCP PHASE1:Mm9::chr11:11592840..11592849,+#_10f18fe3d95d5857dd41c06d56e54ac1p@chr11:11592840..11592849, +
2.48e-72FFCP PHASE2:Mm9::chr13:30853488..30853499,+#_10f18fe3d95d5857dd41c06d56e54ac1p@chr13:30853488..30853499, +
2.48e-72FFCP PHASE1:Mm9::chr14:54827490..54827502,+#_10f18fe3d95d5857dd41c06d56e54ac1p@chr14:54827490..54827502, +
2.48e-72FFCP PHASE2:Mm9::chr11:11592840..11592849,+#_10f18fe3d95d5857dd41c06d56e54ac1p@chr11:11592840..11592849, +
2.48e-72FFCP PHASE1:Mm9::chr13:30853488..30853499,+#_10f18fe3d95d5857dd41c06d56e54ac1p@chr13:30853488..30853499, +
2.48e-72FFCP PHASE1:Mm9::chr15:80403112..80403122,+#_10f18fe3d95d5857dd41c06d56e54ac1p12@Grap2
2.48e-72FFCP PHASE2:Mm9::chr15:80403112..80403122,+#_10f18fe3d95d5857dd41c06d56e54ac1p12@Grap2
2.48e-72FFCP PHASE2:Mm9::chr14:122362270..122362291,-#_10f18fe3d95d5857dd41c06d56e54ac1p@chr14:122362270..122362291, -
2.48e-72FFCP PHASE2:Mm9::chr14:54827490..54827502,+#_10f18fe3d95d5857dd41c06d56e54ac1p@chr14:54827490..54827502, +
2.48e-72FFCP PHASE1:Mm9::chr14:122362270..122362291,-#_10f18fe3d95d5857dd41c06d56e54ac1p@chr14:122362270..122362291, -
2.39e-66FFCP PHASE2:Hg19::chr9:75772924..75772957,+#_a1f80b5aa84a817dad300123d434d83ap17@ANXA1
2.39e-66FFCP PHASE1:Hg19::chr9:75772924..75772957,+#_a1f80b5aa84a817dad300123d434d83ap17@ANXA1
4.66e-66FFCP PHASE1:Hg19::chr2:204816181..204816219,-#_364ff75275622449f78254b5d7bf7f7ap@chr2:204816181..204816219, -
4.66e-66FFCP PHASE1:Hg19::chr20:37493438..37493456,-#_364ff75275622449f78254b5d7bf7f7ap@chr20:37493438..37493456, -
4.66e-66FFCP PHASE1:Hg19::chr11:118209514..118209525,+#_364ff75275622449f78254b5d7bf7f7ap@chr11:118209514..118209525, +
4.66e-66FFCP PHASE2:Hg19::chr20:37493438..37493456,-#_364ff75275622449f78254b5d7bf7f7ap@chr20:37493438..37493456, -
4.66e-66FFCP PHASE2:Hg19::chr2:204816181..204816219,-#_364ff75275622449f78254b5d7bf7f7ap@chr2:204816181..204816219, -
4.66e-66FFCP PHASE2:Hg19::chr11:118209514..118209525,+#_364ff75275622449f78254b5d7bf7f7ap@chr11:118209514..118209525, +
1.05e-65FFCP PHASE1:Mm9::chr14:53242248..53242261,+#_8f9ebce8fe679acac4ca7a816da9a056p@chr14:53242248..53242261, +
1.05e-65FFCP PHASE2:Mm9::chr14:53242248..53242261,+#_8f9ebce8fe679acac4ca7a816da9a056p@chr14:53242248..53242261, +
1.74e-65FFCP PHASE1:Mm9::chr5:123439274..123439290,+#_964f7566e5afcb9d3b5be5fa41b62f65p4@ENSMUST00000148466, p4@uc008zmw.1
1.74e-65FFCP PHASE2:Mm9::chr5:123439274..123439290,+#_964f7566e5afcb9d3b5be5fa41b62f65p4@ENSMUST00000148466, p4@uc008zmw.1
2.25e-65FFCP PHASE1:Mm9::chr1:140069290..140069308,+#_496a419a47aaa946848460ba323916b5p@chr1:140069290..140069308, +
2.25e-65FFCP PHASE2:Mm9::chr1:140069290..140069308,+#_496a419a47aaa946848460ba323916b5p@chr1:140069290..140069308, +
2.25e-65FFCP PHASE1:Mm9::chr15:80403104..80403111,+#_496a419a47aaa946848460ba323916b5p10@Grap2
2.25e-65FFCP PHASE1:Mm9::chr5:123465978..123465989,-#_496a419a47aaa946848460ba323916b5p@chr5:123465978..123465989, -
2.25e-65FFCP PHASE2:Mm9::chr5:123465978..123465989,-#_496a419a47aaa946848460ba323916b5p@chr5:123465978..123465989, -
2.25e-65FFCP PHASE2:Mm9::chr15:80403104..80403111,+#_496a419a47aaa946848460ba323916b5p10@Grap2
2.9e-65FFCP PHASE2:Mm9::chr6:41504409..41504422,-#_2ca40f919396f5a8a956bb483a7f1b05p@chr6:41504409..41504422, -
2.9e-65FFCP PHASE1:Mm9::chr11:46200242..46200255,+#_2ca40f919396f5a8a956bb483a7f1b05p@chr11:46200242..46200255, +
2.9e-65FFCP PHASE2:Mm9::chr11:46200242..46200255,+#_2ca40f919396f5a8a956bb483a7f1b05p@chr11:46200242..46200255, +
2.9e-65FFCP PHASE1:Mm9::chr14:54817583..54817593,-#_2ca40f919396f5a8a956bb483a7f1b05p@chr14:54817583..54817593, -
2.9e-65FFCP PHASE1:Mm9::chr6:41504409..41504422,-#_2ca40f919396f5a8a956bb483a7f1b05p@chr6:41504409..41504422, -
2.9e-65FFCP PHASE2:Mm9::chr14:54817583..54817593,-#_2ca40f919396f5a8a956bb483a7f1b05p@chr14:54817583..54817593, -
3.74e-65FFCP PHASE2:Mm9::chr4:32328217..32328228,-#_615e4eaae3ec4abe814fb18e2b160bacp@chr4:32328217..32328228, -
3.74e-65FFCP PHASE1:Mm9::chr4:32328217..32328228,-#_615e4eaae3ec4abe814fb18e2b160bacp@chr4:32328217..32328228, -
6.21e-65FFCP PHASE2:Mm9::chr11:46200110..46200124,-#_3316732866bbda237504216fa1580b24p@chr11:46200110..46200124, -
6.21e-65FFCP PHASE1:Mm9::chr11:46200110..46200124,-#_3316732866bbda237504216fa1580b24p@chr11:46200110..46200124, -
6.21e-65FFCP PHASE1:Mm9::chr13:105412781..105412798,+#_3316732866bbda237504216fa1580b24p@chr13:105412781..105412798, +
6.21e-65FFCP PHASE1:Mm9::chr5:123465955..123465966,-#_3316732866bbda237504216fa1580b24p@chr5:123465955..123465966, -
6.21e-65FFCP PHASE2:Mm9::chr13:105412781..105412798,+#_3316732866bbda237504216fa1580b24p@chr13:105412781..105412798, +
6.21e-65FFCP PHASE2:Mm9::chr5:123465955..123465966,-#_3316732866bbda237504216fa1580b24p@chr5:123465955..123465966, -
1.0e-60FFCP PHASE1:Mm9::chr2:11097490..11097500,+#_5365dff2f7be897561039b993cdc3943p@chr2:11097490..11097500, +
1.0e-60FFCP PHASE2:Mm9::chr2:11097490..11097500,+#_5365dff2f7be897561039b993cdc3943p@chr2:11097490..11097500, +
1.33e-60FFCP PHASE2:Mm9::chr10:128157769..128157772,-#_7a2a0642dbae0a242aee153ca6a84168p@chr10:128157769..128157772, -
1.33e-60FFCP PHASE2:Mm9::chr5:108160486..108160515,-#_7a2a0642dbae0a242aee153ca6a84168p@chr5:108160486..108160515, -
1.33e-60FFCP PHASE1:Mm9::chr7:150943007..150943022,+#_7a2a0642dbae0a242aee153ca6a84168p@chr7:150943007..150943022, +
1.33e-60FFCP PHASE1:Mm9::chr12:70398221..70398232,-#_7a2a0642dbae0a242aee153ca6a84168p@chr12:70398221..70398232, -
1.33e-60FFCP PHASE2:Mm9::chr12:70398221..70398232,-#_7a2a0642dbae0a242aee153ca6a84168p@chr12:70398221..70398232, -
1.33e-60FFCP PHASE2:Mm9::chr7:150943007..150943022,+#_7a2a0642dbae0a242aee153ca6a84168p@chr7:150943007..150943022, +
1.33e-60FFCP PHASE1:Mm9::chr5:108160486..108160515,-#_7a2a0642dbae0a242aee153ca6a84168p@chr5:108160486..108160515, -
1.33e-60FFCP PHASE1:Mm9::chr10:128157769..128157772,-#_7a2a0642dbae0a242aee153ca6a84168p@chr10:128157769..128157772, -
1.77e-60FFCP PHASE2:Mm9::chr14:53414758..53414769,+#_4c9ad8dc1d9f895bd0c1f36b9f723006p1@ENSMUST00000103582
1.77e-60FFCP PHASE1:Mm9::chr14:53414758..53414769,+#_4c9ad8dc1d9f895bd0c1f36b9f723006p1@ENSMUST00000103582
2.34e-60FFCP PHASE2:Mm9::chr2:73290853..73290866,+#_89a3b3d3856be64193baa7ea133925aap@chr2:73290853..73290866, +
2.34e-60FFCP PHASE1:Mm9::chr2:73290853..73290866,+#_89a3b3d3856be64193baa7ea133925aap@chr2:73290853..73290866, +
4.1e-60FFCP PHASE1:Mm9::chr1:138476217..138476228,+#_cc9821662571280e5cbfa97789a88013p@chr1:138476217..138476228, +
4.1e-60FFCP PHASE2:Mm9::chr2:11181142..11181148,-#_cc9821662571280e5cbfa97789a88013p@chr2:11181142..11181148, -
4.1e-60FFCP PHASE1:Mm9::chr2:11181142..11181148,-#_cc9821662571280e5cbfa97789a88013p@chr2:11181142..11181148, -
4.1e-60FFCP PHASE2:Mm9::chr1:138476217..138476228,+#_cc9821662571280e5cbfa97789a88013p@chr1:138476217..138476228, +
4.1e-60FFCP PHASE2:Mm9::chr9:14708434..14708444,-#_cc9821662571280e5cbfa97789a88013p8@Folr4
4.1e-60FFCP PHASE1:Mm9::chr9:14708434..14708444,-#_cc9821662571280e5cbfa97789a88013p8@Folr4
6.9e-59FFCP PHASE2:Mm9::chrX:54477240..54477286,+#_1d1c0004de0c00c2c67516024a4cb748p@chrX:54477240..54477286, +
6.9e-59FFCP PHASE1:Mm9::chrX:54465221..54465232,+#_1d1c0004de0c00c2c67516024a4cb748p4@Cd40lg
6.9e-59FFCP PHASE1:Mm9::chrX:54477240..54477286,+#_1d1c0004de0c00c2c67516024a4cb748p@chrX:54477240..54477286, +
6.9e-59FFCP PHASE2:Mm9::chr11:87558695..87558707,+#_1d1c0004de0c00c2c67516024a4cb748p@chr11:87558695..87558707, +
6.9e-59FFCP PHASE2:Mm9::chrX:54465221..54465232,+#_1d1c0004de0c00c2c67516024a4cb748p4@Cd40lg
6.9e-59FFCP PHASE1:Mm9::chr11:87558695..87558707,+#_1d1c0004de0c00c2c67516024a4cb748p@chr11:87558695..87558707, +
1.09e-58FFCP PHASE2:Mm9::chr4:32339235..32339263,+#_b4619c10f770803ea79f33729635f66fp@chr4:32339235..32339263, +
1.09e-58FFCP PHASE1:Mm9::chr4:32339235..32339263,+#_b4619c10f770803ea79f33729635f66fp@chr4:32339235..32339263, +
1.71e-58FFCP PHASE2:Mm9::chr16:23175296..23175310,+#_97d0639719b17d3fe32eed2e4bdba4e1p3@uc007ytl.1
1.71e-58FFCP PHASE1:Mm9::chr16:23175296..23175310,+#_97d0639719b17d3fe32eed2e4bdba4e1p3@uc007ytl.1
1.71e-58FFCP PHASE1:Mm9::chr19:10904395..10904400,-#_97d0639719b17d3fe32eed2e4bdba4e1p5@Cd6
1.71e-58FFCP PHASE2:Mm9::chr19:10904395..10904400,-#_97d0639719b17d3fe32eed2e4bdba4e1p5@Cd6
2.15e-58FFCP PHASE2:Mm9::chr14:54831123..54831141,+#_fad508345a4da47ab0ad9b36a2a1747ep1@ENSMUST00000103733
2.15e-58FFCP PHASE1:Mm9::chr14:54831123..54831141,+#_fad508345a4da47ab0ad9b36a2a1747ep1@ENSMUST00000103733
2.69e-58FFCP PHASE2:Mm9::chr4:32339511..32339518,+#_5efb1783043ace8ea25c041d29b215f4p@chr4:32339511..32339518, +
2.69e-58FFCP PHASE1:Mm9::chr4:32339511..32339518,+#_5efb1783043ace8ea25c041d29b215f4p@chr4:32339511..32339518, +
2.69e-58FFCP PHASE2:Mm9::chr4:151490126..151490137,+#_5efb1783043ace8ea25c041d29b215f4p3@Tnfrsf25
2.69e-58FFCP PHASE1:Mm9::chr4:151490126..151490137,+#_5efb1783043ace8ea25c041d29b215f4p3@Tnfrsf25
3.38e-58FFCP PHASE1:Mm9::chr6:48656532..48656548,+#_f5415669c2d329b103b2981e21dfdec8p@chr6:48656532..48656548, +
3.38e-58FFCP PHASE2:Mm9::chr6:48656532..48656548,+#_f5415669c2d329b103b2981e21dfdec8p@chr6:48656532..48656548, +
3.91e-58FFCP PHASE1:Mm9::chr19:46380462..46380471,+#_3feb31f8425be5e049ebe77dc1982879p11@Nfkb2
3.91e-58FFCP PHASE2:Mm9::chrX:54453687..54453696,+#_3feb31f8425be5e049ebe77dc1982879p4@Gm14718

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=CL:0002429&oldid=3272135"