Personal tools

UBERON:0000122: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0000122
|alt_id=UBERON:0005163
|name=neuron projection bundle
|namespace=
|def="A fasciculated bundle of neuron projections (GO:0043005), largely or completely lacking synapses." [CARO:0001001, FBbt:00005099, FBC:DOS]
|xref=CARO:0001001;;FBbt:00005099
|is_a=UBERON:0004121;;UBERON:0005162
|synonym="funiculus" EXACT [];;"nerve fiber bundle" EXACT [FBbt:00005099];;"neural fiber bundle" EXACT []
|comment=
|comment=
|alt_id=UBERON:0005163
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A fasciculated bundle of neuron projections (GO:0043005), largely or completely lacking synapses." [CARO:0001001, FBbt:00005099, FBC:DOS]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000122
|is_a=UBERON:0005162
|is_obsolete=
|located_in=
|located_in=
|name=neuron projection bundle
|namespace=
|obo_creation_date=
|part_of=UBERON:0001016
|part_of=UBERON:0001016
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="funiculus" EXACT [];;"nerve fiber bundle" EXACT [FBbt:00005099];;"neural fiber bundle" EXACT []
|union_of=
|xref=CARO:0001001;;FBbt:00005099
}}
}}

Revision as of 10:51, 12 September 2014

Name:neuron projection bundle
Definition:"A fasciculated bundle of neuron projections (GO:0043005), largely or completely lacking synapses." [CARO:0001001, FBbt:00005099, FBC:DOS]
Xrefs:
links:

CARO:0001001

FBbt:00005099
Synonyms: "funiculus" EXACT []
"nerve fiber bundle" EXACT [FBbt:00005099]
"neural fiber bundle" EXACT []
Alt_id: UBERON:0005163

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0005162(multi cell component structure)
part_of:UBERON:0001016(nervous system)



Children

is a:UBERON:0001018 (axon tract),UBERON:0001021 (nerve)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000122 (neuron projection bundle), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data