CL:0002319: Difference between revisions
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|located_in= | |located_in= | ||
|name=neural cell | |name=neural cell | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date=2010-09-15T01:34:57Z | |obo_creation_date=2010-09-15T01:34:57Z | ||
|part_of=UBERON:0001016 | |part_of=UBERON:0001016 |
Latest revision as of 16:41, 12 September 2014
Name: | neural cell | |
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Namespace: | FANTOM | |
Definition: | "A cell that is part of the nervous system." [GOC:tfm, ISBN:0618947256] | |
Xrefs: |
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Created by: | tmeehan | |
Creation date: | 2010-09-15T01:34:57Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | CL:0000548(animal cell),CL:0002371(somatic cell) |
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part_of: | UBERON:0001016(nervous system) |
Children
is a: | CL:0000047 (neuronal stem cell),CL:0000095 (neuron associated cell),CL:0000540 (neuron),CL:0000708 (leptomeningeal cell),CL:0000878 (central nervous system macrophage),CL:0002549 (fibroblast of choroid plexus),CL:0002575 (central nervous system pericyte),CL:0002576 (perineural cell),CL:0002590 (smooth muscle cell of the brain vasculature) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10413-106B8 (glioma cell line:GI-1)
- 10425-106D2 (astrocytoma cell line:TM-31)
- 10442-106F1 (schwannoma cell line:HS-PSS)
- 10444-106F3 (glioblastoma cell line:A172)
- 10456-106G6
- 10475-106I7 (retinoblastoma cell line:Y79)
- 10485-107A8 (glioblastoma cell line:T98G)
- 10559-108A1
- 10669-109D3
- 10670-109D4
... further results Mouse (Mus musculus)
- 10413-106B8 (glioma cell line:GI-1)
- 10425-106D2 (astrocytoma cell line:TM-31)
- 10442-106F1 (schwannoma cell line:HS-PSS)
- 10444-106F3 (glioblastoma cell line:A172)
- 10456-106G6
- 10475-106I7 (retinoblastoma cell line:Y79)
- 10485-107A8 (glioblastoma cell line:T98G)
- 10559-108A1
- 10669-109D3
- 10670-109D4
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002319 (neural cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data