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CL:0002319: Difference between revisions

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Line 13: Line 13:
|located_in=
|located_in=
|name=neural cell
|name=neural cell
|namespace=cell
|namespace=FANTOM
|obo_creation_date=2010-09-15T01:34:57Z
|obo_creation_date=2010-09-15T01:34:57Z
|part_of=UBERON:0001016
|part_of=UBERON:0001016

Latest revision as of 16:41, 12 September 2014

Name:neural cell
Namespace:FANTOM
Definition:"A cell that is part of the nervous system." [GOC:tfm, ISBN:0618947256]
Xrefs:
links:
FMA:70333
Created by:tmeehan
Creation date:2010-09-15T01:34:57Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0000548(animal cell),CL:0002371(somatic cell)
part_of:UBERON:0001016(nervous system)



Children


is a:CL:0000047 (neuronal stem cell),CL:0000095 (neuron associated cell),CL:0000540 (neuron),CL:0000708 (leptomeningeal cell),CL:0000878 (central nervous system macrophage),CL:0002549 (fibroblast of choroid plexus),CL:0002575 (central nervous system pericyte),CL:0002576 (perineural cell),CL:0002590 (smooth muscle cell of the brain vasculature)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002319 (neural cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data