DOID:0050686: Difference between revisions
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|located_in= | |located_in= | ||
|name=organ system cancer | |name=organ system cancer | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date=2011-06-13T03:28:33Z | |obo_creation_date=2011-06-13T03:28:33Z | ||
|part_of= | |part_of= |
Latest revision as of 16:47, 12 September 2014
Name: | organ system cancer |
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Namespace: | FANTOM |
Definition: | "A cancer that is classified based on the organ it starts in." [url:http://cancerguide.org/basic.html] |
Created by: | snadendla |
Creation date: | 2011-06-13T03:28:33Z |
Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | DOID:162(cancer) |
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Children
is a: | DOID:0050615 (respiratory system cancer),DOID:0060083 (immune system cancer),DOID:0060100 (musculoskeletal system cancer),DOID:0060122 (integumentary system cancer),DOID:170 (endocrine gland cancer),DOID:193 (reproductive organ cancer),DOID:3093 (nervous system cancer),DOID:3119 (gastrointestinal system cancer),DOID:3996 (urinary system cancer),DOID:5093 (thoracic cancer) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples
Human (Homo sapiens)
- 10399-106A3 (acute myeloid leukemia (FAB M5) cell line:THP-1 (fresh))
- 10400-106A4 (acute myeloid leukemia (FAB M5) cell line:THP-1 (revived))
- 10405-106A9 (acute myeloid leukemia (FAB M5) cell line:THP-1 (thawed))
- 10408-106B3 (lung adenocarcinoma cell line:PC-14)
- 10409-106B4 (chronic myelogenous leukemia cell line:KU812)
- 10410-106B5 (extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS)
- 10413-106B8 (glioma cell line:GI-1)
- 10414-106B9 (maxillary sinus tumor cell line:HSQ-89)
- 10416-106C2 (chronic lymphocytic leukemia (T-CLL) cell line:SKW-3)
- 10417-106C3 (papillotubular adenocarcinoma cell line:TGBC18TKB)
... further results Mouse (Mus musculus)
- 10399-106A3 (acute myeloid leukemia (FAB M5) cell line:THP-1 (fresh))
- 10400-106A4 (acute myeloid leukemia (FAB M5) cell line:THP-1 (revived))
- 10405-106A9 (acute myeloid leukemia (FAB M5) cell line:THP-1 (thawed))
- 10408-106B3 (lung adenocarcinoma cell line:PC-14)
- 10409-106B4 (chronic myelogenous leukemia cell line:KU812)
- 10410-106B5 (extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS)
- 10413-106B8 (glioma cell line:GI-1)
- 10414-106B9 (maxillary sinus tumor cell line:HSQ-89)
- 10416-106C2 (chronic lymphocytic leukemia (T-CLL) cell line:SKW-3)
- 10417-106C3 (papillotubular adenocarcinoma cell line:TGBC18TKB)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:0050686 (organ system cancer), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data