UBERON:0000065: Difference between revisions
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|located_in= | |located_in= | ||
|name=respiratory tract | |name=respiratory tract | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0001004 | |part_of=UBERON:0001004 | ||
Latest revision as of 17:05, 12 September 2014
| Name: | respiratory tract | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "anatomical structure that is part of the respiratory system. In mammals consists of upper and lower tracts" [UBERON:cjm] | ||
| Xrefs: |
|
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0001005(respiratory airway),UBERON:0004119(endoderm-derived structure) |
|---|---|
| develops_from: | UBERON:0007026(primitive gut),UBERON:0008947(respiratory primordium) |
| part_of: | UBERON:0001004(respiratory system) |
Children
| part of: | UBERON:0000072 (segment of respiratory tract),UBERON:0000117 (respiratory tube),UBERON:0001737 (larynx),CL:0002368 (respiratory epithelial cell),UBERON:0004802 (respiratory tract epithelium) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10019-101D1 (lung, adult, pool1)
- 10029-101E2 (trachea, adult, pool1)
- 10058-101H4 (trachea, fetal, donor1)
- 10068-101I5 (lung, fetal, donor1)
- 10075-102A3 (lung, right lower lobe, adult, donor1)
- 10090-102B9
- 10099-102C9
- 10275-104E5
- 10303-104H6
- 10331-105B7
... further results Mouse (Mus musculus)
- 10019-101D1 (lung, adult, pool1)
- 10029-101E2 (trachea, adult, pool1)
- 10058-101H4 (trachea, fetal, donor1)
- 10068-101I5 (lung, fetal, donor1)
- 10075-102A3 (lung, right lower lobe, adult, donor1)
- 10090-102B9
- 10099-102C9
- 10275-104E5
- 10303-104H6
- 10331-105B7
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000065 (respiratory tract), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.27e-40 | FFCP PHASE2:Mm9::chr2:26212358..26212425,-#_0225589fa37d78424796a3e1d9eee75a | p@chr2:26212358..26212425, - |
| 1.27e-40 | FFCP PHASE1:Mm9::chr2:26212358..26212425,-#_0225589fa37d78424796a3e1d9eee75a | p@chr2:26212358..26212425, - |
| 4.01e-37 | FFCP PHASE2:Mm9::chr6:41483113..41483131,+#_757fde99c9d877af44b6f2657ebe2109 | p4@uc009bpa.1 |
| 4.01e-37 | FFCP PHASE1:Mm9::chr6:41483113..41483131,+#_757fde99c9d877af44b6f2657ebe2109 | p4@uc009bpa.1 |
| 6.88e-37 | FFCP PHASE1:Mm9::chr6:41483037..41483046,+#_d35526877e60316eb714ab496ce28cad | p8@uc009bpa.1 |
| 6.88e-37 | FFCP PHASE2:Mm9::chr6:41483037..41483046,+#_d35526877e60316eb714ab496ce28cad | p8@uc009bpa.1 |
| 1.84e-35 | FFCP PHASE2:Mm9::chr6:41485075..41485096,+#_a7018805ad22d379ec34124d9bcd80f7 | p1@ENSMUST00000103288, p1@uc009bpl.1 |
| 1.84e-35 | FFCP PHASE1:Mm9::chr6:41485075..41485096,+#_a7018805ad22d379ec34124d9bcd80f7 | p1@ENSMUST00000103288, p1@uc009bpl.1 |
| 2.88e-35 | FFCP PHASE1:Mm9::chr11:52095797..52095809,-#_a2ac2e8d2eb2e7762c9c7f4ff6f1cb47 | p5@Tcf7 |
| 2.88e-35 | FFCP PHASE2:Mm9::chr11:52095797..52095809,-#_a2ac2e8d2eb2e7762c9c7f4ff6f1cb47 | p5@Tcf7 |
| 6.17e-35 | FFCP PHASE2:Mm9::chr6:41491752..41491776,-#_79fe887cf110986e31772323d3cc8ed6 | p@chr6:41491752..41491776, - |
| 6.17e-35 | FFCP PHASE2:Mm9::chr12:108361918..108361930,-#_79fe887cf110986e31772323d3cc8ed6 | p@chr12:108361918..108361930, - |
| 6.17e-35 | FFCP PHASE1:Mm9::chr6:41491752..41491776,-#_79fe887cf110986e31772323d3cc8ed6 | p@chr6:41491752..41491776, - |
| 6.17e-35 | FFCP PHASE1:Mm9::chr12:108361918..108361930,-#_79fe887cf110986e31772323d3cc8ed6 | p@chr12:108361918..108361930, - |
| 7.27e-35 | FFCP PHASE2:Mm9::chr6:33991787..33991793,-#_94f04d723911a86521a248f2c3d0fd90 | p@chr6:33991787..33991793, - |
| 7.27e-35 | FFCP PHASE1:Mm9::chr6:33991787..33991793,-#_94f04d723911a86521a248f2c3d0fd90 | p@chr6:33991787..33991793, - |
| 5.9e-34 | FFCP PHASE2:Mm9::chr6:41483173..41483188,+#_5d4e6f12a190a89fc229ef1fe93d6bbc | p2@ENSMUST00000103283 |
| 5.9e-34 | FFCP PHASE1:Mm9::chr6:41483173..41483188,+#_5d4e6f12a190a89fc229ef1fe93d6bbc | p2@ENSMUST00000103283 |
| 5.93e-34 | FFCP PHASE2:Hg19::chr2:234590530..234590553,+#_7ed0399b8bf25876d4dbb1f560d5eefb | p1@UGT1A7 |
| 5.93e-34 | FFCP PHASE1:Hg19::chr2:234590530..234590553,+#_7ed0399b8bf25876d4dbb1f560d5eefb | p1@UGT1A7 |
| 6.41e-34 | FFCP PHASE1:Hg19::chr17:19651668..19651682,-#_ec72253c8dc8e80f112fad940fbfd0db | p2@ALDH3A1 |
| 6.41e-34 | FFCP PHASE2:Hg19::chr17:19651668..19651682,-#_ec72253c8dc8e80f112fad940fbfd0db | p2@ALDH3A1 |
| 6.71e-34 | FFCP PHASE2:Mm9::chr6:41484803..41484826,+#_216f0dbf4aba502b0b1c4c808523d1aa | p1@ENSMUST00000103287, p1@uc009bpi.1, p1@uc009bpj.1 |
| 6.71e-34 | FFCP PHASE1:Mm9::chr6:41484803..41484826,+#_216f0dbf4aba502b0b1c4c808523d1aa | p1@ENSMUST00000103287, p1@uc009bpi.1, p1@uc009bpj.1 |
| 2.01e-33 | FFCP PHASE1:Mm9::chr7:25692688..25692751,+#_1172f61d5bb29f290b7bc335dd5863ec | p5@Arhgef1 |
| 2.01e-33 | FFCP PHASE2:Mm9::chr7:25692688..25692751,+#_1172f61d5bb29f290b7bc335dd5863ec | p5@Arhgef1 |
| 2.39e-33 | FFCP PHASE1:Mm9::chr6:41494001..41494028,+#_47760f89575d92dded6f4b1041cd5bfb | p@chr6:41494001..41494028, + |
| 2.39e-33 | FFCP PHASE2:Mm9::chr6:41494001..41494028,+#_47760f89575d92dded6f4b1041cd5bfb | p@chr6:41494001..41494028, + |
| 3.07e-33 | FFCP PHASE2:Mm9::chr12:74842928..74842966,+#_a94d5051d441cda95224ed3263146d03 | p@chr12:74842928..74842966, + |
| 3.07e-33 | FFCP PHASE1:Mm9::chr12:74842928..74842966,+#_a94d5051d441cda95224ed3263146d03 | p@chr12:74842928..74842966, + |
| 3.11e-33 | FFCP PHASE1:Mm9::chr9:44807434..44807445,-#_f700f555f7aab2ad0ef7b35ad6503c48 | p@chr9:44807434..44807445, - |
| 3.11e-33 | FFCP PHASE2:Mm9::chr9:44807434..44807445,-#_f700f555f7aab2ad0ef7b35ad6503c48 | p@chr9:44807434..44807445, - |
| 3.34e-33 | FFCP PHASE1:Mm9::chr6:41484314..41484337,+#_d4349235969f8c8f9e0babe1aa5b19b0 | p1@ENSMUST00000103286, p1@uc009bpg.1, p1@uc009bph.1 |
| 3.34e-33 | FFCP PHASE2:Mm9::chr6:41484314..41484337,+#_d4349235969f8c8f9e0babe1aa5b19b0 | p1@ENSMUST00000103286, p1@uc009bpg.1, p1@uc009bph.1 |
| 3.92e-33 | FFCP PHASE2:Mm9::chr6:41493801..41493826,+#_d342e891598ef97108db1cbb7f7d0c62 | p1@ENSMUST00000103298, p1@uc009bpy.1 |
| 3.92e-33 | FFCP PHASE1:Mm9::chr6:41493801..41493826,+#_d342e891598ef97108db1cbb7f7d0c62 | p1@ENSMUST00000103298, p1@uc009bpy.1 |
| 4.06e-33 | FFCP PHASE1:Mm9::chr2:11093788..11093799,+#_4c37b65701242cad00e994d62ba95f65 | p11@Prkcq |
| 4.06e-33 | FFCP PHASE2:Mm9::chr2:11093788..11093799,+#_4c37b65701242cad00e994d62ba95f65 | p11@Prkcq |
| 5.05e-33 | FFCP PHASE1:Mm9::chr14:54791784..54791787,+#_b7e0277977d563cbc6bb34b46dcf5816 | p@chr14:54791784..54791787, + |
| 5.05e-33 | FFCP PHASE2:Mm9::chr14:54791784..54791787,+#_b7e0277977d563cbc6bb34b46dcf5816 | p@chr14:54791784..54791787, + |
| 5.87e-33 | FFCP PHASE2:Mm9::chr9:44809185..44809215,-#_a492ff4bb095d9a0311f17e690926ad0 | p@chr9:44809185..44809215, - |
| 5.87e-33 | FFCP PHASE1:Mm9::chr9:44809185..44809215,-#_a492ff4bb095d9a0311f17e690926ad0 | p@chr9:44809185..44809215, - |
| 6.97e-33 | FFCP PHASE1:Mm9::chr6:40997465..40997489,+#_c730a3f2e2195943a27f809559216c4d | p1@ENSMUST00000103263 |
| 6.97e-33 | FFCP PHASE2:Mm9::chr6:40997465..40997489,+#_c730a3f2e2195943a27f809559216c4d | p1@ENSMUST00000103263 |
| 7.58e-33 | FFCP PHASE1:Mm9::chr9:44793518..44793537,+#_9f9e1d514384a4a68e02b97b34683df0 | p@chr9:44793518..44793537, + |
| 7.58e-33 | FFCP PHASE2:Mm9::chr9:44793518..44793537,+#_9f9e1d514384a4a68e02b97b34683df0 | p@chr9:44793518..44793537, + |
| 8.76e-33 | FFCP PHASE2:Mm9::chr6:41071548..41071565,+#_a1c440179f86099668cfce882ac3a889 | p@chr6:41071548..41071565, + |
| 8.76e-33 | FFCP PHASE1:Mm9::chr6:41071548..41071565,+#_a1c440179f86099668cfce882ac3a889 | p@chr6:41071548..41071565, + |
| 9.65e-33 | FFCP PHASE1:Hg19::chr11:3147806..3147811,-#_ca784f551253420253778b25137c2fed | p7@OSBPL5 |
| 9.65e-33 | FFCP PHASE2:Hg19::chr11:3147806..3147811,-#_ca784f551253420253778b25137c2fed | p7@OSBPL5 |
| 1.01e-32 | FFCP PHASE1:Mm9::chr6:41483853..41483880,+#_ab52b3acb896c491463bb8a5e099c789 | p1@ENSMUST00000103284, p1@uc009bpb.1, p1@uc009bpc.1, p1@uc009bpd.1, p1@uc009bpe.1 |
| 1.01e-32 | FFCP PHASE2:Mm9::chr6:41483853..41483880,+#_ab52b3acb896c491463bb8a5e099c789 | p1@ENSMUST00000103284, p1@uc009bpb.1, p1@uc009bpc.1, p1@uc009bpd.1, p1@uc009bpe.1 |
| 1.09e-32 | FFCP PHASE1:Hg19::chr2:233246793..233246841,-#_7c359682cf90df270a1a0beb4abbc271 | p1@ENST00000441266 |
| 1.09e-32 | FFCP PHASE1:Hg19::chr17:79098633..79098647,-#_7c359682cf90df270a1a0beb4abbc271 | p@chr17:79098633..79098647, - |
| 1.09e-32 | FFCP PHASE1:Hg19::chr2:233246932..233246943,+#_7c359682cf90df270a1a0beb4abbc271 | p6@ALPP |
| 1.09e-32 | FFCP PHASE2:Hg19::chr2:53732986..53732989,-#_7c359682cf90df270a1a0beb4abbc271 | p@chr2:53732986..53732989, - |
| 1.09e-32 | FFCP PHASE2:Hg19::chr8:128241234..128241241,-#_7c359682cf90df270a1a0beb4abbc271 | p7@uc003ysb.2 |
| 1.09e-32 | FFCP PHASE2:Hg19::chr2:233244912..233244922,+#_7c359682cf90df270a1a0beb4abbc271 | p2@AK297894 |
| 1.09e-32 | FFCP PHASE2:Hg19::chr17:79098633..79098647,-#_7c359682cf90df270a1a0beb4abbc271 | p@chr17:79098633..79098647, - |
| 1.09e-32 | FFCP PHASE2:Hg19::chr2:233244473..233244503,+#_7c359682cf90df270a1a0beb4abbc271 | p1@AK297894 |
| 1.09e-32 | FFCP PHASE1:Hg19::chr2:233244912..233244922,+#_7c359682cf90df270a1a0beb4abbc271 | p2@AK297894 |
| 1.09e-32 | FFCP PHASE2:Hg19::chr2:233246793..233246841,-#_7c359682cf90df270a1a0beb4abbc271 | p1@ENST00000441266 |
| 1.09e-32 | FFCP PHASE2:Hg19::chr16:87869864..87869878,+#_7c359682cf90df270a1a0beb4abbc271 | p@chr16:87869864..87869878, + |
| 1.09e-32 | FFCP PHASE1:Hg19::chr16:87869864..87869878,+#_7c359682cf90df270a1a0beb4abbc271 | p@chr16:87869864..87869878, + |
| 1.09e-32 | FFCP PHASE1:Hg19::chr8:128241234..128241241,-#_7c359682cf90df270a1a0beb4abbc271 | p7@uc003ysb.2 |
| 1.09e-32 | FFCP PHASE2:Hg19::chr2:233246459..233246472,+#_7c359682cf90df270a1a0beb4abbc271 | p9@ALPP |
| 1.09e-32 | FFCP PHASE2:Hg19::chr2:233246932..233246943,+#_7c359682cf90df270a1a0beb4abbc271 | p6@ALPP |
| 1.09e-32 | FFCP PHASE1:Hg19::chr2:53732986..53732989,-#_7c359682cf90df270a1a0beb4abbc271 | p@chr2:53732986..53732989, - |
| 1.09e-32 | FFCP PHASE1:Hg19::chr2:233246459..233246472,+#_7c359682cf90df270a1a0beb4abbc271 | p9@ALPP |
| 1.09e-32 | FFCP PHASE1:Hg19::chr2:233244473..233244503,+#_7c359682cf90df270a1a0beb4abbc271 | p1@AK297894 |
| 1.36e-32 | FFCP PHASE2:Hg19::chr8:128270900..128270912,-#_d04a5900af3661ac046ae6c1fbe3c361 | p@chr8:128270900..128270912, - |
| 1.36e-32 | FFCP PHASE1:Hg19::chr8:128270900..128270912,-#_d04a5900af3661ac046ae6c1fbe3c361 | p@chr8:128270900..128270912, - |
| 1.51e-32 | FFCP PHASE2:Mm9::chr10:28388454..28388458,+#_65f99dbe8dcedd1c2defe64cae850b43 | p5@Themis |
| 1.51e-32 | FFCP PHASE1:Mm9::chr10:28388454..28388458,+#_65f99dbe8dcedd1c2defe64cae850b43 | p5@Themis |
| 1.65e-32 | FFCP PHASE2:Mm9::chr6:41482920..41482933,+#_d58fc58bad9f9060ca4d11adc4d5efdc | p5@uc009bpa.1 |
| 1.65e-32 | FFCP PHASE1:Mm9::chr6:41482920..41482933,+#_d58fc58bad9f9060ca4d11adc4d5efdc | p5@uc009bpa.1 |
| 2.0e-32 | FFCP PHASE2:Mm9::chr6:40997323..40997349,+#_4066de38207d39394e6cd52d44126a9c | p2@uc009bnp.1, p2@uc012eki.1 |
| 2.0e-32 | FFCP PHASE1:Mm9::chr6:40997323..40997349,+#_4066de38207d39394e6cd52d44126a9c | p2@uc009bnp.1, p2@uc012eki.1 |
| 1.12e-31 | FFCP PHASE1:Mm9::chr6:124838183..124838199,-#_0663b857720e253bfd644745c5f83b40 | p2@Cd4 |
| 1.12e-31 | FFCP PHASE2:Mm9::chr6:124838183..124838199,-#_0663b857720e253bfd644745c5f83b40 | p2@Cd4 |
| 2.1e-31 | FFCP PHASE2:Mm9::chr14:61328148..61328173,+#_34324825cc63956ae8cea5b1988c804d | p@chr14:61328148..61328173, + |
| 2.1e-31 | FFCP PHASE1:Mm9::chr14:61328148..61328173,+#_34324825cc63956ae8cea5b1988c804d | p@chr14:61328148..61328173, + |
| 2.46e-31 | FFCP PHASE1:Hg19::chr3:161318448..161318456,+#_140ba304ca67f2179728d82a8e770435 | p@chr3:161318448..161318456, + |
| 2.46e-31 | FFCP PHASE2:Hg19::chr3:161318448..161318456,+#_140ba304ca67f2179728d82a8e770435 | p@chr3:161318448..161318456, + |
| 2.74e-31 | FFCP PHASE2:Mm9::chr6:41128981..41128995,+#_b0914268992de8baf057edaefe4ebf26 | p1@uc012ekr.1 |
| 2.74e-31 | FFCP PHASE1:Mm9::chr6:41128981..41128995,+#_b0914268992de8baf057edaefe4ebf26 | p1@uc012ekr.1 |
| 3.12e-31 | FFCP PHASE1:Mm9::chr6:40841675..40841691,+#_fb2d885d1bfd4a2947eff73b23416cf6 | p2@1810009J06Rik |
| 3.12e-31 | FFCP PHASE2:Mm9::chr6:40841675..40841691,+#_fb2d885d1bfd4a2947eff73b23416cf6 | p2@1810009J06Rik |
| 3.72e-31 | FFCP PHASE2:Mm9::chr11:52067405..52067434,-#_28f3d7a669795e587c52f87d6948fb56 | p@chr11:52067405..52067434, - |
| 3.72e-31 | FFCP PHASE1:Mm9::chr11:52067405..52067434,-#_28f3d7a669795e587c52f87d6948fb56 | p@chr11:52067405..52067434, - |
| 3.88e-31 | FFCP PHASE2:Mm9::chr6:41066036..41066054,+#_eb0841da24757e331389733191f2f04b | p1@uc012ekk.1 |
| 3.88e-31 | FFCP PHASE1:Mm9::chr6:41066036..41066054,+#_eb0841da24757e331389733191f2f04b | p1@uc012ekk.1 |
| 4.24e-31 | FFCP PHASE2:Mm9::chr6:41491943..41491953,+#_eac5aabcaae768eeefdfa6d034443435 | p3@uc009bpo.1, p3@uc009bpp.1 |
| 4.24e-31 | FFCP PHASE1:Mm9::chr6:41491943..41491953,+#_eac5aabcaae768eeefdfa6d034443435 | p3@uc009bpo.1, p3@uc009bpp.1 |
| 4.24e-31 | FFCP PHASE1:Mm9::chr6:41009432..41009454,+#_eac5aabcaae768eeefdfa6d034443435 | p1@ENSMUST00000103265 |
| 4.24e-31 | FFCP PHASE2:Mm9::chr6:41009432..41009454,+#_eac5aabcaae768eeefdfa6d034443435 | p1@ENSMUST00000103265 |
| 4.43e-31 | FFCP PHASE1:Mm9::chr7:133512043..133512060,-#_6312009f85f5c5b47698d786c68254e9 | p@chr7:133512043..133512060, - |
| 4.43e-31 | FFCP PHASE2:Mm9::chr7:133512043..133512060,-#_6312009f85f5c5b47698d786c68254e9 | p@chr7:133512043..133512060, - |
| 4.75e-31 | FFCP PHASE1:Mm9::chr6:41483016..41483036,+#_4fe593f1f36b4459e8ed018dba9f316b | p2@uc009bpa.1 |
| 4.75e-31 | FFCP PHASE2:Mm9::chr6:41483016..41483036,+#_4fe593f1f36b4459e8ed018dba9f316b | p2@uc009bpa.1 |
