UBERON:0000965

Name:	lens of camera-type eye
Namespace:	FANTOM
Definition:	"Transparent part of camera-type eye that helps to refract light to be focused on the retina." [Wikipedia:Lens_(anatomy)]
Xrefs:	Expandlinks: AAO:0010348 BTO:0000723 EHDAA:9057 EMAPA:17838 EV:0100343 FMA:58241 MA:0000275 MAT:0000141 MESH:A.09.371.509 MIAA:0000141 ncithesaurus:Crystalline_Lens OpenCyc:Mx4rvVj0fZwpEbGdrcN5Y29ycA RETIRED_EHDAA2:0000975 SCTID:181169005 TAO:0000035 VHOG:0000169 XAO:0000008 ZFA:0000035
Synonyms:	"camera-type eye lens" EXACT [GO:0002088] "crystalline lens" RELATED [BTO:0000723] "eye lens" EXACT SENSU [] "lens" EXACT SENSU [] "lens crystallina" EXACT [Wikipedia:Lens_%28anatomy%29] "ocular lens" RELATED [BTO:0000723]
Comments:	Taxon notes: This class excludes compound eye corneal lenses.
Alt_id:	UBERON:FBbt_00004199-FMA_58241-MA_0000275-MIAA_0000141-XAO_0000008-ZFA_0000035
Subset:	uberon_slim vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

---

Parents

is_a:	UBERON:0004121(ectoderm-derived structure),UBERON:0005389(transparent eye structure)
develops_from:	UBERON:0003073(lens placode),UBERON:0005426(lens vesicle)
part_of:	UBERON:0001801(anterior segment of eyeball)

Children

part of:	UBERON:0001803 (epithelium of lens),CL:0002222 (vertebrate lens cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

---

Human (Homo sapiens)

• 10647-109A8 (lens epithelial cell line:SRA 01/04)
• 11529-119I8 (Lens Epithelial Cells, donor1)
• 11609-120I7 (Lens Epithelial Cells, donor2)
• 11690-122I7 (Lens Epithelial Cells, donor3)

Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000965 (lens of camera-type eye), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

---

Copy Excel CSV PDF

Search:

P-value	FFCP	Short description

P-value	FFCP	Short description
1.41e-88	FFCP PHASE2:Hg19::chr22:25595823..25595826,+	p1@CRYBB3
1.41e-88	FFCP PHASE1:Hg19::chr22:25595823..25595826,+	p1@CRYBB3
3.32e-74	FFCP PHASE1:Hg19::chr22:25615600..25615611,+	p1@CRYBB2
3.32e-74	FFCP PHASE2:Hg19::chr22:25615600..25615611,+	p1@CRYBB2
5.48e-74	FFCP PHASE1:Hg19::chr19:51891222..51891233,-	p1@LIM2
5.48e-74	FFCP PHASE2:Hg19::chr19:51891222..51891233,-	p1@LIM2
3.8e-56	FFCP PHASE2:Hg19::chr22:27017921..27017928,+	p1@CRYBA4
3.8e-56	FFCP PHASE1:Hg19::chr22:27017921..27017928,+	p1@CRYBA4
3.1e-50	FFCP PHASE2:Hg19::chr20:61204240..61204241,+	p@chr20:61204240..61204241, +
3.1e-50	FFCP PHASE1:Hg19::chr20:61204240..61204241,+	p@chr20:61204240..61204241, +
3.1e-50	FFCP PHASE1:Hg19::chr13:104778247..104778293,+	p@chr13:104778247..104778293, +
3.1e-50	FFCP PHASE2:Hg19::chr13:104778247..104778293,+	p@chr13:104778247..104778293, +
5.14e-50	FFCP PHASE2:Hg19::chr14:37642016..37642022,-	p7@SLC25A21
5.14e-50	FFCP PHASE2:Hg19::chr21:44592820..44592840,-	p2@CU686889
5.14e-50	FFCP PHASE1:Hg19::chr14:37642016..37642022,-	p7@SLC25A21
5.14e-50	FFCP PHASE1:Hg19::chr21:44592820..44592840,-	p2@CU686889
6.6e-50	FFCP PHASE1:Hg19::chr21:44592842..44592867,-	p1@CU686889
6.6e-50	FFCP PHASE1:Hg19::chr21:44589339..44589372,-	p@chr21:44589339..44589372, -
6.6e-50	FFCP PHASE1:Hg19::chr12:132475501..132475504,+	p@chr12:132475501..132475504, +
6.6e-50	FFCP PHASE2:Hg19::chr21:44592842..44592867,-	p1@CU686889
6.6e-50	FFCP PHASE2:Hg19::chr12:132475501..132475504,+	p@chr12:132475501..132475504, +
6.6e-50	FFCP PHASE2:Hg19::chr21:44589339..44589372,-	p@chr21:44589339..44589372, -
6.27e-44	FFCP PHASE1:Hg19::chr11:31827535..31827565,-	p11@PAX6
6.27e-44	FFCP PHASE2:Hg19::chr11:31827535..31827565,-	p11@PAX6
1.92e-41	FFCP PHASE2:Hg19::chr3:186262166..186262170,-	p1@CRYGS
1.92e-41	FFCP PHASE1:Hg19::chr3:186262166..186262170,-	p1@CRYGS
4.94e-40	FFCP PHASE2:Hg19::chr5:112173525..112173532,+	p@chr5:112173525..112173532, +
4.94e-40	FFCP PHASE1:Hg19::chr5:112173525..112173532,+	p@chr5:112173525..112173532, +
1.62e-37	FFCP PHASE2:Hg19::chr1:29586692..29586705,+	p7@PTPRU
1.62e-37	FFCP PHASE1:Hg19::chr1:29586692..29586705,+	p7@PTPRU
2.1e-35	FFCP PHASE2:Hg19::chr14:60975644..60975673,+	p3@SIX6
2.1e-35	FFCP PHASE1:Hg19::chr14:60975644..60975673,+	p3@SIX6
6.73e-35	FFCP PHASE1:Hg19::chr14:60975871..60975880,+	p4@SIX6
6.73e-35	FFCP PHASE2:Hg19::chr14:60975871..60975880,+	p4@SIX6
5.06e-34	FFCP PHASE1:Hg19::chr11:31667372..31667383,-	p@chr11:31667372..31667383, -
5.06e-34	FFCP PHASE2:Hg19::chr11:31667372..31667383,-	p@chr11:31667372..31667383, -
8.36e-34	FFCP PHASE2:Hg19::chr19:1470631..1470648,-	p@chr19:1470631..1470648, -
8.36e-34	FFCP PHASE1:Hg19::chr19:1470631..1470648,-	p@chr19:1470631..1470648, -
5.55e-33	FFCP PHASE1:Hg19::chr21:44589135..44589151,+	p1@CRYAA
5.55e-33	FFCP PHASE2:Hg19::chr21:44589135..44589151,+	p1@CRYAA
9.55e-33	FFCP PHASE1:Hg19::chr17:27573875..27573878,+	p1@CRYBA1
9.55e-33	FFCP PHASE2:Hg19::chr17:27573875..27573878,+	p1@CRYBA1
2.74e-29	FFCP PHASE2:Hg19::chr2:45168589..45168601,-	p2@ENST00000456467
2.74e-29	FFCP PHASE1:Hg19::chr2:45168589..45168601,-	p2@ENST00000456467
3.65e-29	FFCP PHASE2:Hg19::chr7:107883678..107883689,-	p13@NRCAM
3.65e-29	FFCP PHASE1:Hg19::chr7:107883678..107883689,-	p13@NRCAM
7.46e-29	FFCP PHASE1:Hg19::chr13:114202163..114202178,+	p@chr13:114202163..114202178, +
7.46e-29	FFCP PHASE2:Hg19::chr13:114202163..114202178,+	p@chr13:114202163..114202178, +
1.36e-28	FFCP PHASE1:Hg19::chr3:173116225..173116242,+	p10@NLGN1
1.36e-28	FFCP PHASE2:Hg19::chr3:173116225..173116242,+	p10@NLGN1
2.64e-27	FFCP PHASE2:Hg19::chr2:45169233..45169244,+	p10@SIX3
2.64e-27	FFCP PHASE1:Hg19::chr2:45169233..45169244,+	p10@SIX3
8.39e-27	FFCP PHASE1:Hg19::chr14:60975858..60975869,+	p2@SIX6
8.39e-27	FFCP PHASE2:Hg19::chr14:60975858..60975869,+	p2@SIX6
5.56e-26	FFCP PHASE1:Hg19::chrX:43587410..43587413,+	p@chrX:43587410..43587413, +
5.56e-26	FFCP PHASE2:Hg19::chr9:75848662..75848671,-	p@chr9:75848662..75848671, -
5.56e-26	FFCP PHASE1:Hg19::chr1:147374915..147374932,+	p1@GJA8
5.56e-26	FFCP PHASE2:Hg19::chr19:40920692..40920700,-	p@chr19:40920692..40920700, -
5.56e-26	FFCP PHASE1:Hg19::chr20:35861148..35861151,+	p@chr20:35861148..35861151, +
5.56e-26	FFCP PHASE2:Hg19::chr3:150690809..150690822,-	p3@CLRN1
5.56e-26	FFCP PHASE1:Hg19::chr9:75848662..75848671,-	p@chr9:75848662..75848671, -
5.56e-26	FFCP PHASE2:Hg19::chrX:43587410..43587413,+	p@chrX:43587410..43587413, +
5.56e-26	FFCP PHASE1:Hg19::chr19:40920692..40920700,-	p@chr19:40920692..40920700, -
5.56e-26	FFCP PHASE2:Hg19::chr1:147374915..147374932,+	p1@GJA8
5.56e-26	FFCP PHASE1:Hg19::chr3:150690809..150690822,-	p3@CLRN1
5.56e-26	FFCP PHASE2:Hg19::chr20:35861148..35861151,+	p@chr20:35861148..35861151, +
7.14e-26	FFCP PHASE1:Hg19::chr21:36253916..36253918,-	p@chr21:36253916..36253918, -
7.14e-26	FFCP PHASE1:Hg19::chr19:41727698..41727705,+	p@chr19:41727698..41727705, +
7.14e-26	FFCP PHASE2:Hg19::chr1:45769711..45769721,-	p@chr1:45769711..45769721, -
7.14e-26	FFCP PHASE2:Hg19::chr13:72440726..72440736,-	p19@DACH1
7.14e-26	FFCP PHASE2:Hg19::chr21:44592358..44592365,+	p@chr21:44592358..44592365, +
7.14e-26	FFCP PHASE2:Hg19::chr20:33903184..33903189,-	p11@UQCC
7.14e-26	FFCP PHASE2:Hg19::chr10:73406056..73406065,+	p@chr10:73406056..73406065, +
7.14e-26	FFCP PHASE2:Hg19::chr2:45154282..45154288,-	p@chr2:45154282..45154288, -
7.14e-26	FFCP PHASE1:Hg19::chr3:156322310..156322314,-	p@chr3:156322310..156322314, -
7.14e-26	FFCP PHASE1:Hg19::chr12:56848437..56848442,-	p1@MIP
7.14e-26	FFCP PHASE2:Hg19::chr21:44592788..44592807,+	p@chr21:44592788..44592807, +
7.14e-26	FFCP PHASE1:Hg19::chr19:17137781..17137792,-	p6@CPAMD8
7.14e-26	FFCP PHASE1:Hg19::chr9:100057272..100057276,+	p@chr9:100057272..100057276, +
7.14e-26	FFCP PHASE1:Hg19::chr13:44875179..44875188,-	p@chr13:44875179..44875188, -
7.14e-26	FFCP PHASE1:Hg19::chr7:123198284..123198329,-	p3@NDUFA5
7.14e-26	FFCP PHASE1:Hg19::chr21:44592626..44592635,-	p5@CU686889
7.14e-26	FFCP PHASE2:Hg19::chr1:86064794..86064797,+	p1@ENST00000426794
7.14e-26	FFCP PHASE2:Hg19::chr1:115873480..115873484,+	p@chr1:115873480..115873484, +
7.14e-26	FFCP PHASE2:Hg19::chr5:45038620..45038622,+	p@chr5:45038620..45038622, +
7.14e-26	FFCP PHASE2:Hg19::chr5:124468141..124468176,-	p@chr5:124468141..124468176, -
7.14e-26	FFCP PHASE2:Hg19::chr2:693025..693036,+	p@chr2:693025..693036, +
7.14e-26	FFCP PHASE2:Hg19::chr2:10538258..10538282,+	p@chr2:10538258..10538282, +
7.14e-26	FFCP PHASE1:Hg19::chr11:65361417..65361421,-	p2@KCNK7
7.14e-26	FFCP PHASE1:Hg19::chr2:45154282..45154288,-	p@chr2:45154282..45154288, -
7.14e-26	FFCP PHASE1:Hg19::chr21:44592750..44592758,-	p4@CU686889
7.14e-26	FFCP PHASE1:Hg19::chr4:140656282..140656285,-	p@chr4:140656282..140656285, -
7.14e-26	FFCP PHASE1:Hg19::chr1:45769711..45769721,-	p@chr1:45769711..45769721, -
7.14e-26	FFCP PHASE2:Hg19::chr16:85617064..85617073,-	p@chr16:85617064..85617073, -
7.14e-26	FFCP PHASE2:Hg19::chr5:464155..464205,+	p@chr5:464155..464205, +
7.14e-26	FFCP PHASE2:Hg19::chr21:44592512..44592521,+	p@chr21:44592512..44592521, +
7.14e-26	FFCP PHASE1:Hg19::chr20:33903184..33903189,-	p11@UQCC
7.14e-26	FFCP PHASE1:Hg19::chr21:44592358..44592365,+	p@chr21:44592358..44592365, +
7.14e-26	FFCP PHASE1:Hg19::chr1:115873480..115873484,+	p@chr1:115873480..115873484, +
7.14e-26	FFCP PHASE1:Hg19::chr5:124468141..124468176,-	p@chr5:124468141..124468176, -

Showing 1 to 100 of 100 entries