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|located_in=
|located_in=
|name=mesenchyme of upper jaw
|name=mesenchyme of upper jaw
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0001709
|part_of=UBERON:0001709

Latest revision as of 17:39, 12 September 2014

Name:mesenchyme of upper jaw
Namespace:FANTOM
Definition:"A mesenchyme that is part of a upper jaw [Obol]." [OBOL:automatic]
Xrefs:
links:

EHDAA2:0002124
EHDAA:8031
EMAPA:17929

VHOG:0001099
Synonyms: "mesenchyme of palatoquadrate arch" EXACT [OBOL:automatic]
"palatoquadrate arch mesenchyme" EXACT [OBOL:automatic]
"upper jaw mesenchyme" EXACT [OBOL:automatic]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0004119(endoderm-derived structure),UBERON:0004121(ectoderm-derived structure),UBERON:0009891(facial mesenchyme),UBERON:0010314(structure with developmental contribution from neural crest)
develops_from:UBERON:0009526(maxillary process mesenchyme)
part_of:UBERON:0001709(upper jaw region)



Children

is a:UBERON:0005705 (primary palate mesenchyme)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

  • 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003323 (mesenchyme of upper jaw), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data