UBERON:0004732: Difference between revisions
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|located_in= | |located_in= | ||
|name=segmental subdivision of nervous system | |name=segmental subdivision of nervous system | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0001016 | |part_of=UBERON:0001016 |
Latest revision as of 17:47, 12 September 2014
Name: | segmental subdivision of nervous system | |
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Namespace: | FANTOM | |
Definition: | "An organ segment that is part of a nervous system [Obol]." [OBOL:automatic] | |
Xrefs: |
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Synonyms: | "neuromere" RELATED [FBbt:00005140] | |
Comments: | Editor note: revisit this after CARO is revised and/or we have defined metameric segment |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0000063(organ segment) |
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part_of: | UBERON:0001016(nervous system) |
Children
is a: | UBERON:0002464 (nerve trunk),UBERON:0004733 (segmental subdivision of hindbrain) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10033-101E6 (pons, adult, pool1)
- 10038-101F2 (medulla oblongata, adult, pool1)
- 10083-102B2 (cerebellum, adult, pool1)
- 10114-102E6 (cerebellum)
- 10115-102E7 (cerebellum)
- 10116-102E8 (cerebellum)
- 10117-102E9 (cerebellum)
- 10118-102F1 (cerebellum)
- 10119-102F2 (cerebellum)
- 10120-102F3 (cerebellum)
... further results Mouse (Mus musculus)
- 10033-101E6 (pons, adult, pool1)
- 10038-101F2 (medulla oblongata, adult, pool1)
- 10083-102B2 (cerebellum, adult, pool1)
- 10114-102E6 (cerebellum)
- 10115-102E7 (cerebellum)
- 10116-102E8 (cerebellum)
- 10117-102E9 (cerebellum)
- 10118-102F1 (cerebellum)
- 10119-102F2 (cerebellum)
- 10120-102F3 (cerebellum)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004732 (segmental subdivision of nervous system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data