UBERON:0009142: Difference between revisions
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|is_obsolete= | |is_obsolete= | ||
|located_in= | |located_in= | ||
|name=entire mesenchyme | |name=entire embryonic mesenchyme | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0000922 | |part_of=UBERON:0000922 |
Latest revision as of 18:05, 12 September 2014
Name: | entire embryonic mesenchyme | |
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Namespace: | FANTOM | |
Xrefs: |
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Comments: | consider adding new class (EMAPA:16097) for mesenchyme of embryo (some mesenchyme is extraembryonic - e.g. amnion mesoderm) | |
Alt_id: | UBERON:0003313 |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0000477(anatomical cluster),UBERON:0002050(embryonic structure),UBERON:0017650(developing mesenchymal structure) |
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part_of: | UBERON:0000922(embryo) |
Children
part of: | UBERON:0003104 (mesenchyme),UBERON:0005253 (head mesenchyme),UBERON:0005256 (trunk mesenchyme) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
- 11214-116A8 (Mesenchymal stem cells - umbilical, donor0)
- 11539-120A9 (Mesenchymal Stem Cells - umbilical, donor1)
- 11548-120B9 (Mesenchymal Stem Cells - Wharton's Jelly, donor1)
- 11549-120C1 (Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor1)
- 11619-122A8 (Mesenchymal Stem Cells - umbilical, donor2)
- 11628-122B8
- 11629-122B9 (Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor2)
- 11700-123A8 (Mesenchymal Stem Cells - umbilical, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0009142 (entire embryonic mesenchyme), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data