FFCP PHASE1:Mm9::chr4:45811757..45811797,+: Difference between revisions
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{{FFCP|EntrezGene=72535|HGNC=|MCL_coexpression_id=474|UniProt=Q9CZS1,B1AWX7|association_with_transcript=-96bp_to_ENSMUST00000044384,NM_028270,uc008ssx.1_5end|description=CAGE_peak_3_at_Aldh1b1_5end|id=chr4:45811757..45811797,+|ontology_enrichment_celltype=CL:0002563!1.76e-14!9;CL:0002251!1.76e-14!9;CL:0000239!1.36e-09!6;CL:0000677!1.36e-09!6;CL:0000212!1.36e-09!6;CL:0000584!1.36e-09!6;CL:0000075!4.48e-08!7;CL:0002076!8.63e-08!15|ontology_enrichment_celltype_v019_2=CL:0002563,3.17e-20,9;CL:0002251,3.17e-20,9;CL:0002250,4.72e-13,3;CL:0002076,8.44e-12,15;CL:0000066,4.73e-11,25;CL:0000239,6.15e-10,6;CL:0000677,6.15e-10,6;CL:0000584,6.15e-10,6;CL:0000223,1.24e-08,20;CL:0000075,1.55e-08,7|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000160!6.28e-26!43;UBERON:0000344!2.33e-20!15;UBERON:0005409!4.70e-19!59;UBERON:0001242!1.52e-17!13;UBERON:0000060!1.52e-17!13;UBERON:0001262!1.52e-17!13;UBERON:0004786!1.52e-17!13;UBERON:0003350!1.76e-14!9;UBERON:0004808!1.76e-14!9;UBERON:0001277!1.76e-14!9;UBERON:0000485!1.98e-11!11;UBERON:0004923!3.72e-11!24;UBERON:0001007!6.84e-08!128;UBERON:0001555!6.84e-08!128;UBERON:0007026!6.84e-08!128;UBERON:0004119!1.27e-07!130;UBERON:0000925!1.27e-07!130;UBERON:0006595!1.27e-07!130;UBERON:0004921!9.65e-07!126;UBERON:0004185!9.65e-07!126|ontology_enrichment_uberon_v019_2=UBERON:0000160,7.75e-41,31;UBERON:0000344,8.29e-35,15;UBERON:0001242,1.89e-28,13;UBERON:0001262,1.89e-28,13;UBERON:0004786,1.89e-28,13;UBERON:0005409,8.21e-26,47;UBERON:0004923,5.89e-21,24;UBERON:0003350,3.17e-20,9;UBERON:0004808,3.17e-20,9;UBERON:0001277,3.17e-20,9;UBERON:0000485,2.13e-16,11;UBERON:0002108,2.79e-16,4;UBERON:0000331,9.65e-13,3;UBERON:0002116,9.65e-13,3;UBERON:0001204,9.65e-13,3;UBERON:0001168,9.65e-13,3;UBERON:0001007,4.54e-12,116;UBERON:0001555,4.54e-12,116;UBERON:0007026,4.54e-12,116;UBERON:0004119,8.43e-12,118;UBERON:0000925,8.43e-12,118;UBERON:0006595,8.43e-12,118;UBERON:0004921,8.92e-10,114;UBERON:0001962,4.92e-08,2;UBERON:0001961,4.92e-08,2;UBERON:0001744,4.92e-08,2|phase1_expression=0,1.04692622291808,0.454999239389536,0.90739263392049,1.00179145989269,4.70061961353291,2.56973904655078,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,1.11994695955385,1.60586496747019,0,2.58457197695445,2.15471232685889,5.32065574477847,9.07308467135751,3.76941868114018,0,0,0,7.79899373328441,14.9611180822643,12.0459920194798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202316460859598,0,0,0,0,0,0,0,0,0,0,0,0,0,0.220868540951614,0,0,0,0,0,0,0,0.0914876436024097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.45673551887624,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.57639877292028,0,0,0,0,0,0.251308704225729,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.180062061461015,0,0,0.154267112887378,0,0.268273401399619,0.116765342367169,0,0,0,0,0,0,0,0,0,1.32225283331772,0,0,0.515469845288373,0.605050573870028,1.77902435075896,1.14135375667535,0.474529061544512,1.31759163779209,1.00534083520108,0.596869416123452,0.974820435595601,0.898819408654221,2.37751854862164,2.19055400579804,0,0,0,0,0,0.0701358198903186,0,0,0,0,0,0,0,0,0,0,0,0,0.162135226775035,0,0,0,0.624075346229121,0,0.358794827043824,1.4473305640901,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.302323556964751,0.377210159511796,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.20628920292836,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0,0.218362563746178,0,0,0,0,0,0,0,0.165458490457098,0,0,0,0.234714477291508,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.187682475451182,0,0,0,0.564751842617067,0,0,0,0,0,0,0,0,0.51776031175182,0,0,0,0,0,0,0,0,0,0,0,0,0.280924522409647,0.0640251524048693,0.17230640686684,0.476293691283074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118635018124174,0.0985044823755635,0,0,0,0.499621155875892,0,0,0,0,0|short_description=p3@Aldh1b1}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:72535 | |||
|HGNC= | |||
|MCL_coexpression_id=474 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q9CZS1,uniprot:B1AWX7 | |||
|association_with_transcript=-96bp_to_ENSMUST00000044384,NM_028270,uc008ssx.1_5end | |||
|cluster_id=chr4:45811757..45811797,+ | |||
|description=CAGE_peak_3_at_Aldh1b1_5end | |||
|id=chr4:45811757..45811797,+ | |||
|ontology_enrichment_celltype=CL:0002563!1.76e-14!9;CL:0002251!1.76e-14!9;CL:0000239!1.36e-09!6;CL:0000677!1.36e-09!6;CL:0000212!1.36e-09!6;CL:0000584!1.36e-09!6;CL:0000075!4.48e-08!7;CL:0002076!8.63e-08!15 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,3.17e-20,9;CL:0002251,3.17e-20,9;CL:0002250,4.72e-13,3;CL:0002076,8.44e-12,15;CL:0000066,4.73e-11,25;CL:0000239,6.15e-10,6;CL:0000677,6.15e-10,6;CL:0000584,6.15e-10,6;CL:0000223,1.24e-08,20;CL:0000075,1.55e-08,7 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!6.28e-26!43;UBERON:0000344!2.33e-20!15;UBERON:0005409!4.70e-19!59;UBERON:0001242!1.52e-17!13;UBERON:0000060!1.52e-17!13;UBERON:0001262!1.52e-17!13;UBERON:0004786!1.52e-17!13;UBERON:0003350!1.76e-14!9;UBERON:0004808!1.76e-14!9;UBERON:0001277!1.76e-14!9;UBERON:0000485!1.98e-11!11;UBERON:0004923!3.72e-11!24;UBERON:0001007!6.84e-08!128;UBERON:0001555!6.84e-08!128;UBERON:0007026!6.84e-08!128;UBERON:0004119!1.27e-07!130;UBERON:0000925!1.27e-07!130;UBERON:0006595!1.27e-07!130;UBERON:0004921!9.65e-07!126;UBERON:0004185!9.65e-07!126 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,7.75e-41,31;UBERON:0000344,8.29e-35,15;UBERON:0001242,1.89e-28,13;UBERON:0001262,1.89e-28,13;UBERON:0004786,1.89e-28,13;UBERON:0005409,8.21e-26,47;UBERON:0004923,5.89e-21,24;UBERON:0003350,3.17e-20,9;UBERON:0004808,3.17e-20,9;UBERON:0001277,3.17e-20,9;UBERON:0000485,2.13e-16,11;UBERON:0002108,2.79e-16,4;UBERON:0000331,9.65e-13,3;UBERON:0002116,9.65e-13,3;UBERON:0001204,9.65e-13,3;UBERON:0001168,9.65e-13,3;UBERON:0001007,4.54e-12,116;UBERON:0001555,4.54e-12,116;UBERON:0007026,4.54e-12,116;UBERON:0004119,8.43e-12,118;UBERON:0000925,8.43e-12,118;UBERON:0006595,8.43e-12,118;UBERON:0004921,8.92e-10,114;UBERON:0001962,4.92e-08,2;UBERON:0001961,4.92e-08,2;UBERON:0001744,4.92e-08,2 | |||
|phase1_expression=0,1.04692622291808,0.454999239389536,0.90739263392049,1.00179145989269,4.70061961353291,2.56973904655078,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,1.11994695955385,1.60586496747019,0,2.58457197695445,2.15471232685889,5.32065574477847,9.07308467135751,3.76941868114018,0,0,0,7.79899373328441,14.9611180822643,12.0459920194798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202316460859598,0,0,0,0,0,0,0,0,0,0,0,0,0,0.220868540951614,0,0,0,0,0,0,0,0.0914876436024097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.45673551887624,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.57639877292028,0,0,0,0,0,0.251308704225729,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.180062061461015,0,0,0.154267112887378,0,0.268273401399619,0.116765342367169,0,0,0,0,0,0,0,0,0,1.32225283331772,0,0,0.515469845288373,0.605050573870028,1.77902435075896,1.14135375667535,0.474529061544512,1.31759163779209,1.00534083520108,0.596869416123452,0.974820435595601,0.898819408654221,2.37751854862164,2.19055400579804,0,0,0,0,0,0.0701358198903186,0,0,0,0,0,0,0,0,0,0,0,0,0.162135226775035,0,0,0,0.624075346229121,0,0.358794827043824,1.4473305640901,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.302323556964751,0.377210159511796,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.20628920292836,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0,0.218362563746178,0,0,0,0,0,0,0,0.165458490457098,0,0,0,0.234714477291508,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.187682475451182,0,0,0,0.564751842617067,0,0,0,0,0,0,0,0,0.51776031175182,0,0,0,0,0,0,0,0,0,0,0,0,0.280924522409647,0.0640251524048693,0.17230640686684,0.476293691283074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118635018124174,0.0985044823755635,0,0,0,0.499621155875892,0,0,0,0,0 | |||
|short_description=p3@Aldh1b1 | |||
}} |
Revision as of 12:42, 5 August 2015
Short description: | p3@Aldh1b1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Aldh1b1_5end |
Coexpression cluster: | MCL_coexpression_mm9:474 |
Association with transcript: | -96bp_to_ENSMUST00000044384, NM_028270, uc008ssx.1_5end |
EntrezGene: | 72535 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 3.17e-20 | 9 |
epithelial cell of alimentary canal | 3.17e-20 | 9 |
intestinal crypt stem cell | 4.72e-13 | 3 |
endo-epithelial cell | 8.44e-12 | 15 |
epithelial cell | 4.73e-11 | 25 |
brush border epithelial cell | 6.15e-10 | 6 |
gut absorptive cell | 6.15e-10 | 6 |
enterocyte | 6.15e-10 | 6 |
endodermal cell | 1.24e-08 | 20 |
columnar/cuboidal epithelial cell | 1.55e-08 | 7 |
Ontology term | p-value | n |
---|---|---|
intestine | 7.75e-41 | 31 |
mucosa | 8.29e-35 | 15 |
intestinal mucosa | 1.89e-28 | 13 |
wall of intestine | 1.89e-28 | 13 |
gastrointestinal system mucosa | 1.89e-28 | 13 |
gastrointestinal system | 8.21e-26 | 47 |
organ component layer | 5.89e-21 | 24 |
epithelium of mucosa | 3.17e-20 | 9 |
gastrointestinal system epithelium | 3.17e-20 | 9 |
intestinal epithelium | 3.17e-20 | 9 |
simple columnar epithelium | 2.13e-16 | 11 |
small intestine | 2.79e-16 | 4 |
ileal mucosa | 9.65e-13 | 3 |
ileum | 9.65e-13 | 3 |
mucosa of small intestine | 9.65e-13 | 3 |
wall of small intestine | 9.65e-13 | 3 |
digestive system | 4.54e-12 | 116 |
digestive tract | 4.54e-12 | 116 |
primitive gut | 4.54e-12 | 116 |
endoderm-derived structure | 8.43e-12 | 118 |
endoderm | 8.43e-12 | 118 |
presumptive endoderm | 8.43e-12 | 118 |
subdivision of digestive tract | 8.92e-10 | 114 |
gut-associated lymphoid tissue | 4.92e-08 | 2 |
mucosa-associated lymphoid tissue | 4.92e-08 | 2 |
lymphoid tissue | 4.92e-08 | 2 |