FFCP PHASE2:Hg19::chr12:8765428..8765439,-: Difference between revisions
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(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:57379 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:13203 |TSScla...") |
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|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=57379 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=13203 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=Q546Y9,Q7Z599,Q9GZX7 | ||
|association_with_transcript=2bp_to_NM_020661,uc001qur.2_5end | |association_with_transcript=2bp_to_NM_020661,uc001qur.2_5end | ||
|cluster_id=chr12:8765428..8765439,- | |cluster_id=chr12:8765428..8765439,- | ||
Latest revision as of 04:59, 25 September 2015
| Short description: | p3@AICDA |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_3_at_AICDA_5end |
| Coexpression cluster: | C62_Burkitt_tonsil_CD19_submaxillary_spleen_salivary_lymph |
| Association with transcript: | 2bp_to_NM_020661, uc001qur.2_5end |
| EntrezGene: | AICDA |
| HGNC: | 13203 |
| UniProt: | Q546Y9Q7Z599Q9GZX7 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p3@AICDA |
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| lymphocyte of B lineage | 1.12e-34 | 24 |
| pro-B cell | 1.12e-34 | 24 |
| B-1 B cell | 3.61e-34 | 1 |
| mature B cell | 7.67e-18 | 2 |
| pre-B-II cell | 7.67e-18 | 2 |
| transitional stage B cell | 7.67e-18 | 2 |
| small pre-B-II cell | 7.67e-18 | 2 |
| immature B cell | 7.67e-18 | 2 |
| lymphoid lineage restricted progenitor cell | 2.44e-16 | 52 |
| lymphocyte | 4.85e-16 | 53 |
Showing 1 to 10 of 14 entries
| Ontology term | p-value | n |
|---|---|---|
| spleen | 2.89e-12 | 3 |
| gastrointestinal system mesentery | 2.89e-12 | 3 |
| stomach region | 2.89e-12 | 3 |
| mesentery | 2.89e-12 | 3 |
| gastrointestinal system serosa | 2.89e-12 | 3 |
| mesentery of stomach | 2.89e-12 | 3 |
| gut mesentery | 2.89e-12 | 3 |
| dorsal mesentery | 2.89e-12 | 3 |
| dorsal mesogastrium | 2.89e-12 | 3 |
| peritoneal cavity | 2.89e-12 | 3 |
Showing 1 to 10 of 11 entries
| Ontology term | p-value | n |
|---|---|---|
| lymphoma | 4.61e-53 | 10 |
| lymphatic system cancer | 3.61e-34 | 1 |
| lymphosarcoma | 3.61e-34 | 1 |
| genetic disease | 5.05e-34 | 1 |
| monogenic disease | 5.05e-34 | 1 |
| xeroderma pigmentosum | 5.05e-34 | 1 |
| hematologic cancer | 5.74e-11 | 51 |
| immune system cancer | 5.74e-11 | 51 |
Showing 1 to 8 of 8 entries
