Personal tools

UBERON:0006598

From FANTOM5_SSTAR

Revision as of 13:42, 27 June 2012 by Autoedit (talk | contribs)
Jump to: navigation, search

Name:presumptive structure
Xrefs:
links:

AAO:0000479
TAO:0001116

ZFA:0001116
Synonyms: "presumptive structures" EXACT [ZFA:0001116]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005423(developing anatomical structure)
part_of:UBERON:0000922(embryo)



Children

is a:UBERON:0003869 (presumptive ganglion),UBERON:0005424 (presumptive retinal pigmented epithelium),UBERON:0005425 (presumptive neural retina),UBERON:0006240 (future forebrain),UBERON:0006595 (presumptive endoderm),UBERON:0006596 (presumptive blood),UBERON:0006601 (presumptive ectoderm),UBERON:0006603 (presumptive mesoderm),UBERON:0007277 (presumptive hindbrain),UBERON:0007280 (presumptive endocardium),UBERON:0007282 (presumptive segmental plate),UBERON:0007284 (presumptive neural plate),UBERON:0007285 (presumptive paraxial mesoderm),UBERON:0007297 (presumptive pronephric mesoderm),UBERON:0009616 (presumptive midbrain),UBERON:0016880 (future nervous system)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006598 (presumptive structure), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
7.5e-31FFCP PHASE1:Hg19::chr20:23618584..23618603,-#_f17f83d9eca254d44a63157d888153f5p1@CST3
7.5e-31FFCP PHASE2:Hg19::chr20:23618584..23618603,-#_f17f83d9eca254d44a63157d888153f5p1@CST3
6.91e-29FFCP PHASE1:Hg19::chr13:77460532..77460548,-#_195842d7d8eb05225a7c3d3cace0d1e1p1@KCTD12
6.91e-29FFCP PHASE2:Hg19::chr13:77460532..77460548,-#_195842d7d8eb05225a7c3d3cace0d1e1p1@KCTD12
1.31e-28FFCP PHASE1:Hg19::chr13:45010939..45011033,-#_2606b14352643fd507ad806004e245d2p1@TSC22D1
1.31e-28FFCP PHASE2:Hg19::chr13:45010939..45011033,-#_2606b14352643fd507ad806004e245d2p1@TSC22D1
6.82e-28FFCP PHASE1:Hg19::chr2:230135937..230136016,-#_f154b2a93d5ba1df70866dff76d638d5p1@PID1
6.82e-28FFCP PHASE2:Hg19::chr2:230135937..230136016,-#_f154b2a93d5ba1df70866dff76d638d5p1@PID1
1.74e-26FFCP PHASE1:Hg19::chr7:111846435..111846471,-#_04ab0d85992818babf5a58c0fce6d307p1@DOCK4
1.74e-26FFCP PHASE2:Hg19::chr7:111846435..111846471,-#_04ab0d85992818babf5a58c0fce6d307p1@DOCK4
4.12e-26FFCP PHASE2:Hg19::chr11:1330834..1330875,-#_a87e8f2e24d3b66e12a165b0fc2be3ebp1@TOLLIP
4.12e-26FFCP PHASE1:Hg19::chr11:1330834..1330875,-#_a87e8f2e24d3b66e12a165b0fc2be3ebp1@TOLLIP
6.68e-25FFCP PHASE1:Hg19::chr12:112204714..112204781,+#_d8d0272b19db3f90599335363975a0eap1@ALDH2
6.68e-25FFCP PHASE2:Hg19::chr12:112204714..112204781,+#_d8d0272b19db3f90599335363975a0eap1@ALDH2
6.83e-25FFCP PHASE2:Hg19::chr13:77460594..77460613,-#_940686b6176540ddce46f682e7a0cea3p3@KCTD12
6.83e-25FFCP PHASE1:Hg19::chr13:77460594..77460613,-#_940686b6176540ddce46f682e7a0cea3p3@KCTD12
1.27e-24FFCP PHASE2:Hg19::chr4:85887789..85887862,-#_e042950c8fe16b5ffbc0c9498befdff7p1@WDFY3
1.27e-24FFCP PHASE1:Hg19::chr4:85887789..85887862,-#_e042950c8fe16b5ffbc0c9498befdff7p1@WDFY3
6.07e-24FFCP PHASE2:Hg19::chr16:4852616..4852679,-#_9fc6b6ecafef28bb84fe6d929ceaa152p1@ROGDI
6.07e-24FFCP PHASE1:Hg19::chr16:4852616..4852679,-#_9fc6b6ecafef28bb84fe6d929ceaa152p1@ROGDI
1.62e-23FFCP PHASE1:Hg19::chr1:183774240..183774270,+#_204aa6eef99a5ed8c70f78fbac76e590p1@RGL1
1.62e-23FFCP PHASE2:Hg19::chr1:183774240..183774270,+#_204aa6eef99a5ed8c70f78fbac76e590p1@RGL1
2.33e-23FFCP PHASE1:Hg19::chr8:30670289..30670354,-#_c83ac8fe2d2c60d457e17241b4c35ea6p1@PPP2CB
2.33e-23FFCP PHASE2:Hg19::chr8:30670289..30670354,-#_c83ac8fe2d2c60d457e17241b4c35ea6p1@PPP2CB
2.57e-23FFCP PHASE1:Hg19::chr13:77460635..77460654,-#_87927bc0de1b52271118fb2840d5d622p2@KCTD12
2.57e-23FFCP PHASE2:Hg19::chr13:77460635..77460654,-#_87927bc0de1b52271118fb2840d5d622p2@KCTD12
4.06e-23FFCP PHASE1:Hg19::chr4:159094160..159094185,-#_05808f67e423dbe21aa543f09091dd79p2@FAM198B
4.06e-23FFCP PHASE2:Hg19::chr4:159094160..159094185,-#_05808f67e423dbe21aa543f09091dd79p2@FAM198B
6.15e-23FFCP PHASE1:Hg19::chr15:90456156..90456198,-#_cfa0b63af092ef4eea499d85b9aead10p1@C15orf38
6.15e-23FFCP PHASE2:Hg19::chr15:90456156..90456198,-#_cfa0b63af092ef4eea499d85b9aead10p1@C15orf38
7.82e-23FFCP PHASE2:Hg19::chr19:40871734..40871809,+#_5fa6fafa7e1038bdb05646256887ab1ap1@PLD3
7.82e-23FFCP PHASE1:Hg19::chr19:40871734..40871809,+#_5fa6fafa7e1038bdb05646256887ab1ap1@PLD3
1.53e-22FFCP PHASE2:Hg19::chr16:2563989..2564006,+#_db023bc70c02be026201c6bcaf75d554p2@ATP6V0C
1.53e-22FFCP PHASE1:Hg19::chr16:2563989..2564006,+#_db023bc70c02be026201c6bcaf75d554p2@ATP6V0C
2.37e-22FFCP PHASE1:Hg19::chr20:35974484..35974529,+#_27b639f10ff9a7227308bd01087660d6p2@SRC
2.37e-22FFCP PHASE2:Hg19::chr20:35974484..35974529,+#_27b639f10ff9a7227308bd01087660d6p2@SRC
5.65e-22FFCP PHASE2:Hg19::chr11:65082349..65082378,+#_013d3edd1b67e08429866e37b3d7c8aep1@CDC42EP2
5.65e-22FFCP PHASE1:Hg19::chr11:65082349..65082378,+#_013d3edd1b67e08429866e37b3d7c8aep1@CDC42EP2
5.66e-22FFCP PHASE2:Hg19::chr17:1466030..1466129,-#_f5e7ac99a13011579f029597093dfa7cp1@PITPNA
5.66e-22FFCP PHASE1:Hg19::chr17:1466030..1466129,-#_f5e7ac99a13011579f029597093dfa7cp1@PITPNA
5.93e-22FFCP PHASE1:Hg19::chr19:6720653..6720670,-#_dcfb43c0b92c13c55cee12f50f329d52p1@C3
5.93e-22FFCP PHASE2:Hg19::chr19:6720653..6720670,-#_dcfb43c0b92c13c55cee12f50f329d52p1@C3
6.18e-22FFCP PHASE2:Hg19::chr7:2671611..2671658,+#_41162346763ae57424cfeb334646ebdap2@TTYH3
6.18e-22FFCP PHASE1:Hg19::chr7:2671611..2671658,+#_41162346763ae57424cfeb334646ebdap2@TTYH3
1.1e-21FFCP PHASE1:Hg19::chr2:127864839..127864888,-#_ac7d17c741d0421967963f85407327dbp2@BIN1
1.1e-21FFCP PHASE2:Hg19::chr2:127864839..127864888,-#_ac7d17c741d0421967963f85407327dbp2@BIN1
2.41e-21FFCP PHASE2:Hg19::chr17:73851380..73851427,-#_871daaa89a5ae1c0ae6c164cf6ef49ebp1@WBP2
2.41e-21FFCP PHASE1:Hg19::chr17:73851380..73851427,-#_871daaa89a5ae1c0ae6c164cf6ef49ebp1@WBP2
3.59e-21FFCP PHASE1:Hg19::chr22:31003154..31003188,+#_937a8c55b1896d9a6ecadc7a17a6bfccp1@TCN2
3.59e-21FFCP PHASE2:Hg19::chr22:31003154..31003188,+#_937a8c55b1896d9a6ecadc7a17a6bfccp1@TCN2
3.69e-21FFCP PHASE1:Hg19::chr9:14314566..14314618,-#_71f74c7a7b1d95c801616dac960849d3p1@NFIB
3.69e-21FFCP PHASE2:Hg19::chr9:14314566..14314618,-#_71f74c7a7b1d95c801616dac960849d3p1@NFIB
4.02e-21FFCP PHASE1:Hg19::chr9:14314131..14314147,-#_1b49a5fbd65f2e152f09ddbd1e86e062p2@NFIB
4.02e-21FFCP PHASE2:Hg19::chr9:14314131..14314147,-#_1b49a5fbd65f2e152f09ddbd1e86e062p2@NFIB
4.54e-21FFCP PHASE1:Hg19::chr19:44100155..44100211,-#_0da997db29a0a803faf8b17891d88664p1@IRGQ
4.54e-21FFCP PHASE2:Hg19::chr19:44100155..44100211,-#_0da997db29a0a803faf8b17891d88664p1@IRGQ
5.7e-21FFCP PHASE2:Hg19::chr4:24914581..24914691,-#_d67bd090984e49bf1ff3e5f9c4749038p1@CCDC149
5.7e-21FFCP PHASE1:Hg19::chr4:24914581..24914691,-#_d67bd090984e49bf1ff3e5f9c4749038p1@CCDC149
6.27e-21FFCP PHASE1:Hg19::chr2:127864608..127864688,-#_129a188aed38e04b9479b4d9f0cf19bdp1@BIN1
6.27e-21FFCP PHASE2:Hg19::chr2:127864608..127864688,-#_129a188aed38e04b9479b4d9f0cf19bdp1@BIN1
1.02e-20FFCP PHASE1:Hg19::chr19:14228541..14228582,-#_d97d2534c6952440d1db296cba501849p1@PRKACA
1.02e-20FFCP PHASE2:Hg19::chr19:14228541..14228582,-#_d97d2534c6952440d1db296cba501849p1@PRKACA
1.29e-20FFCP PHASE2:Hg19::chr16:89787269..89787359,-#_b39bb5eda424220af35b35bc8880b651p1@C16orf7
1.29e-20FFCP PHASE1:Hg19::chr16:89787269..89787359,-#_b39bb5eda424220af35b35bc8880b651p1@C16orf7
1.45e-20FFCP PHASE1:Hg19::chr1:10270620..10270637,+#_eafc3be3c9786a8f15a0777780afa5fap1@KIF1B
1.45e-20FFCP PHASE2:Hg19::chr1:10270620..10270637,+#_eafc3be3c9786a8f15a0777780afa5fap1@KIF1B
2.63e-20FFCP PHASE2:Hg19::chr18:59561635..59561651,-#_78d003252d898674989d9493c1e25662p@chr18:59561635..59561651, -
2.63e-20FFCP PHASE1:Hg19::chr18:59561635..59561651,-#_78d003252d898674989d9493c1e25662p@chr18:59561635..59561651, -
3.08e-20FFCP PHASE1:Hg19::chr12:52345448..52345532,+#_e0f42cfa6eac425a237ee4c53321da20p1@ACVR1B
3.08e-20FFCP PHASE2:Hg19::chr12:52345448..52345532,+#_e0f42cfa6eac425a237ee4c53321da20p1@ACVR1B
3.96e-20FFCP PHASE1:Hg19::chr20:23614485..23614564,-#_7a1e3bf234eb26215e3152081c13ee4cp@chr20:23614485..23614564, -
3.96e-20FFCP PHASE2:Hg19::chr20:23614485..23614564,-#_7a1e3bf234eb26215e3152081c13ee4cp@chr20:23614485..23614564, -
5.35e-20FFCP PHASE1:Hg19::chr1:68698197..68698214,-#_b7bac6b53ac7596a91ed4816d2d9d5edp1@WLS
5.35e-20FFCP PHASE2:Hg19::chr1:68698197..68698214,-#_b7bac6b53ac7596a91ed4816d2d9d5edp1@WLS
6.51e-20FFCP PHASE1:Hg19::chr10:30025922..30025958,-#_b51cb8a0453fe5936e1656c5db3580c9p3@SVIL
6.51e-20FFCP PHASE2:Hg19::chr10:30025922..30025958,-#_b51cb8a0453fe5936e1656c5db3580c9p3@SVIL
6.99e-20FFCP PHASE1:Hg19::chr15:64995399..64995422,-#_50c4be9cfd7e7c8057f588ccbfda1927p1@OAZ2
6.99e-20FFCP PHASE2:Hg19::chr15:64995399..64995422,-#_50c4be9cfd7e7c8057f588ccbfda1927p1@OAZ2
8.06e-20FFCP PHASE1:Hg19::chr9:34989685..34989748,+#_09cfa4f18a19e6fe6424f200c3b318e5p1@DNAJB5
8.06e-20FFCP PHASE2:Hg19::chr9:34989685..34989748,+#_09cfa4f18a19e6fe6424f200c3b318e5p1@DNAJB5
9.9e-20FFCP PHASE1:Hg19::chrX:100333858..100333876,+#_548aaf3616a9ea836f2761528c06daedp1@TMEM35
9.9e-20FFCP PHASE2:Hg19::chrX:100333858..100333876,+#_548aaf3616a9ea836f2761528c06daedp1@TMEM35
1.09e-19FFCP PHASE1:Hg19::chr16:2563941..2563983,+#_8e0e82c46915bcf6f3357e5cfbb86ac3p1@ATP6V0C
1.09e-19FFCP PHASE2:Hg19::chr16:2563941..2563983,+#_8e0e82c46915bcf6f3357e5cfbb86ac3p1@ATP6V0C
1.11e-19FFCP PHASE1:Hg19::chr17:68165657..68165688,+#_439b8e4645b7e225a52bf5fc14489ce1p1@KCNJ2
1.11e-19FFCP PHASE2:Hg19::chr17:68165657..68165688,+#_439b8e4645b7e225a52bf5fc14489ce1p1@KCNJ2
1.12e-19FFCP PHASE2:Hg19::chr17:7492684..7492778,-#_c27ff14ce93dc3c445ababf7b3acd668p2@SOX15
1.12e-19FFCP PHASE1:Hg19::chr17:7492684..7492778,-#_c27ff14ce93dc3c445ababf7b3acd668p2@SOX15
1.16e-19FFCP PHASE1:Hg19::chr19:11466086..11466159,+#_76da0245f7fd30222ecb69f5c458c43bp1@LPPR2
1.16e-19FFCP PHASE2:Hg19::chr19:11466086..11466159,+#_76da0245f7fd30222ecb69f5c458c43bp1@LPPR2
1.32e-19FFCP PHASE2:Hg19::chr18:59561658..59561685,-#_39dfeb63cd68809c69df3b1f00c5b505p@chr18:59561658..59561685, -
1.32e-19FFCP PHASE1:Hg19::chr18:59561658..59561685,-#_39dfeb63cd68809c69df3b1f00c5b505p@chr18:59561658..59561685, -
1.38e-19FFCP PHASE1:Hg19::chr12:110719036..110719113,+#_3e8fc87f222c225d3ded29a4e41e273dp1@ATP2A2
1.38e-19FFCP PHASE2:Hg19::chr12:110719036..110719113,+#_3e8fc87f222c225d3ded29a4e41e273dp1@ATP2A2
1.45e-19FFCP PHASE1:Hg19::chr6:123110389..123110441,+#_85c308015d235172ca633d5abcf2835ap1@SMPDL3A
1.45e-19FFCP PHASE2:Hg19::chr6:123110389..123110441,+#_85c308015d235172ca633d5abcf2835ap1@SMPDL3A
1.86e-19FFCP PHASE1:Hg19::chr10:118764649..118764683,-#_9dc1a3c16cf3d7434f3c77720b221efbp2@KIAA1598
1.86e-19FFCP PHASE2:Hg19::chr10:118764649..118764683,-#_9dc1a3c16cf3d7434f3c77720b221efbp2@KIAA1598
3.3e-19FFCP PHASE2:Hg19::chr2:153191678..153191697,+#_3ee9cd9d2630cbdc39780e6b20a31888p1@FMNL2
3.3e-19FFCP PHASE1:Hg19::chr2:153191678..153191697,+#_3ee9cd9d2630cbdc39780e6b20a31888p1@FMNL2

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0006598&oldid=1837991"