Personal tools

CL:0000790

From FANTOM5_SSTAR

Revision as of 10:21, 12 September 2014 by Autoedit (talk | contribs)
Jump to: navigation, search
Name:immature alpha-beta T cell
Namespace:cell;;efo
Definition:"An alpha-beta T cell that has an immature phenotype and has not completed T cell selection." [GOC:add, GOC:tfm, ISBN:0781735149]
Synonyms: "immature alpha-beta T lymphocyte" EXACT []
"immature alpha-beta T-cell" EXACT []
"immature alpha-beta T-lymphocyte" EXACT []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0000789(alpha-beta T cell),CL:0002420(immature T cell)



Children


is a:CL:0000809 (double-positive, alpha-beta thymocyte),CL:0000810 (CD4-positive, alpha-beta thymocyte),CL:0000914 (immature NK T cell)
develops from:CL:0000791 (mature alpha-beta T cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.




Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000790 (immature alpha-beta T cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data